RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 TRAPPC3O43617 180 aa16.9■□□□□ 0.3
CUX1-213ENST00000549414 RECQL4O94761 1208 aa16.9■□□□□ 0.3
CUX1-213ENST00000549414 CD302Q8IX05 232 aa16.9■□□□□ 0.3
CUX1-213ENST00000549414 SLIT2O94813 1529 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 KCNK1O00180 336 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 UBOX5O94941 541 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 CCDC130P13994 396 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 AMPD1P23109 780 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 HNRNPH1P31943 449 aaKnown RBP16.89■□□□□ 0.29
CUX1-213ENST00000549414 ATXN3P54252 364 aaPredicted RBP16.89■□□□□ 0.29
CUX1-213ENST00000549414 PKN2Q16513 984 aaKnown RBP16.89■□□□□ 0.29
CUX1-213ENST00000549414 RNF180Q86T96 592 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 BHMTQ93088 406 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 SPDL1Q96EA4 605 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 ACO2Q99798 780 aaKnown RBP16.89■□□□□ 0.29
CUX1-213ENST00000549414 ABHD16BQ9H3Z7 469 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 TMEM134Q9H6X4 195 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 SUDS3Q9H7L9 328 aaPredicted RBP16.89■□□□□ 0.29
CUX1-213ENST00000549414 ADA2Q9NZK5 511 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 FAM8A1Q9UBU6 413 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 ITGA11Q9UKX5 1188 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 PHLPP1O60346 1717 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 BTNL10A8MVZ5 291 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 DPYSL4O14531 572 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 CCDC22O60826 627 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 KCNA2P16389 499 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 EIF4BP23588 611 aaKnown RBP16.89■□□□□ 0.29
CUX1-213ENST00000549414 TKTL1P51854 596 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 SLC27A1Q6PCB7 646 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 Q9H521 79 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 NFASCO94856 1347 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 GOLGA8QA0A0J9YX86 632 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 GOLGA8OA6NCC3 632 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 GOLGA8NF8WBI6 632 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 RGS2P41220 211 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 HIRAP54198 1017 aaPredicted RBP16.89■□□□□ 0.29
CUX1-213ENST00000549414 IL1RL1Q01638 556 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 ZNF268Q14587 947 aaPredicted RBP16.89■□□□□ 0.29
CUX1-213ENST00000549414 PDK2Q15119 407 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 LRRC36Q1X8D7 754 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 NPNTQ6UXI9 565 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 MFSD14AQ96MC6 490 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 ZNF512Q96ME7 567 aaPredicted RBP16.89■□□□□ 0.29
CUX1-213ENST00000549414 SERPINI1Q99574 410 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 MAGEB5Q9BZ81 275 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 XAB2Q9HCS7 855 aaKnown RBP16.89■□□□□ 0.29
CUX1-213ENST00000549414 LMCD1Q9NZU5 365 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 HAO1Q9UJM8 370 aa16.89■□□□□ 0.29
CUX1-213ENST00000549414 FARP2O94887 1054 aaPredicted RBP16.88■□□□□ 0.29
CUX1-213ENST00000549414 PYGBP11216 843 aa16.88■□□□□ 0.29
CUX1-213ENST00000549414 CHKAP35790 457 aa16.88■□□□□ 0.29
CUX1-213ENST00000549414 SCTRP47872 440 aa16.88■□□□□ 0.29
CUX1-213ENST00000549414 SERPINB9P50453 376 aa16.88■□□□□ 0.29
CUX1-213ENST00000549414 ACCSLQ4AC99 568 aa16.88■□□□□ 0.29
CUX1-213ENST00000549414 B2RBV5 119 aa16.88■□□□□ 0.29
CUX1-213ENST00000549414 BANF1O75531 89 aa16.88■□□□□ 0.29
CUX1-213ENST00000549414 CST3P01034 146 aaPredicted RBP16.88■□□□□ 0.29
CUX1-213ENST00000549414 JCHAINP01591 159 aa16.88■□□□□ 0.29
CUX1-213ENST00000549414 THP07101 528 aa16.88■□□□□ 0.29
CUX1-213ENST00000549414 ACVR2BQ13705 512 aa16.88■□□□□ 0.29
CUX1-213ENST00000549414 TLK2Q86UE8 772 aa16.88■□□□□ 0.29
CUX1-213ENST00000549414 TTC30BQ8N4P2 665 aa16.88■□□□□ 0.29
CUX1-213ENST00000549414 C12orf29Q8N999 325 aa16.88■□□□□ 0.29
CUX1-213ENST00000549414 CELF6Q96J87 481 aaKnown RBP16.88■□□□□ 0.29
CUX1-213ENST00000549414 CD248Q9HCU0 757 aa16.88■□□□□ 0.29
CUX1-213ENST00000549414 MOSPD1Q9UJG1 213 aa16.88■□□□□ 0.29
CUX1-213ENST00000549414 LRP6O75581 1613 aa16.88■□□□□ 0.29
CUX1-213ENST00000549414 RASSF10A6NK89 507 aa16.88■□□□□ 0.29
CUX1-213ENST00000549414 LCA5LO95447 670 aa16.88■□□□□ 0.29
CUX1-213ENST00000549414 TGM2P21980 687 aa16.88■□□□□ 0.29
CUX1-213ENST00000549414 SPRP35270 261 aaPredicted RBP16.88■□□□□ 0.29
CUX1-213ENST00000549414 BST2Q10589 180 aaKnown RBP16.88■□□□□ 0.29
CUX1-213ENST00000549414 DUPD1Q68J44 220 aa16.88■□□□□ 0.29
CUX1-213ENST00000549414 KATNAL2Q8IYT4 538 aa16.88■□□□□ 0.29
CUX1-213ENST00000549414 PPHLN1Q8NEY8 458 aaKnown RBP16.88■□□□□ 0.29
CUX1-213ENST00000549414 THTPAQ9BU02 230 aa16.88■□□□□ 0.29
CUX1-213ENST00000549414 DDX43Q9NXZ2 648 aaKnown RBP16.88■□□□□ 0.29
CUX1-213ENST00000549414 HEY2Q9UBP5 337 aa16.88■□□□□ 0.29
CUX1-213ENST00000549414 SMIM24O75264 130 aa16.88■□□□□ 0.29
CUX1-213ENST00000549414 RABGAP1LQ5R372 815 aa16.88■□□□□ 0.29
CUX1-213ENST00000549414 MBOAT7Q96N66 472 aa16.88■□□□□ 0.29
CUX1-213ENST00000549414 PPCSQ9HAB8 311 aa16.88■□□□□ 0.29
CUX1-213ENST00000549414 CPSF2Q9P2I0 782 aaKnown RBP16.88■□□□□ 0.29
CUX1-213ENST00000549414 SHOC2Q9UQ13 582 aa16.88■□□□□ 0.29
CUX1-213ENST00000549414 ADAMTSL3P82987 1691 aa16.87■□□□□ 0.29
CUX1-213ENST00000549414 SMAPO00193 183 aa16.87■□□□□ 0.29
CUX1-213ENST00000549414 MTHFD1LQ6UB35 978 aa16.87■□□□□ 0.29
CUX1-213ENST00000549414 NLRP9Q7RTR0 991 aa16.87■□□□□ 0.29
CUX1-213ENST00000549414 CPNE8Q86YQ8 564 aa16.87■□□□□ 0.29
CUX1-213ENST00000549414 EFHBQ8N7U6 833 aa16.87■□□□□ 0.29
CUX1-213ENST00000549414 HELQQ8TDG4 1101 aa16.87■□□□□ 0.29
CUX1-213ENST00000549414 VTA1Q9NP79 307 aa16.87■□□□□ 0.29
CUX1-213ENST00000549414 SCOCQ9UIL1 159 aa16.87■□□□□ 0.29
CUX1-213ENST00000549414 HMGCRP04035 888 aa16.87■□□□□ 0.29
CUX1-213ENST00000549414 FOXD4Q12950 439 aaPredicted RBP16.87■□□□□ 0.29
CUX1-213ENST00000549414 CES3Q6UWW8 571 aa16.87■□□□□ 0.29
CUX1-213ENST00000549414 NETO2Q8NC67 525 aa16.87■□□□□ 0.29
CUX1-213ENST00000549414 DDX27Q96GQ7 796 aaKnown RBP16.87■□□□□ 0.29
CUX1-213ENST00000549414 ELMO2Q96JJ3 720 aa16.87■□□□□ 0.29
CUX1-213ENST00000549414 A0A0B4J269 797 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms