RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 EPN2O95208 641 aa9.01□□□□□ -0.97
USP28-215ENST00000545608 STAU1O95793 577 aaKnown RBP9.01□□□□□ -0.97
USP28-215ENST00000545608 F13A1P00488 732 aa9.01□□□□□ -0.97
USP28-215ENST00000545608 ABL1P00519 1130 aa9.01□□□□□ -0.97
USP28-215ENST00000545608 ZNF806P0C7X5 589 aa9.01□□□□□ -0.97
USP28-215ENST00000545608 ZSCAN22P10073 491 aaPredicted RBP9.01□□□□□ -0.97
USP28-215ENST00000545608 PFKLP17858 780 aa9.01□□□□□ -0.97
USP28-215ENST00000545608 SOX11P35716 441 aa9.01□□□□□ -0.97
USP28-215ENST00000545608 CDH8P55286 799 aa9.01□□□□□ -0.97
USP28-215ENST00000545608 TNNC1P63316 161 aa9.01□□□□□ -0.97
USP28-215ENST00000545608 NOP14P78316 857 aaKnown RBP9.01□□□□□ -0.97
USP28-215ENST00000545608 SLC7A9P82251 487 aa9.01□□□□□ -0.97
USP28-215ENST00000545608 TAF10Q12962 218 aa9.01□□□□□ -0.97
USP28-215ENST00000545608 NR1H3Q13133 447 aa9.01□□□□□ -0.97
USP28-215ENST00000545608 TRPC3Q13507 836 aa9.01□□□□□ -0.97
USP28-215ENST00000545608 DMC1Q14565 340 aa9.01□□□□□ -0.97
USP28-215ENST00000545608 KNOP1Q1ED39 458 aaKnown RBP9.01□□□□□ -0.97
USP28-215ENST00000545608 PLK5Q496M5 336 aa9.01□□□□□ -0.97
USP28-215ENST00000545608 RESP18Q5W5W9 173 aa9.01□□□□□ -0.97
USP28-215ENST00000545608 DESI1Q6ICB0 168 aa9.01□□□□□ -0.97
USP28-215ENST00000545608 C12orf56Q8IXR9 622 aa9.01□□□□□ -0.97
USP28-215ENST00000545608 GRAMD1CQ8IYS0 662 aa9.01□□□□□ -0.97
USP28-215ENST00000545608 ADGRG2Q8IZP9 1017 aa9.01□□□□□ -0.97
USP28-215ENST00000545608 USP33Q8TEY7 942 aa9.01□□□□□ -0.97
USP28-215ENST00000545608 EXOC4Q96A65 974 aa9.01□□□□□ -0.97
USP28-215ENST00000545608 LOXL4Q96JB6 756 aa9.01□□□□□ -0.97
USP28-215ENST00000545608 CNTNAP3BQ96NU0 1288 aa9.01□□□□□ -0.97
USP28-215ENST00000545608 CNTNAP3Q9BZ76 1288 aa9.01□□□□□ -0.97
USP28-215ENST00000545608 SMOC1Q9H4F8 434 aa9.01□□□□□ -0.97
USP28-215ENST00000545608 MAGEF1Q9HAY2 307 aa9.01□□□□□ -0.97
USP28-215ENST00000545608 SMPD4Q9NXE4 827 aa9.01□□□□□ -0.97
USP28-215ENST00000545608 SERTAD1Q9UHV2 236 aa9.01□□□□□ -0.97
USP28-215ENST00000545608 CPQQ9Y646 472 aa9.01□□□□□ -0.97
USP28-215ENST00000545608 ATG2BQ96BY7 2078 aa9.01□□□□□ -0.97
USP28-215ENST00000545608 DENND4CQ5VZ89 1909 aa9□□□□□ -0.97
USP28-215ENST00000545608 LRRIQ3A6PVS8 624 aaPredicted RBP9□□□□□ -0.97
USP28-215ENST00000545608 K7EQS6 105 aa9□□□□□ -0.97
USP28-215ENST00000545608 KLRC4O43908 158 aa9□□□□□ -0.97
USP28-215ENST00000545608 PHACTR2O75167 634 aa9□□□□□ -0.97
USP28-215ENST00000545608 AKAP3O75969 853 aa9□□□□□ -0.97
USP28-215ENST00000545608 NFATC1O95644 943 aa9□□□□□ -0.97
USP28-215ENST00000545608 APBB3O95704 486 aa9□□□□□ -0.97
USP28-215ENST00000545608 OLFM2O95897 454 aa9□□□□□ -0.97
USP28-215ENST00000545608 OAS1P00973 400 aaKnown RBP9□□□□□ -0.97
USP28-215ENST00000545608 C4BPAP04003 597 aaKnown RBP9□□□□□ -0.97
USP28-215ENST00000545608 CYP17A1P05093 508 aa9□□□□□ -0.97
USP28-215ENST00000545608 ADRB1P08588 477 aa9□□□□□ -0.97
USP28-215ENST00000545608 ATICP31939 592 aa9□□□□□ -0.97
USP28-215ENST00000545608 SLC6A11P48066 632 aa9□□□□□ -0.97
USP28-215ENST00000545608 ME1P48163 572 aa9□□□□□ -0.97
USP28-215ENST00000545608 PPP3CCP48454 512 aa9□□□□□ -0.97
USP28-215ENST00000545608 PDE6CP51160 858 aa9□□□□□ -0.97
USP28-215ENST00000545608 VAC14Q08AM6 782 aa9□□□□□ -0.97
USP28-215ENST00000545608 MESP2Q0VG99 397 aa9□□□□□ -0.97
USP28-215ENST00000545608 IFRD2Q12894 506 aaPredicted RBP9□□□□□ -0.97
USP28-215ENST00000545608 STK4Q13043 487 aa9□□□□□ -0.97
USP28-215ENST00000545608 PKP1Q13835 747 aa9□□□□□ -0.97
USP28-215ENST00000545608 AASDHQ4L235 1098 aaPredicted RBP9□□□□□ -0.97
USP28-215ENST00000545608 PPM1JQ5JR12 505 aa9□□□□□ -0.97
USP28-215ENST00000545608 PLA2G2CQ5R387 149 aa9□□□□□ -0.97
USP28-215ENST00000545608 TDRD10Q5VZ19 366 aaKnown RBP9□□□□□ -0.97
USP28-215ENST00000545608 RHBDF2Q6PJF5 856 aa9□□□□□ -0.97
USP28-215ENST00000545608 PAQR9Q6ZVX9 377 aa9□□□□□ -0.97
USP28-215ENST00000545608 FILIP1Q7Z7B0 1213 aa9□□□□□ -0.97
USP28-215ENST00000545608 NUP93Q8N1F7 819 aa9□□□□□ -0.97
USP28-215ENST00000545608 B3GALNT2Q8NCR0 500 aa9□□□□□ -0.97
USP28-215ENST00000545608 PARD3BQ8TEW8 1205 aa9□□□□□ -0.97
USP28-215ENST00000545608 SYAP1Q96A49 352 aaPredicted RBP9□□□□□ -0.97
USP28-215ENST00000545608 ZC3H10Q96K80 434 aaKnown RBP9□□□□□ -0.97
USP28-215ENST00000545608 KCNK16Q96T55 309 aa9□□□□□ -0.97
USP28-215ENST00000545608 ELOVL4Q9GZR5 314 aa9□□□□□ -0.97
USP28-215ENST00000545608 SDCBP2Q9H190 292 aa9□□□□□ -0.97
USP28-215ENST00000545608 DUSP15Q9H1R2 295 aaPredicted RBP9□□□□□ -0.97
USP28-215ENST00000545608 SMYD3Q9H7B4 428 aa9□□□□□ -0.97
USP28-215ENST00000545608 DMAC2Q9NW81 257 aa9□□□□□ -0.97
USP28-215ENST00000545608 FAM13BQ9NYF5 915 aa9□□□□□ -0.97
USP28-215ENST00000545608 EHD2Q9NZN4 543 aa9□□□□□ -0.97
USP28-215ENST00000545608 CGNQ9P2M7 1197 aaKnown RBP9□□□□□ -0.97
USP28-215ENST00000545608 EBF1Q9UH73 591 aa9□□□□□ -0.97
USP28-215ENST00000545608 CHORDC1Q9UHD1 332 aaPredicted RBP9□□□□□ -0.97
USP28-215ENST00000545608 RCOR1Q9UKL0 485 aa9□□□□□ -0.97
USP28-215ENST00000545608 INVSQ9Y283 1065 aa9□□□□□ -0.97
USP28-215ENST00000545608 OBSL1O75147 1896 aa9□□□□□ -0.97
USP28-215ENST00000545608 GOLGA8CPA6NN73 597 aa8.99□□□□□ -0.97
USP28-215ENST00000545608 TM4SF5O14894 197 aa8.99□□□□□ -0.97
USP28-215ENST00000545608 FOXD2O60548 495 aaPredicted RBP8.99□□□□□ -0.97
USP28-215ENST00000545608 VNN1O95497 513 aa8.99□□□□□ -0.97
USP28-215ENST00000545608 MBL2P11226 248 aaPredicted RBP8.99□□□□□ -0.97
USP28-215ENST00000545608 YWHAQP27348 245 aa8.99□□□□□ -0.97
USP28-215ENST00000545608 DGKEP52429 567 aa8.99□□□□□ -0.97
USP28-215ENST00000545608 LIMK1P53667 647 aa8.99□□□□□ -0.97
USP28-215ENST00000545608 SEC13P55735 322 aa8.99□□□□□ -0.97
USP28-215ENST00000545608 DLG4P78352 724 aa8.99□□□□□ -0.97
USP28-215ENST00000545608 CLDN10P78369 228 aa8.99□□□□□ -0.97
USP28-215ENST00000545608 DNM1Q05193 864 aaKnown RBP8.99□□□□□ -0.97
USP28-215ENST00000545608 BIRC3Q13489 604 aa8.99□□□□□ -0.97
USP28-215ENST00000545608 DHCR24Q15392 516 aa8.99□□□□□ -0.97
USP28-215ENST00000545608 C2orf27AQ580R0 203 aa8.99□□□□□ -0.97
USP28-215ENST00000545608 C12orf40Q86WS4 652 aa8.99□□□□□ -0.97
USP28-215ENST00000545608 SFTPA1Q8IWL2 248 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms