RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 GPR156Q8NFN8 814 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 OR5AN1Q8NGI8 311 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 CCHCR1Q8TD31 782 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 IGDCC4Q8TDY8 1250 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 CPA5Q8WXQ8 436 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 HERVK_113Q902F9 699 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 RAB24Q969Q5 203 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 MUL1Q969V5 352 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 ZNF566Q969W8 418 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 MPP4Q96JB8 637 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 NT5C1BQ96P26 610 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 C11orf84Q9BUA3 381 aaPredicted RBP4.33□□□□□ -1.72
LIMA1-208ENST00000551691 BTBD2Q9BX70 525 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 ZNF341Q9BYN7 854 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 C22orf23Q9BZE7 217 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 SCAND2PQ9GZW5 306 aaPredicted RBP4.33□□□□□ -1.72
LIMA1-208ENST00000551691 SERHLQ9NQF3 203 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 PNPOQ9NVS9 261 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 POLR3BQ9NW08 1133 aaPredicted RBP4.33□□□□□ -1.72
LIMA1-208ENST00000551691 PIH1D1Q9NWS0 290 aaKnown RBP4.33□□□□□ -1.72
LIMA1-208ENST00000551691 RRN3Q9NYV6 651 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 ARHGAP20Q9P2F6 1191 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 SAE1Q9UBE0 346 aaPredicted RBP4.33□□□□□ -1.72
LIMA1-208ENST00000551691 ZNF112Q9UJU3 913 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 FBXO2Q9UK22 296 aaPredicted RBP4.33□□□□□ -1.72
LIMA1-208ENST00000551691 TMPRSS11EQ9UL52 423 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 AFG3L2Q9Y4W6 797 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 FRYLO94915 3013 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 NCOR2Q9Y618 2525 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 ZNF318Q5VUA4 2279 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 LRRC37A2A6NM11 1700 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 UNC79Q9P2D8 2635 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 LRRC14BA6NHZ5 514 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 ZNF839A8K0R7 811 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 ISM1B1AKI9 464 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 IRAK2O43187 625 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 DAPK3O43293 454 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 FSBPO95073 299 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 CSTBP04080 98 aaKnown RBP4.32□□□□□ -1.72
LIMA1-208ENST00000551691 IL9P15248 144 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 THBS2P35442 1172 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 GLRBP48167 497 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 HK3P52790 923 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 MEF2AQ02078 507 aaPredicted RBP4.32□□□□□ -1.72
LIMA1-208ENST00000551691 FPGSQ05932 587 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 ZNF543Q08ER8 600 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 TCP10Q12799 353 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 PPFIA1Q13136 1202 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 PMS2P11Q13670 270 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 DAG1Q14118 895 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 RAB39AQ14964 217 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 ARL13BQ3SXY8 428 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 TEPPQ6URK8 271 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 LRSAM1Q6UWE0 723 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 ZNF365Q70YC5 407 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 FASTKD5Q7L8L6 764 aaKnown RBP4.32□□□□□ -1.72
LIMA1-208ENST00000551691 SPRED1Q7Z699 444 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 PLBD2Q8NHP8 589 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.32□□□□□ -1.72
LIMA1-208ENST00000551691 SKA1Q96BD8 255 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 TMEM41AQ96HV5 264 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 ZC3H10Q96K80 434 aaKnown RBP4.32□□□□□ -1.72
LIMA1-208ENST00000551691 ZSCAN31Q96LW9 406 aaPredicted RBP4.32□□□□□ -1.72
LIMA1-208ENST00000551691 TBATAQ96M53 351 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 ZSWIM3Q96MP5 696 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 VRK1Q99986 396 aaPredicted RBP4.32□□□□□ -1.72
LIMA1-208ENST00000551691 PITHD1Q9GZP4 211 aaPredicted RBP4.32□□□□□ -1.72
LIMA1-208ENST00000551691 KCNH6Q9H252 994 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 WDCPQ9H6R7 721 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 SLC28A3Q9HAS3 691 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 TXNRD2Q9NNW7 524 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 ALG13Q9NP73 1137 aaKnown RBP4.32□□□□□ -1.72
LIMA1-208ENST00000551691 SACM1LQ9NTJ5 587 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 TMEM140Q9NV12 185 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 LAS1LQ9Y4W2 734 aaKnown RBP4.32□□□□□ -1.72
LIMA1-208ENST00000551691 PCDHGB3Q9Y5G1 929 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 SCINQ9Y6U3 715 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 ZNF292O60281 2723 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 COL4A6Q14031 1691 aa4.32□□□□□ -1.72
LIMA1-208ENST00000551691 ASPMQ8IZT6 3477 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 A0A0A6YYJ9 748 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 H0Y858 1186 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 DNM1LO00429 736 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 KIAA0355O15063 1070 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 THAP12O43422 761 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 AGR2O95994 175 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 PLATP00750 562 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 GNAI3P08754 354 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 ALADP13716 330 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 IL1R1P14778 569 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 CSF2RAP15509 400 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 BDNFP23560 247 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 KCNJ4P48050 445 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 GNAI1P63096 354 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 CREMQ03060 361 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 DDX10Q13206 875 aaKnown RBP4.31□□□□□ -1.72
LIMA1-208ENST00000551691 TBX2Q13207 712 aaPredicted RBP4.31□□□□□ -1.72
LIMA1-208ENST00000551691 PLS1Q14651 629 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 KHDC1Q4VXA5 237 aaKnown RBP4.31□□□□□ -1.72
LIMA1-208ENST00000551691 PRAMEF19Q5SWL8 479 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms