RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 H0Y626 953 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 LINC01387J3KSC0 135 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 PROM1O43490 865 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 CCNKO75909 580 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 PLEKHA8P1O95397 391 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 TFRCP02786 760 aaKnown RBP9.22□□□□□ -0.93
VPS13D-212ENST00000543766 CYP3A4P08684 503 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 NAGAP17050 411 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 RPS6KB1P23443 525 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 CASP14P31944 242 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 GTF2A2P52657 109 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 COASYQ13057 564 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 RNF207Q6ZRF8 634 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 PDZD4Q76G19 769 aaPredicted RBP9.22□□□□□ -0.93
VPS13D-212ENST00000543766 CACNA2D4Q7Z3S7 1137 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 SESTD1Q86VW0 696 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 MOSPD2Q8NHP6 518 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 AK8Q96MA6 479 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 USP28Q96RU2 1077 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 RBM4BQ9BQ04 359 aaKnown RBP9.22□□□□□ -0.93
VPS13D-212ENST00000543766 KIFC3Q9BVG8 833 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 RBM4Q9BWF3 364 aaKnown RBP9.22□□□□□ -0.93
VPS13D-212ENST00000543766 EVA1AQ9H8M9 152 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 CAMTA1Q9Y6Y1 1673 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 CRB1P82279 1406 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 SALL1Q9NSC2 1324 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 CCDC162PA2VCL2 907 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 PRSS44E7EML9 344 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 PFDN6O15212 129 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 EOMESO95936 686 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 TP53P04637 393 aaPredicted RBP9.22□□□□□ -0.93
VPS13D-212ENST00000543766 NFKB2Q00653 900 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 XRCC4Q13426 336 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 ZYG11AQ6WRX3 759 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 ST8SIA2Q92186 375 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 COPS4Q9BT78 406 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 CINPQ9BW66 212 aaPredicted RBP9.22□□□□□ -0.93
VPS13D-212ENST00000543766 ACPTQ9BZG2 426 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 TRIM15Q9C019 465 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.22□□□□□ -0.93
VPS13D-212ENST00000543766 INTS7Q9NVH2 962 aaKnown RBP9.22□□□□□ -0.93
VPS13D-212ENST00000543766 INVSQ9Y283 1065 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 LEMD3Q9Y2U8 911 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 EMILIN1Q9Y6C2 1016 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 COMMD3-BMI1R4GMX3 469 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 MYH8P13535 1937 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 MST1RQ04912 1400 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 PSMD9O00233 223 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 HGSO14964 777 aaPredicted RBP9.22□□□□□ -0.93
VPS13D-212ENST00000543766 RB1P06400 928 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 SPATA31D3P0C874 917 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 UBTFL6P0CB48 400 aaPredicted RBP9.22□□□□□ -0.93
VPS13D-212ENST00000543766 MAPK3P27361 379 aaPredicted RBP9.22□□□□□ -0.93
VPS13D-212ENST00000543766 CRABP2P29373 138 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 FRG1Q14331 258 aaKnown RBP9.22□□□□□ -0.93
VPS13D-212ENST00000543766 RINT1Q6NUQ1 792 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 MZT2BQ6NZ67 158 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 SPATA31D4Q6ZUB0 917 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 TSPYL5Q86VY4 417 aaPredicted RBP9.22□□□□□ -0.93
VPS13D-212ENST00000543766 PTCD2Q8WV60 388 aaKnown RBP9.22□□□□□ -0.93
VPS13D-212ENST00000543766 INPP4AQ96PE3 977 aaPredicted RBP9.22□□□□□ -0.93
VPS13D-212ENST00000543766 PANX2Q96RD6 677 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 GLRX2Q9NS18 164 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 VAV3Q9UKW4 847 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 DCCP43146 1447 aa9.22□□□□□ -0.93
VPS13D-212ENST00000543766 B8ZZF3 427 aa9.21□□□□□ -0.93
VPS13D-212ENST00000543766 PLOD3O60568 738 aa9.21□□□□□ -0.93
VPS13D-212ENST00000543766 CCNDBP1O95273 360 aa9.21□□□□□ -0.93
VPS13D-212ENST00000543766 OCM2P0CE71 109 aa9.21□□□□□ -0.93
VPS13D-212ENST00000543766 OCMP0CE72 109 aaPredicted RBP9.21□□□□□ -0.93
VPS13D-212ENST00000543766 DDX6P26196 483 aaKnown RBP eCLIP9.21□□□□□ -0.931e-8■□□□□ 11.1
VPS13D-212ENST00000543766 CTNNA2P26232 953 aa9.21□□□□□ -0.93
VPS13D-212ENST00000543766 HSPA13P48723 471 aa9.21□□□□□ -0.93
VPS13D-212ENST00000543766 PMS1P54277 932 aaKnown RBP9.21□□□□□ -0.93
VPS13D-212ENST00000543766 RAD23BP54727 409 aa9.21□□□□□ -0.93
VPS13D-212ENST00000543766 HSPA14Q0VDF9 509 aa9.21□□□□□ -0.93
VPS13D-212ENST00000543766 EPHA7Q15375 998 aa9.21□□□□□ -0.93
VPS13D-212ENST00000543766 LACTB2Q53H82 288 aaPredicted RBP9.21□□□□□ -0.93
VPS13D-212ENST00000543766 PYHIN1Q6K0P9 492 aa9.21□□□□□ -0.93
VPS13D-212ENST00000543766 ZCCHC12Q6PEW1 402 aa9.21□□□□□ -0.93
VPS13D-212ENST00000543766 FSIP1Q8NA03 581 aa9.21□□□□□ -0.93
VPS13D-212ENST00000543766 PLBD2Q8NHP8 589 aa9.21□□□□□ -0.93
VPS13D-212ENST00000543766 DIS3LQ8TF46 1054 aaKnown RBP9.21□□□□□ -0.93
VPS13D-212ENST00000543766 KCTD13Q8WZ19 329 aa9.21□□□□□ -0.93
VPS13D-212ENST00000543766 ANKS1AQ92625 1134 aa9.21□□□□□ -0.93
VPS13D-212ENST00000543766 RNF34Q969K3 372 aa9.21□□□□□ -0.93
VPS13D-212ENST00000543766 SAV1Q9H4B6 383 aaPredicted RBP9.21□□□□□ -0.93
VPS13D-212ENST00000543766 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.21□□□□□ -0.93
VPS13D-212ENST00000543766 EVA1BQ9NVM1 165 aa9.21□□□□□ -0.93
VPS13D-212ENST00000543766 FAM153AQ9UHL3 310 aa9.21□□□□□ -0.93
VPS13D-212ENST00000543766 USP20Q9Y2K6 914 aa9.21□□□□□ -0.93
VPS13D-212ENST00000543766 FSCN2O14926 492 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 JAK2O60674 1132 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 ULK1O75385 1050 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 GOSR1O95249 250 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 KRT6AP02538 564 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 KRT6BP04259 564 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 ZNF18P17022 549 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 NDUFA8P51970 172 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 ODF1Q14990 250 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms