RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 CCT6BQ92526 530 aa10.3□□□□□ -0.76
SS18-205ENST00000542420 PRMT1Q99873 361 aaKnown RBP10.3□□□□□ -0.76
SS18-205ENST00000542420 C11orf84Q9BUA3 381 aaPredicted RBP10.3□□□□□ -0.76
SS18-205ENST00000542420 ACSS3Q9H6R3 686 aa10.3□□□□□ -0.76
SS18-205ENST00000542420 SF3B1O75533 1304 aaKnown RBP eCLIP10.3□□□□□ -0.764e-6■■■■■ 96
SS18-205ENST00000542420 CCT8L1PA6NM43 557 aa10.3□□□□□ -0.76
SS18-205ENST00000542420 E5RJQ4 531 aa10.3□□□□□ -0.76
SS18-205ENST00000542420 SNX3O60493 162 aa10.3□□□□□ -0.76
SS18-205ENST00000542420 DNAJC8O75937 253 aaPredicted RBP10.3□□□□□ -0.76
SS18-205ENST00000542420 IGHA2P01877 340 aa10.3□□□□□ -0.76
SS18-205ENST00000542420 RBP3P10745 1247 aa10.3□□□□□ -0.76
SS18-205ENST00000542420 WARSP23381 471 aaKnown RBP10.3□□□□□ -0.76
SS18-205ENST00000542420 LRPAP1P30533 357 aa10.3□□□□□ -0.76
SS18-205ENST00000542420 HOXD11P31277 338 aaPredicted RBP10.3□□□□□ -0.76
SS18-205ENST00000542420 RPL22P35268 128 aaKnown RBP10.3□□□□□ -0.76
SS18-205ENST00000542420 VPS41P49754 854 aa10.3□□□□□ -0.76
SS18-205ENST00000542420 CRYBB1P53674 252 aaPredicted RBP10.3□□□□□ -0.76
SS18-205ENST00000542420 IFT88Q13099 833 aa10.3□□□□□ -0.76
SS18-205ENST00000542420 MFSD10Q14728 455 aa10.3□□□□□ -0.76
SS18-205ENST00000542420 GJC2Q5T442 439 aaPredicted RBP10.3□□□□□ -0.76
SS18-205ENST00000542420 UBAP2Q5T6F2 1119 aaKnown RBP10.3□□□□□ -0.76
SS18-205ENST00000542420 STRADAQ7RTN6 431 aa10.3□□□□□ -0.76
SS18-205ENST00000542420 LRRC34Q8IZ02 419 aa10.3□□□□□ -0.76
SS18-205ENST00000542420 DYDC1Q8WWB3 177 aa10.3□□□□□ -0.76
SS18-205ENST00000542420 TMEM121Q9BTD3 319 aa10.3□□□□□ -0.76
SS18-205ENST00000542420 TSC2P49815 1807 aa10.3□□□□□ -0.76
SS18-205ENST00000542420 COL4A4P53420 1690 aaPredicted RBP10.3□□□□□ -0.76
SS18-205ENST00000542420 TRIP12Q14669 1992 aaPredicted RBP10.3□□□□□ -0.76
SS18-205ENST00000542420 SMIM23A6NLE4 172 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 APOL1O14791 398 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 SUN1O94901 812 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 CYP2C9P11712 490 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 PSEN2P49810 448 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 CDH6P55285 790 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 GEMIN4P57678 1058 aaKnown RBP10.29□□□□□ -0.76
SS18-205ENST00000542420 CCDC15Q0P6D6 951 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 PDIA2Q13087 525 aaKnown RBP10.29□□□□□ -0.76
SS18-205ENST00000542420 DPYSL2Q16555 572 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 CCDC14Q49A88 953 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 CCDC38Q502W7 563 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 ANKRD20A8PQ5CZ79 823 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 SPDYAQ5MJ70 313 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 FBXO47Q5MNV8 452 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 ADGRD1Q6QNK2 874 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 BZW1Q7L1Q6 419 aaKnown RBP10.29□□□□□ -0.76
SS18-205ENST00000542420 CDKL3Q8IVW4 592 aaPredicted RBP10.29□□□□□ -0.76
SS18-205ENST00000542420 MCUQ8NE86 351 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 NPLOC4Q8TAT6 608 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 ZNF668Q96K58 619 aaPredicted RBP10.29□□□□□ -0.76
SS18-205ENST00000542420 TNIP3Q96KP6 325 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 C9orf72Q96LT7 481 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 SNTG2Q9NY99 539 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 TJP2Q9UDY2 1190 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 MCM8Q9UJA3 840 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 SCN10AQ9Y5Y9 1956 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 KLHL33A6NCF5 533 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 HACD1B0YJ81 288 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 RASA4BC9J798 803 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 KIF3CO14782 793 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 RASA4O43374 803 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 ZWINTO95229 277 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 GCAP28676 217 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 TAF6P49848 677 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 LIG3P49916 1009 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 AIF1P55008 147 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 KRT81Q14533 505 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 LLGL1Q15334 1064 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 EFHC1Q5JVL4 640 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 PPP1R26Q5T8A7 1209 aaPredicted RBP10.29□□□□□ -0.76
SS18-205ENST00000542420 TTC30AQ86WT1 665 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 EMC1Q8N766 993 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 GLIS1Q8NBF1 620 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 UHMK1Q8TAS1 419 aaKnown RBP10.29□□□□□ -0.76
SS18-205ENST00000542420 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.29□□□□□ -0.76
SS18-205ENST00000542420 DENND1AQ8TEH3 1009 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 PYROXD1Q8WU10 500 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 PEBP4Q96S96 227 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 SMC6Q96SB8 1091 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 SETD4Q9NVD3 440 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 HAUS2Q9NVX0 235 aa10.29□□□□□ -0.76
SS18-205ENST00000542420 USP15Q9Y4E8 981 aaPredicted RBP10.29□□□□□ -0.76
SS18-205ENST00000542420 ZNF865P0CJ78 1059 aaPredicted RBP10.28□□□□□ -0.76
SS18-205ENST00000542420 STX2P32856 288 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 SPARCL1Q14515 664 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 KCNJ11Q14654 390 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 SKIDA1Q1XH10 827 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 TAF2Q6P1X5 1199 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 HACE1Q8IYU2 909 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 UBA3Q8TBC4 463 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 SOCS4Q8WXH5 440 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 KCTD13Q8WZ19 329 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 KHSRPQ92945 711 aaKnown RBP eCLIP10.28□□□□□ -0.763e-7■■■■□ 20.1
SS18-205ENST00000542420 ZBTB10Q96DT7 871 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 MRPL45Q9BRJ2 306 aaKnown RBP10.28□□□□□ -0.76
SS18-205ENST00000542420 TRIM6Q9C030 488 aaPredicted RBP10.28□□□□□ -0.76
SS18-205ENST00000542420 PCDH18Q9HCL0 1135 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.28□□□□□ -0.76
SS18-205ENST00000542420 SNX9Q9Y5X1 595 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 CFAP73A6NFT4 308 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 MANSC4A6NHS7 340 aaPredicted RBP10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms