RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 PXNP49023 591 aaPredicted RBP13.91□□□□□ -0.18
RTN3-212ENST00000543123 VAMP7P51809 220 aa13.91□□□□□ -0.18
RTN3-212ENST00000543123 NDUFA8P51970 172 aa13.91□□□□□ -0.18
RTN3-212ENST00000543123 SLC5A3P53794 718 aa13.91□□□□□ -0.18
RTN3-212ENST00000543123 ATXN1P54253 815 aaKnown RBP13.91□□□□□ -0.18
RTN3-212ENST00000543123 DMC1Q14565 340 aa13.91□□□□□ -0.18
RTN3-212ENST00000543123 ELF2Q15723 593 aa13.91□□□□□ -0.18
RTN3-212ENST00000543123 NFIL3Q16649 462 aa13.91□□□□□ -0.18
RTN3-212ENST00000543123 PREPLQ4J6C6 727 aaPredicted RBP13.91□□□□□ -0.18
RTN3-212ENST00000543123 SNX30Q5VWJ9 437 aa13.91□□□□□ -0.18
RTN3-212ENST00000543123 SV2AQ7L0J3 742 aa13.91□□□□□ -0.18
RTN3-212ENST00000543123 ACOT1Q86TX2 421 aa13.91□□□□□ -0.18
RTN3-212ENST00000543123 C12orf50Q8NA57 414 aaPredicted RBP13.91□□□□□ -0.18
RTN3-212ENST00000543123 HHIPQ96QV1 700 aa13.91□□□□□ -0.18
RTN3-212ENST00000543123 RNF38Q9H0F5 515 aa13.91□□□□□ -0.18
RTN3-212ENST00000543123 LINC00597Q9H2U6 94 aa13.91□□□□□ -0.18
RTN3-212ENST00000543123 TMEM30AQ9NV96 361 aa13.91□□□□□ -0.18
RTN3-212ENST00000543123 EBF1Q9UH73 591 aa13.91□□□□□ -0.18
RTN3-212ENST00000543123 NCOR2Q9Y618 2525 aa13.91□□□□□ -0.18
RTN3-212ENST00000543123 MED19A0JLT2 244 aaPredicted RBP13.9□□□□□ -0.18
RTN3-212ENST00000543123 SLC30A4O14863 429 aa13.9□□□□□ -0.18
RTN3-212ENST00000543123 EPN2O95208 641 aa13.9□□□□□ -0.18
RTN3-212ENST00000543123 HLA-DRAP01903 254 aa13.9□□□□□ -0.18
RTN3-212ENST00000543123 FAM200BP0CF97 657 aa13.9□□□□□ -0.18
RTN3-212ENST00000543123 DLG4P78352 724 aa13.9□□□□□ -0.18
RTN3-212ENST00000543123 GOLGA8FQ08AF8 430 aa13.9□□□□□ -0.18
RTN3-212ENST00000543123 GOLGA8DPQ0D2H9 430 aa13.9□□□□□ -0.18
RTN3-212ENST00000543123 DHCR24Q15392 516 aa13.9□□□□□ -0.18
RTN3-212ENST00000543123 HSF5Q4G112 596 aaPredicted RBP13.9□□□□□ -0.18
RTN3-212ENST00000543123 NAIF1Q69YI7 327 aaPredicted RBP13.9□□□□□ -0.18
RTN3-212ENST00000543123 FAM186BQ8IYM0 893 aa13.9□□□□□ -0.18
RTN3-212ENST00000543123 FUKQ8N0W3 1084 aa13.9□□□□□ -0.18
RTN3-212ENST00000543123 CRYBG2Q8N1P7 616 aa13.9□□□□□ -0.18
RTN3-212ENST00000543123 GUF1Q8N442 669 aaKnown RBP13.9□□□□□ -0.18
RTN3-212ENST00000543123 TSTD1Q8NFU3 115 aa13.9□□□□□ -0.18
RTN3-212ENST00000543123 SLC2A14Q8TDB8 520 aa13.9□□□□□ -0.18
RTN3-212ENST00000543123 DDX1Q92499 740 aaKnown RBP13.9□□□□□ -0.18
RTN3-212ENST00000543123 KCNK16Q96T55 309 aa13.9□□□□□ -0.18
RTN3-212ENST00000543123 PNKPQ96T60 521 aa13.9□□□□□ -0.18
RTN3-212ENST00000543123 DUSP9Q99956 384 aaKnown RBP13.9□□□□□ -0.18
RTN3-212ENST00000543123 CYP3A43Q9HB55 503 aa13.9□□□□□ -0.18
RTN3-212ENST00000543123 TLR8Q9NR97 1041 aaKnown RBP13.9□□□□□ -0.18
RTN3-212ENST00000543123 SH3BP1Q9Y3L3 701 aa13.9□□□□□ -0.18
RTN3-212ENST00000543123 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.9□□□□□ -0.18
RTN3-212ENST00000543123 SPAG17Q6Q759 2223 aa13.89□□□□□ -0.19
RTN3-212ENST00000543123 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.89□□□□□ -0.19
RTN3-212ENST00000543123 FAM92AA1XBS5 289 aa13.89□□□□□ -0.19
RTN3-212ENST00000543123 TNFRSF10BO14763 440 aa13.89□□□□□ -0.19
RTN3-212ENST00000543123 COCHO43405 550 aa13.89□□□□□ -0.19
RTN3-212ENST00000543123 STX10O60499 249 aa13.89□□□□□ -0.19
RTN3-212ENST00000543123 ALDH1A2O94788 518 aa13.89□□□□□ -0.19
RTN3-212ENST00000543123 RHOBTB1O94844 696 aa13.89□□□□□ -0.19
RTN3-212ENST00000543123 APODP05090 189 aa13.89□□□□□ -0.19
RTN3-212ENST00000543123 ADH5P11766 374 aa13.89□□□□□ -0.19
RTN3-212ENST00000543123 PSMC2P35998 433 aaKnown RBP13.89□□□□□ -0.19
RTN3-212ENST00000543123 OPRD1P41143 372 aa13.89□□□□□ -0.19
RTN3-212ENST00000543123 ASPAP45381 313 aa13.89□□□□□ -0.19
RTN3-212ENST00000543123 DGKEP52429 567 aa13.89□□□□□ -0.19
RTN3-212ENST00000543123 NDST1P52848 882 aa13.89□□□□□ -0.19
RTN3-212ENST00000543123 MRPS21P82921 87 aaKnown RBP13.89□□□□□ -0.19
RTN3-212ENST00000543123 ZXDBP98169 803 aa13.89□□□□□ -0.19
RTN3-212ENST00000543123 INCA1Q0VD86 236 aa13.89□□□□□ -0.19
RTN3-212ENST00000543123 DPYDQ12882 1025 aa13.89□□□□□ -0.19
RTN3-212ENST00000543123 AASDHQ4L235 1098 aaPredicted RBP13.89□□□□□ -0.19
RTN3-212ENST00000543123 BTBD8Q5XKL5 378 aa13.89□□□□□ -0.19
RTN3-212ENST00000543123 KRBA2Q6ZNG9 492 aa13.89□□□□□ -0.19
RTN3-212ENST00000543123 NUDT18Q6ZVK8 323 aa13.89□□□□□ -0.19
RTN3-212ENST00000543123 KBTBD6Q86V97 674 aa13.89□□□□□ -0.19
RTN3-212ENST00000543123 ADGRG2Q8IZP9 1017 aa13.89□□□□□ -0.19
RTN3-212ENST00000543123 TTC39CQ8N584 583 aa13.89□□□□□ -0.19
RTN3-212ENST00000543123 SCAMP5Q8TAC9 235 aa13.89□□□□□ -0.19
RTN3-212ENST00000543123 USP33Q8TEY7 942 aa13.89□□□□□ -0.19
RTN3-212ENST00000543123 ZC3H10Q96K80 434 aaKnown RBP13.89□□□□□ -0.19
RTN3-212ENST00000543123 NT5C1AQ9BXI3 368 aa13.89□□□□□ -0.19
RTN3-212ENST00000543123 SDCBP2Q9H190 292 aa13.89□□□□□ -0.19
RTN3-212ENST00000543123 CSNK1G1Q9HCP0 422 aa13.89□□□□□ -0.19
RTN3-212ENST00000543123 IL37Q9NZH6 218 aa13.89□□□□□ -0.19
RTN3-212ENST00000543123 ZDHHC11BP0C7U3 371 aa13.88□□□□□ -0.19
RTN3-212ENST00000543123 CCDC130P13994 396 aa13.88□□□□□ -0.19
RTN3-212ENST00000543123 GTF2H1P32780 548 aa13.88□□□□□ -0.19
RTN3-212ENST00000543123 GRIA2P42262 883 aa13.88□□□□□ -0.19
RTN3-212ENST00000543123 SEC13P55735 322 aa13.88□□□□□ -0.19
RTN3-212ENST00000543123 GAD2Q05329 585 aa13.88□□□□□ -0.19
RTN3-212ENST00000543123 EDRF1Q3B7T1 1238 aa13.88□□□□□ -0.19
RTN3-212ENST00000543123 USP39Q53GS9 565 aaKnown RBP13.88□□□□□ -0.19
RTN3-212ENST00000543123 C2orf27AQ580R0 203 aa13.88□□□□□ -0.19
RTN3-212ENST00000543123 PAQR9Q6ZVX9 377 aa13.88□□□□□ -0.19
RTN3-212ENST00000543123 EZH1Q92800 747 aaPredicted RBP13.88□□□□□ -0.19
RTN3-212ENST00000543123 NIF3L1Q9GZT8 377 aa13.88□□□□□ -0.19
RTN3-212ENST00000543123 ARRDC1-AS1Q9H2J1 176 aa13.88□□□□□ -0.19
RTN3-212ENST00000543123 PNPLA8Q9NP80 782 aa13.88□□□□□ -0.19
RTN3-212ENST00000543123 ARHGEF4Q9NR80 690 aa13.88□□□□□ -0.19
RTN3-212ENST00000543123 FAM49BQ9NUQ9 324 aa13.88□□□□□ -0.19
RTN3-212ENST00000543123 RMND1Q9NWS8 449 aa13.88□□□□□ -0.19
RTN3-212ENST00000543123 GMIPQ9P107 970 aa13.88□□□□□ -0.19
RTN3-212ENST00000543123 CHORDC1Q9UHD1 332 aaPredicted RBP13.88□□□□□ -0.19
RTN3-212ENST00000543123 MMP17Q9ULZ9 603 aa13.88□□□□□ -0.19
RTN3-212ENST00000543123 RALGAPA1Q6GYQ0 2036 aa13.88□□□□□ -0.19
RTN3-212ENST00000543123 KIAA1549LQ6ZVL6 1849 aa13.87□□□□□ -0.19
RTN3-212ENST00000543123 K7EQS6 105 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms