RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, human

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-210	ENST00000543016	TDRD12	Q587J7	1177 aa	Known RBP	12.82	□□□□□ -0.36
DDX55-210	ENST00000543016	PRSS36	Q5K4E3	855 aa		12.82	□□□□□ -0.36
DDX55-210	ENST00000543016	TAF3	Q5VWG9	929 aa		12.82	□□□□□ -0.36
DDX55-210	ENST00000543016	HGSNAT	Q68CP4	663 aa		12.82	□□□□□ -0.36
DDX55-210	ENST00000543016	PTCRA	Q6ISU1	281 aa	Predicted RBP	12.82	□□□□□ -0.36
DDX55-210	ENST00000543016	OTOP3	Q7RTS5	596 aa		12.82	□□□□□ -0.36
DDX55-210	ENST00000543016	TADA2B	Q86TJ2	420 aa		12.82	□□□□□ -0.36
DDX55-210	ENST00000543016	ERICH1	Q86X53	443 aa		12.82	□□□□□ -0.36
DDX55-210	ENST00000543016	WDTC1	Q8N5D0	677 aa		12.82	□□□□□ -0.36
DDX55-210	ENST00000543016	C1orf131	Q8NDD1	294 aa	Known RBP	12.82	□□□□□ -0.36
DDX55-210	ENST00000543016	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	12.82	□□□□□ -0.36
DDX55-210	ENST00000543016	GPR152	Q8TDT2	470 aa		12.82	□□□□□ -0.36
DDX55-210	ENST00000543016	SLC20A1	Q8WUM9	679 aa		12.82	□□□□□ -0.36
DDX55-210	ENST00000543016	MRPS31	Q92665	395 aa	Known RBP	12.82	□□□□□ -0.36
DDX55-210	ENST00000543016	FBXO32	Q969P5	355 aa		12.82	□□□□□ -0.36
DDX55-210	ENST00000543016	VCPIP1	Q96JH7	1222 aa		12.82	□□□□□ -0.36
DDX55-210	ENST00000543016	PANX2	Q96RD6	677 aa		12.82	□□□□□ -0.36
DDX55-210	ENST00000543016	PHF7	Q9BWX1	381 aa	Predicted RBP	12.82	□□□□□ -0.36
DDX55-210	ENST00000543016	IL21	Q9HBE4	155 aa		12.82	□□□□□ -0.36
DDX55-210	ENST00000543016	TLR8	Q9NR97	1041 aa	Known RBP	12.82	□□□□□ -0.36
DDX55-210	ENST00000543016	TMEM51	Q9NW97	253 aa		12.82	□□□□□ -0.36
DDX55-210	ENST00000543016	CLIC5	Q9NZA1	410 aa		12.82	□□□□□ -0.36
DDX55-210	ENST00000543016	PRKAG3	Q9UGI9	489 aa		12.82	□□□□□ -0.36
DDX55-210	ENST00000543016	MAGED2	Q9UNF1	606 aa	Predicted RBP	12.82	□□□□□ -0.36
DDX55-210	ENST00000543016	FARP1	Q9Y4F1	1045 aa	Predicted RBP	12.82	□□□□□ -0.36
DDX55-210	ENST00000543016	C19orf67	A6NJJ6	358 aa		12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	GLI1	P08151	1106 aa		12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	ZDHHC11B	P0C7U3	371 aa		12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	UNG	P13051	313 aa	Predicted RBP	12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	SCNN1A	P37088	669 aa		12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	NSF	P46459	744 aa	Known RBP	12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	GABRB2	P47870	512 aa		12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	ADK	P55263	362 aa	Known RBP	12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	USP46	P62068	366 aa		12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	NOMO3	P69849	1222 aa		12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	CENPC	Q03188	943 aa		12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	MTMR3	Q13615	1198 aa		12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	CLUL1	Q15846	466 aa		12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	CLEC16A	Q2KHT3	1053 aa		12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	E4F1	Q66K89	784 aa	Predicted RBP	12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	GAREM2	Q75VX8	874 aa		12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	BEND5	Q7L4P6	421 aa		12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	ZNF571	Q7Z3V5	609 aa	Predicted RBP	12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	PHF13	Q86YI8	300 aa	Predicted RBP	12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	PASD1	Q8IV76	773 aa		12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	PLCD3	Q8N3E9	789 aa		12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	TC2N	Q8N9U0	490 aa		12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	SCAMP5	Q8TAC9	235 aa		12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	GOLGA1	Q92805	767 aa		12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	ACSF2	Q96CM8	615 aa	Predicted RBP	12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	C18orf8	Q96DM3	657 aa		12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	APOL5	Q9BWW9	433 aa		12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	ATXN3L	Q9H3M9	355 aa		12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	SYNC	Q9H7C4	482 aa		12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	ST7	Q9NRC1	585 aa		12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	ASNSD1	Q9NWL6	643 aa		12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	HCFC1R1	Q9NWW0	138 aa		12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	WDR35	Q9P2L0	1181 aa		12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	STRIP2	Q9ULQ0	834 aa		12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	NR2E1	Q9Y466	385 aa		12.81	□□□□□ -0.36
DDX55-210	ENST00000543016	MYH10	P35580	1976 aa		12.8	□□□□□ -0.36
DDX55-210	ENST00000543016	ZNF840P	A6NDX5	716 aa		12.8	□□□□□ -0.36
DDX55-210	ENST00000543016	TULP2	O00295	520 aa		12.8	□□□□□ -0.36
DDX55-210	ENST00000543016	CALB1	P05937	261 aa		12.8	□□□□□ -0.36
DDX55-210	ENST00000543016	CFH	P08603	1231 aa		12.8	□□□□□ -0.36
DDX55-210	ENST00000543016	RALA	P11233	206 aa		12.8	□□□□□ -0.36
DDX55-210	ENST00000543016	MMP8	P22894	467 aa		12.8	□□□□□ -0.36
DDX55-210	ENST00000543016	RGS7	P49802	495 aa		12.8	□□□□□ -0.36
DDX55-210	ENST00000543016	ADIG	Q0VDE8	80 aa		12.8	□□□□□ -0.36
DDX55-210	ENST00000543016	EFHC1	Q5JVL4	640 aa		12.8	□□□□□ -0.36
DDX55-210	ENST00000543016	NAA35	Q5VZE5	725 aa		12.8	□□□□□ -0.36
DDX55-210	ENST00000543016	ACAD10	Q6JQN1	1059 aa		12.8	□□□□□ -0.36
DDX55-210	ENST00000543016	KLHDC10	Q6PID8	442 aa		12.8	□□□□□ -0.36
DDX55-210	ENST00000543016	TOGARAM2	Q6ZUX3	1019 aa		12.8	□□□□□ -0.36
DDX55-210	ENST00000543016	GPRIN1	Q7Z2K8	1008 aa		12.8	□□□□□ -0.36
DDX55-210	ENST00000543016	HS6ST3	Q8IZP7	471 aa		12.8	□□□□□ -0.36
DDX55-210	ENST00000543016	SLC30A5	Q8TAD4	765 aa		12.8	□□□□□ -0.36
DDX55-210	ENST00000543016	SHKBP1	Q8TBC3	707 aa		12.8	□□□□□ -0.36
DDX55-210	ENST00000543016	TRIM11	Q96F44	468 aa		12.8	□□□□□ -0.36
DDX55-210	ENST00000543016	ULBP1	Q9BZM6	244 aa		12.8	□□□□□ -0.36
DDX55-210	ENST00000543016	POMK	Q9H5K3	350 aa		12.8	□□□□□ -0.36
DDX55-210	ENST00000543016	TASP1	Q9H6P5	420 aa		12.8	□□□□□ -0.36
DDX55-210	ENST00000543016	ZNF334	Q9HCZ1	680 aa	Predicted RBP	12.8	□□□□□ -0.36
DDX55-210	ENST00000543016	SEPT11	Q9NVA2	429 aa	Known RBP	12.8	□□□□□ -0.36
DDX55-210	ENST00000543016	CDH7	Q9ULB5	785 aa		12.8	□□□□□ -0.36
DDX55-210	ENST00000543016		A0A1W2PRU2	124 aa		12.79	□□□□□ -0.36
DDX55-210	ENST00000543016		E5RJQ4	531 aa		12.79	□□□□□ -0.36
DDX55-210	ENST00000543016	MOSPD3	O75425	235 aa		12.79	□□□□□ -0.36
DDX55-210	ENST00000543016	USP17L7	P0C7H9	530 aa		12.79	□□□□□ -0.36
DDX55-210	ENST00000543016	SKIL	P12757	684 aa		12.79	□□□□□ -0.36
DDX55-210	ENST00000543016	LCP1	P13796	627 aa		12.79	□□□□□ -0.36
DDX55-210	ENST00000543016	FECH	P22830	423 aa		12.79	□□□□□ -0.36
DDX55-210	ENST00000543016	SSTR3	P32745	418 aa	Predicted RBP	12.79	□□□□□ -0.36
DDX55-210	ENST00000543016	GSC	P56915	257 aa	Predicted RBP	12.79	□□□□□ -0.36
DDX55-210	ENST00000543016	DAOA	P59103	153 aa		12.79	□□□□□ -0.36
DDX55-210	ENST00000543016	NTHL1	P78549	312 aa		12.79	□□□□□ -0.36
DDX55-210	ENST00000543016	IFRD2	Q12894	506 aa	Predicted RBP	12.79	□□□□□ -0.36
DDX55-210	ENST00000543016	ZNF268	Q14587	947 aa	Predicted RBP	12.79	□□□□□ -0.36
DDX55-210	ENST00000543016	PTPN20	Q4JDL3	420 aa		12.79	□□□□□ -0.36
DDX55-210	ENST00000543016	HECTD3	Q5T447	861 aa		12.79	□□□□□ -0.36

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