RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 TRAV19A0A0A6YYK7 116 aa14.88□□□□□ -0.03
PTCH1-226ENST00000553011 SOBPA7XYQ1 873 aa14.88□□□□□ -0.03
PTCH1-226ENST00000553011 GOLGA6L19H0YKK7 550 aa14.88□□□□□ -0.03
PTCH1-226ENST00000553011 CKMP06732 381 aa14.88□□□□□ -0.03
PTCH1-226ENST00000553011 CFHP08603 1231 aa14.88□□□□□ -0.03
PTCH1-226ENST00000553011 ZDHHC11BP0C7U3 371 aa14.88□□□□□ -0.03
PTCH1-226ENST00000553011 SETSIPP0DME0 302 aa14.88□□□□□ -0.03
PTCH1-226ENST00000553011 SRFP11831 508 aa14.88□□□□□ -0.03
PTCH1-226ENST00000553011 RFX1P22670 979 aa14.88□□□□□ -0.03
PTCH1-226ENST00000553011 CLCN1P35523 988 aa14.88□□□□□ -0.03
PTCH1-226ENST00000553011 PPP3CCP48454 512 aa14.88□□□□□ -0.03
PTCH1-226ENST00000553011 RGS7P49802 495 aa14.88□□□□□ -0.03
PTCH1-226ENST00000553011 SLC8A3P57103 927 aa14.88□□□□□ -0.03
PTCH1-226ENST00000553011 POLR2FP61218 127 aaKnown RBP14.88□□□□□ -0.03
PTCH1-226ENST00000553011 RAB41Q5JT25 222 aa14.88□□□□□ -0.03
PTCH1-226ENST00000553011 DENND1BQ6P3S1 775 aa14.88□□□□□ -0.03
PTCH1-226ENST00000553011 FAM71AQ8IYT1 594 aa14.88□□□□□ -0.03
PTCH1-226ENST00000553011 OVCA2Q8WZ82 227 aa14.88□□□□□ -0.03
PTCH1-226ENST00000553011 USP13Q92995 863 aaPredicted RBP14.88□□□□□ -0.03
PTCH1-226ENST00000553011 STK33Q9BYT3 514 aa14.88□□□□□ -0.03
PTCH1-226ENST00000553011 NLRC4Q9NPP4 1024 aa14.88□□□□□ -0.03
PTCH1-226ENST00000553011 RTN4Q9NQC3 1192 aaKnown RBP14.88□□□□□ -0.03
PTCH1-226ENST00000553011 SCML2Q9UQR0 700 aa14.88□□□□□ -0.03
PTCH1-226ENST00000553011 USP3Q9Y6I4 520 aa14.88□□□□□ -0.03
PTCH1-226ENST00000553011 COL4A2P08572 1712 aa14.88□□□□□ -0.03
PTCH1-226ENST00000553011 A0A1B0GTH6 734 aa14.87□□□□□ -0.03
PTCH1-226ENST00000553011 FAM86C2PA6NEL3 165 aa14.87□□□□□ -0.03
PTCH1-226ENST00000553011 F8VZ95 297 aa14.87□□□□□ -0.03
PTCH1-226ENST00000553011 DPYSL4O14531 572 aa14.87□□□□□ -0.03
PTCH1-226ENST00000553011 GABBR2O75899 941 aa14.87□□□□□ -0.03
PTCH1-226ENST00000553011 OAS1P00973 400 aaKnown RBP14.87□□□□□ -0.03
PTCH1-226ENST00000553011 SERPINC1P01008 464 aa14.87□□□□□ -0.03
PTCH1-226ENST00000553011 USP17L7P0C7H9 530 aa14.87□□□□□ -0.03
PTCH1-226ENST00000553011 PSMC3P17980 439 aa14.87□□□□□ -0.03
PTCH1-226ENST00000553011 HDCP19113 662 aa14.87□□□□□ -0.03
PTCH1-226ENST00000553011 PLA2G4AP47712 749 aa14.87□□□□□ -0.03
PTCH1-226ENST00000553011 TKTL1P51854 596 aa14.87□□□□□ -0.03
PTCH1-226ENST00000553011 TPM4P67936 248 aa14.87□□□□□ -0.03
PTCH1-226ENST00000553011 FANCCQ00597 558 aa14.87□□□□□ -0.03
PTCH1-226ENST00000553011 SIGLEC14Q08ET2 396 aa14.87□□□□□ -0.03
PTCH1-226ENST00000553011 FILIP1LQ4L180 1135 aa14.87□□□□□ -0.03
PTCH1-226ENST00000553011 PMF1Q6P1K2 205 aa14.87□□□□□ -0.03
PTCH1-226ENST00000553011 TRIM67Q6ZTA4 783 aa14.87□□□□□ -0.03
PTCH1-226ENST00000553011 SLC47A2Q86VL8 602 aa14.87□□□□□ -0.03
PTCH1-226ENST00000553011 MFSD6LQ8IWD5 586 aa14.87□□□□□ -0.03
PTCH1-226ENST00000553011 NEK11Q8NG66 645 aa14.87□□□□□ -0.03
PTCH1-226ENST00000553011 RIN3Q8TB24 985 aa14.87□□□□□ -0.03
PTCH1-226ENST00000553011 SLC35F5Q8WV83 523 aa14.87□□□□□ -0.03
PTCH1-226ENST00000553011 E2F7Q96AV8 911 aa14.87□□□□□ -0.03
PTCH1-226ENST00000553011 RNF38Q9H0F5 515 aa14.87□□□□□ -0.03
PTCH1-226ENST00000553011 CCSER2Q9H7U1 834 aa14.87□□□□□ -0.03
PTCH1-226ENST00000553011 NMUR1Q9HB89 426 aa14.87□□□□□ -0.03
PTCH1-226ENST00000553011 LRRC4Q9HBW1 653 aa14.87□□□□□ -0.03
PTCH1-226ENST00000553011 C11orf16Q9NQ32 467 aa14.87□□□□□ -0.03
PTCH1-226ENST00000553011 TDP1Q9NUW8 608 aa14.87□□□□□ -0.03
PTCH1-226ENST00000553011 OSER1Q9NX31 292 aa14.87□□□□□ -0.03
PTCH1-226ENST00000553011 COL4A3Q01955 1670 aa14.87□□□□□ -0.03
PTCH1-226ENST00000553011 A0A1W2PQH9 124 aa14.86□□□□□ -0.03
PTCH1-226ENST00000553011 PIK3R2O00459 728 aa14.86□□□□□ -0.03
PTCH1-226ENST00000553011 MED7O43513 233 aa14.86□□□□□ -0.03
PTCH1-226ENST00000553011 OLFM2O95897 454 aa14.86□□□□□ -0.03
PTCH1-226ENST00000553011 GDI1P31150 447 aa14.86□□□□□ -0.03
PTCH1-226ENST00000553011 GPD2P43304 727 aa14.86□□□□□ -0.03
PTCH1-226ENST00000553011 PTK2Q05397 1052 aa14.86□□□□□ -0.03
PTCH1-226ENST00000553011 ADIGQ0VDE8 80 aa14.86□□□□□ -0.03
PTCH1-226ENST00000553011 HECTD3Q5T447 861 aa14.86□□□□□ -0.03
PTCH1-226ENST00000553011 IER5LQ5T953 404 aa14.86□□□□□ -0.03
PTCH1-226ENST00000553011 SNX30Q5VWJ9 437 aa14.86□□□□□ -0.03
PTCH1-226ENST00000553011 SMYD5Q6GMV2 418 aa14.86□□□□□ -0.03
PTCH1-226ENST00000553011 CCDC186Q7Z3E2 898 aa14.86□□□□□ -0.03
PTCH1-226ENST00000553011 SCD5Q86SK9 330 aa14.86□□□□□ -0.03
PTCH1-226ENST00000553011 CELF5Q8N6W0 485 aaKnown RBP14.86□□□□□ -0.03
PTCH1-226ENST00000553011 TTC16Q8NEE8 873 aa14.86□□□□□ -0.03
PTCH1-226ENST00000553011 DEPDC1BQ8WUY9 529 aa14.86□□□□□ -0.03
PTCH1-226ENST00000553011 KCTD13Q8WZ19 329 aa14.86□□□□□ -0.03
PTCH1-226ENST00000553011 NDRG1Q92597 394 aaKnown RBP14.86□□□□□ -0.03
PTCH1-226ENST00000553011 TRMT61BQ9BVS5 477 aaKnown RBP14.86□□□□□ -0.03
PTCH1-226ENST00000553011 ULBP1Q9BZM6 244 aa14.86□□□□□ -0.03
PTCH1-226ENST00000553011 SLC2A4RGQ9NR83 387 aa14.86□□□□□ -0.03
PTCH1-226ENST00000553011 TLR8Q9NR97 1041 aaKnown RBP14.86□□□□□ -0.03
PTCH1-226ENST00000553011 OBP2AQ9NY56 170 aa14.86□□□□□ -0.03
PTCH1-226ENST00000553011 ZNF318Q5VUA4 2279 aa14.85□□□□□ -0.03
PTCH1-226ENST00000553011 TMEM221A6NGB7 291 aa14.85□□□□□ -0.03
PTCH1-226ENST00000553011 M0R296 226 aa14.85□□□□□ -0.03
PTCH1-226ENST00000553011 COCHO43405 550 aa14.85□□□□□ -0.03
PTCH1-226ENST00000553011 LCP1P13796 627 aa14.85□□□□□ -0.03
PTCH1-226ENST00000553011 PFKLP17858 780 aa14.85□□□□□ -0.03
PTCH1-226ENST00000553011 PDE6CP51160 858 aa14.85□□□□□ -0.03
PTCH1-226ENST00000553011 JAM2P57087 298 aa14.85□□□□□ -0.03
PTCH1-226ENST00000553011 ZNF445P59923 1031 aa14.85□□□□□ -0.03
PTCH1-226ENST00000553011 ZXDBP98169 803 aa14.85□□□□□ -0.03
PTCH1-226ENST00000553011 FCHO2Q0JRZ9 810 aa14.85□□□□□ -0.03
PTCH1-226ENST00000553011 ZNF268Q14587 947 aaPredicted RBP14.85□□□□□ -0.03
PTCH1-226ENST00000553011 NR1I3Q14994 352 aa14.85□□□□□ -0.03
PTCH1-226ENST00000553011 BHLHA9Q7RTU4 235 aa14.85□□□□□ -0.03
PTCH1-226ENST00000553011 PASD1Q8IV76 773 aa14.85□□□□□ -0.03
PTCH1-226ENST00000553011 YAF2Q8IY57 180 aa14.85□□□□□ -0.03
PTCH1-226ENST00000553011 RNF214Q8ND24 703 aa14.85□□□□□ -0.03
PTCH1-226ENST00000553011 BPIFB1Q8TDL5 484 aa14.85□□□□□ -0.03
PTCH1-226ENST00000553011 ASIC4Q96FT7 647 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms