RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 GMIPQ9P107 970 aa17.31■□□□□ 0.36
VPS29-207ENST00000549970 CFAP97Q9P2B7 532 aa17.31■□□□□ 0.36
VPS29-207ENST00000549970 COCHO43405 550 aa17.3■□□□□ 0.36
VPS29-207ENST00000549970 HRO43593 1189 aa17.3■□□□□ 0.36
VPS29-207ENST00000549970 ATG13O75143 517 aa17.3■□□□□ 0.36
VPS29-207ENST00000549970 EPB41P11171 864 aaKnown RBP17.3■□□□□ 0.36
VPS29-207ENST00000549970 CD58P19256 250 aa17.3■□□□□ 0.36
VPS29-207ENST00000549970 TRIM21P19474 475 aaKnown RBP17.3■□□□□ 0.36
VPS29-207ENST00000549970 PRCPP42785 496 aa17.3■□□□□ 0.36
VPS29-207ENST00000549970 PXNP49023 591 aaPredicted RBP17.3■□□□□ 0.36
VPS29-207ENST00000549970 ENPEPQ07075 957 aa17.3■□□□□ 0.36
VPS29-207ENST00000549970 FBXO43Q4G163 708 aa17.3■□□□□ 0.36
VPS29-207ENST00000549970 RPLP0P6Q8NHW5 317 aa17.3■□□□□ 0.36
VPS29-207ENST00000549970 EZH1Q92800 747 aaPredicted RBP17.3■□□□□ 0.36
VPS29-207ENST00000549970 JAKMIP2Q96AA8 810 aa17.3■□□□□ 0.36
VPS29-207ENST00000549970 RMDN1Q96DB5 314 aa17.3■□□□□ 0.36
VPS29-207ENST00000549970 NIF3L1Q9GZT8 377 aa17.3■□□□□ 0.36
VPS29-207ENST00000549970 CYP3A43Q9HB55 503 aa17.3■□□□□ 0.36
VPS29-207ENST00000549970 POLR3BQ9NW08 1133 aaPredicted RBP17.3■□□□□ 0.36
VPS29-207ENST00000549970 IL37Q9NZH6 218 aa17.3■□□□□ 0.36
VPS29-207ENST00000549970 SLC8A2Q9UPR5 921 aa17.3■□□□□ 0.36
VPS29-207ENST00000549970 CETN3O15182 167 aa17.29■□□□□ 0.36
VPS29-207ENST00000549970 FAM200BP0CF97 657 aa17.29■□□□□ 0.36
VPS29-207ENST00000549970 MXI1P50539 228 aa17.29■□□□□ 0.36
VPS29-207ENST00000549970 INCA1Q0VD86 236 aa17.29■□□□□ 0.36
VPS29-207ENST00000549970 HECTD3Q5T447 861 aa17.29■□□□□ 0.36
VPS29-207ENST00000549970 ZNF658Q5TYW1 1059 aaPredicted RBP17.29■□□□□ 0.36
VPS29-207ENST00000549970 KRT39Q6A163 491 aa17.29■□□□□ 0.36
VPS29-207ENST00000549970 LAIR1Q6GTX8 287 aa17.29■□□□□ 0.36
VPS29-207ENST00000549970 WDR5BQ86VZ2 330 aa17.29■□□□□ 0.36
VPS29-207ENST00000549970 DDX42Q86XP3 938 aaKnown RBP eCLIP17.29■□□□□ 0.36
VPS29-207ENST00000549970 ENGASEQ8NFI3 743 aa17.29■□□□□ 0.36
VPS29-207ENST00000549970 NT5C1AQ9BXI3 368 aa17.29■□□□□ 0.36
VPS29-207ENST00000549970 CCSER2Q9H7U1 834 aa17.29■□□□□ 0.36
VPS29-207ENST00000549970 CSNK1G1Q9HCP0 422 aa17.29■□□□□ 0.36
VPS29-207ENST00000549970 COMMD8Q9NX08 183 aa17.29■□□□□ 0.36
VPS29-207ENST00000549970 USP18Q9UMW8 372 aa17.29■□□□□ 0.36
VPS29-207ENST00000549970 FAM92AA1XBS5 289 aa17.28■□□□□ 0.36
VPS29-207ENST00000549970 SLC9A3R1O14745 358 aaPredicted RBP17.28■□□□□ 0.36
VPS29-207ENST00000549970 SMC2O95347 1197 aa17.28■□□□□ 0.36
VPS29-207ENST00000549970 CYP17A1P05093 508 aa17.28■□□□□ 0.36
VPS29-207ENST00000549970 HOXA6P31267 233 aa17.28■□□□□ 0.36
VPS29-207ENST00000549970 GTF2H1P32780 548 aa17.28■□□□□ 0.36
VPS29-207ENST00000549970 CNR2P34972 360 aa17.28■□□□□ 0.36
VPS29-207ENST00000549970 OPRD1P41143 372 aa17.28■□□□□ 0.36
VPS29-207ENST00000549970 SNX30Q5VWJ9 437 aa17.28■□□□□ 0.36
VPS29-207ENST00000549970 CLEC20AQ6ZU45 233 aa17.28■□□□□ 0.36
VPS29-207ENST00000549970 CEP68Q76N32 757 aa17.28■□□□□ 0.36
VPS29-207ENST00000549970 SEMA4DQ92854 862 aa17.28■□□□□ 0.36
VPS29-207ENST00000549970 SMARCE1Q969G3 411 aa17.28■□□□□ 0.36
VPS29-207ENST00000549970 CYFIP2Q96F07 1278 aa17.28■□□□□ 0.36
VPS29-207ENST00000549970 GSDMAQ96QA5 445 aa17.28■□□□□ 0.36
VPS29-207ENST00000549970 HHIPQ96QV1 700 aa17.28■□□□□ 0.36
VPS29-207ENST00000549970 TSG101Q99816 390 aa17.28■□□□□ 0.36
VPS29-207ENST00000549970 NACA2Q9H009 215 aa17.28■□□□□ 0.36
VPS29-207ENST00000549970 FBXO44Q9H4M3 255 aa17.28■□□□□ 0.36
VPS29-207ENST00000549970 PCDHA5Q9Y5H7 936 aa17.28■□□□□ 0.36
VPS29-207ENST00000549970 MYO16Q9Y6X6 1858 aa17.28■□□□□ 0.36
VPS29-207ENST00000549970 MYOFQ9NZM1 2061 aa17.28■□□□□ 0.36
VPS29-207ENST00000549970 CILPO75339 1184 aa17.27■□□□□ 0.36
VPS29-207ENST00000549970 ZDHHC11BP0C7U3 371 aa17.27■□□□□ 0.36
VPS29-207ENST00000549970 PGFP49763 221 aa17.27■□□□□ 0.36
VPS29-207ENST00000549970 TUBP50607 506 aa17.27■□□□□ 0.36
VPS29-207ENST00000549970 DHCR24Q15392 516 aa17.27■□□□□ 0.36
VPS29-207ENST00000549970 GAB4Q2WGN9 574 aa17.27■□□□□ 0.36
VPS29-207ENST00000549970 ZNF394Q53GI3 561 aa17.27■□□□□ 0.36
VPS29-207ENST00000549970 DCAF17Q5H9S7 520 aaPredicted RBP17.27■□□□□ 0.36
VPS29-207ENST00000549970 TCERG1LQ5VWI1 586 aa17.27■□□□□ 0.36
VPS29-207ENST00000549970 GPRIN1Q7Z2K8 1008 aa17.27■□□□□ 0.36
VPS29-207ENST00000549970 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.27■□□□□ 0.36
VPS29-207ENST00000549970 ADGRG2Q8IZP9 1017 aa17.27■□□□□ 0.36
VPS29-207ENST00000549970 GPR161Q8N6U8 529 aaKnown RBP17.27■□□□□ 0.36
VPS29-207ENST00000549970 KIAA1958Q8N8K9 716 aa17.27■□□□□ 0.36
VPS29-207ENST00000549970 WHAMMQ8TF30 809 aa17.27■□□□□ 0.36
VPS29-207ENST00000549970 ZFRQ96KR1 1074 aaKnown RBP17.27■□□□□ 0.36
VPS29-207ENST00000549970 HNRNPABQ99729 332 aaKnown RBP17.27■□□□□ 0.36
VPS29-207ENST00000549970 SH3BP1Q9Y3L3 701 aa17.27■□□□□ 0.36
VPS29-207ENST00000549970 CEP250Q9BV73 2442 aa17.27■□□□□ 0.35
VPS29-207ENST00000549970 TRIM49BA6NDI0 452 aa17.26■□□□□ 0.35
VPS29-207ENST00000549970 TLR5O60602 858 aa17.26■□□□□ 0.35
VPS29-207ENST00000549970 IRF1P10914 325 aa17.26■□□□□ 0.35
VPS29-207ENST00000549970 PMS1P54277 932 aaKnown RBP17.26■□□□□ 0.35
VPS29-207ENST00000549970 SEC13P55735 322 aa17.26■□□□□ 0.35
VPS29-207ENST00000549970 SPEM2Q0P670 501 aa17.26■□□□□ 0.35
VPS29-207ENST00000549970 FBXL13Q8NEE6 735 aa17.26■□□□□ 0.35
VPS29-207ENST00000549970 PARD6AQ9NPB6 346 aa17.26■□□□□ 0.35
VPS29-207ENST00000549970 TLR8Q9NR97 1041 aaKnown RBP17.26■□□□□ 0.35
VPS29-207ENST00000549970 RAB20Q9NX57 234 aa17.26■□□□□ 0.35
VPS29-207ENST00000549970 TBC1D14Q9P2M4 693 aa17.26■□□□□ 0.35
VPS29-207ENST00000549970 HOOK1Q9UJC3 728 aaKnown RBP17.26■□□□□ 0.35
VPS29-207ENST00000549970 KIAA1549LQ6ZVL6 1849 aa17.26■□□□□ 0.35
VPS29-207ENST00000549970 SDK1Q7Z5N4 2213 aa17.25■□□□□ 0.35
VPS29-207ENST00000549970 E2F8A0AVK6 867 aa17.25■□□□□ 0.35
VPS29-207ENST00000549970 HHLA1C9JL84 531 aa17.25■□□□□ 0.35
VPS29-207ENST00000549970 CYP26A1O43174 497 aa17.25■□□□□ 0.35
VPS29-207ENST00000549970 STX10O60499 249 aa17.25■□□□□ 0.35
VPS29-207ENST00000549970 ADH1CP00326 375 aa17.25■□□□□ 0.35
VPS29-207ENST00000549970 RETP07949 1114 aa17.25■□□□□ 0.35
VPS29-207ENST00000549970 ACO1P21399 889 aaKnown RBP17.25■□□□□ 0.35
VPS29-207ENST00000549970 TGM1P22735 817 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms