RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 PACSIN1Q9BY11 444 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 CELF4Q9BZC1 486 aaKnown RBP5.49□□□□□ -1.53
USP28-213ENST00000544967 RAB34Q9BZG1 259 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 UNKQ9C0B0 810 aaKnown RBP5.49□□□□□ -1.53
USP28-213ENST00000544967 ABHD16BQ9H3Z7 469 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 Q9H521 79 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 NDE1Q9NXR1 346 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 UBAP1Q9NZ09 502 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 ANKFY1Q9P2R3 1169 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 SLC24A2Q9UI40 661 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 XPO7Q9UIA9 1087 aaKnown RBP5.49□□□□□ -1.53
USP28-213ENST00000544967 PACSIN2Q9UNF0 486 aaPredicted RBP5.49□□□□□ -1.53
USP28-213ENST00000544967 V9GY48 417 aaPredicted RBP5.49□□□□□ -1.53
USP28-213ENST00000544967 TMEM247A6NEH6 219 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 H3BNX3 289 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 TNPO2O14787 897 aaKnown RBP5.49□□□□□ -1.53
USP28-213ENST00000544967 KLF11O14901 512 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 TM9SF1O15321 606 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 SEPT4O43236 478 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 EXOC3O60645 756 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 GJB1P08034 283 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 EPB42P16452 691 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 CYP11B2P19099 503 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 S100A1P23297 94 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 FOXN2P32314 431 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 MAGEA10P43363 369 aaPredicted RBP5.49□□□□□ -1.53
USP28-213ENST00000544967 CHN2P52757 468 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 MTTPP55157 894 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 SNX16P57768 344 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 MRPS9P82933 396 aaKnown RBP5.49□□□□□ -1.53
USP28-213ENST00000544967 CDC16Q13042 620 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 MED21Q13503 144 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 CCDC142Q17RM4 750 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 ANKRD20A4Q4UJ75 823 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 DCAF12L1Q5VU92 463 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 IQSEC1Q6DN90 963 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 LLGL2Q6P1M3 1020 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 C1orf228Q6PIY5 440 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 RNF207Q6ZRF8 634 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 EPM2AIP1Q7L775 607 aaPredicted RBP5.49□□□□□ -1.53
USP28-213ENST00000544967 ANKS1BQ7Z6G8 1248 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 TRABD2AQ86V40 505 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 CHSY1Q86X52 802 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 MAP7D3Q8IWC1 876 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 PRELID2Q8N945 189 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 EFHD2Q96C19 240 aaPredicted RBP5.49□□□□□ -1.53
USP28-213ENST00000544967 PGBD4Q96DM1 585 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 NLRP4Q96MN2 994 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 YIPF2Q9BWQ6 316 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 PLVAPQ9BX97 442 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 VPS11Q9H270 941 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 C12orf49Q9H741 205 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 CROTQ9UKG9 612 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 PCDHA6Q9UN73 950 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 EXOC7Q9UPT5 735 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 TRAF3IP3Q9Y228 551 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 SBDSQ9Y3A5 250 aaKnown RBP eCLIP5.49□□□□□ -1.53
USP28-213ENST00000544967 PCDHA8Q9Y5H6 950 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 PCDHA1Q9Y5I3 950 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 SQORQ9Y6N5 450 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 H0YJX3 145 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 HAS3O00219 553 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 MEIS1O00470 390 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 ADCY6O43306 1168 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 HNRNPRO43390 633 aaKnown RBP5.49□□□□□ -1.53
USP28-213ENST00000544967 LGR5O75473 907 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 CIB2O75838 187 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 KRT36O76013 467 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 TM7SF2O76062 418 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 CDK4P11802 303 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 ZNF12P17014 697 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 PTPN2P17706 415 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 VARSP26640 1264 aaKnown RBP5.49□□□□□ -1.53
USP28-213ENST00000544967 SERPINB3P29508 390 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 GRK4P32298 578 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 CTHP32929 405 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 HSPA13P48723 471 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 HSD17B7P56937 341 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 PLOD1Q02809 727 aaPredicted RBP5.49□□□□□ -1.53
USP28-213ENST00000544967 CACNB2Q08289 660 aaPredicted RBP5.49□□□□□ -1.53
USP28-213ENST00000544967 TBL3Q12788 808 aaKnown RBP5.49□□□□□ -1.53
USP28-213ENST00000544967 SEL1L2Q5TEA6 688 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 ARMCX2Q7L311 632 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 ERI1Q8IV48 349 aaKnown RBP5.49□□□□□ -1.53
USP28-213ENST00000544967 PDCD7Q8N8D1 485 aaKnown RBP5.49□□□□□ -1.53
USP28-213ENST00000544967 ATP11CQ8NB49 1132 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 CATSPER1Q8NEC5 780 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 OR6Y1Q8NGX8 325 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 OLIG1Q8TAK6 271 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 CCDC110Q8TBZ0 833 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 NSUN6Q8TEA1 469 aaKnown RBP5.49□□□□□ -1.53
USP28-213ENST00000544967 JPH3Q8WXH2 748 aaPredicted RBP5.49□□□□□ -1.53
USP28-213ENST00000544967 RAD54LQ92698 747 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 SNF8Q96H20 258 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 FAM81BQ96LP2 452 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP5.49□□□□□ -1.53
USP28-213ENST00000544967 CCSER2Q9H7U1 834 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 PLGRKTQ9HBL7 147 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 AAASQ9NRG9 546 aa5.49□□□□□ -1.53
USP28-213ENST00000544967 SNX24Q9Y343 169 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms