RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-210ENST00000540975 HLTFQ14527 1009 aaKnown RBP eCLIP7.28□□□□□ -1.24
YBX3-210ENST00000540975 SAFBQ15424 915 aaKnown RBP eCLIP7.28□□□□□ -1.24
YBX3-210ENST00000540975 DPY19L3Q6ZPD9 716 aa7.28□□□□□ -1.24
YBX3-210ENST00000540975 RNF44Q7L0R7 432 aa7.28□□□□□ -1.24
YBX3-210ENST00000540975 SMCR8Q8TEV9 937 aaPredicted RBP7.28□□□□□ -1.24
YBX3-210ENST00000540975 VN1R3Q9BXE9 311 aa7.28□□□□□ -1.24
YBX3-210ENST00000540975 TBC1D23Q9NUY8 699 aa7.28□□□□□ -1.24
YBX3-210ENST00000540975 ZNF212Q9UDV6 495 aa7.28□□□□□ -1.24
YBX3-210ENST00000540975 AQP7P3A6NL99 342 aa7.27□□□□□ -1.25
YBX3-210ENST00000540975 A1BGP04217 495 aa7.27□□□□□ -1.25
YBX3-210ENST00000540975 NHLRC4P0CG21 123 aaPredicted RBP7.27□□□□□ -1.25
YBX3-210ENST00000540975 MYCLP12524 364 aaPredicted RBP7.27□□□□□ -1.25
YBX3-210ENST00000540975 SLC5A1P13866 664 aa7.27□□□□□ -1.25
YBX3-210ENST00000540975 ZNF543Q08ER8 600 aa7.27□□□□□ -1.25
YBX3-210ENST00000540975 STK3Q13188 491 aa7.27□□□□□ -1.25
YBX3-210ENST00000540975 PROSER3Q2NL68 480 aa7.27□□□□□ -1.25
YBX3-210ENST00000540975 TMEM119Q4V9L6 283 aa7.27□□□□□ -1.25
YBX3-210ENST00000540975 SIRT6Q8N6T7 355 aa7.27□□□□□ -1.25
YBX3-210ENST00000540975 CTHRC1Q96CG8 243 aa7.27□□□□□ -1.25
YBX3-210ENST00000540975 INO80BQ9C086 356 aaPredicted RBP7.27□□□□□ -1.25
YBX3-210ENST00000540975 PNPLA8Q9NP80 782 aa7.27□□□□□ -1.25
YBX3-210ENST00000540975 AMFRQ9UKV5 643 aa7.27□□□□□ -1.25
YBX3-210ENST00000540975 FRMD4BQ9Y2L6 1034 aa7.27□□□□□ -1.25
YBX3-210ENST00000540975 APAF1O14727 1248 aa7.26□□□□□ -1.25
YBX3-210ENST00000540975 ANXA2P07355 339 aaKnown RBP7.26□□□□□ -1.25
YBX3-210ENST00000540975 PGDP52209 483 aa7.26□□□□□ -1.25
YBX3-210ENST00000540975 KCNAB1Q14722 419 aa7.26□□□□□ -1.25
YBX3-210ENST00000540975 TERB1Q8NA31 727 aa7.26□□□□□ -1.25
YBX3-210ENST00000540975 ATP11CQ8NB49 1132 aa7.26□□□□□ -1.25
YBX3-210ENST00000540975 CYP2W1Q8TAV3 490 aa7.26□□□□□ -1.25
YBX3-210ENST00000540975 SMIM22K7EJ46 135 aa7.25□□□□□ -1.25
YBX3-210ENST00000540975 AGPSO00116 658 aa7.25□□□□□ -1.25
YBX3-210ENST00000540975 CES2O00748 559 aa7.25□□□□□ -1.25
YBX3-210ENST00000540975 KPNA5O15131 536 aa7.25□□□□□ -1.25
YBX3-210ENST00000540975 FGAP02671 866 aa7.25□□□□□ -1.25
YBX3-210ENST00000540975 PARP1P09874 1014 aaKnown RBP7.25□□□□□ -1.25
YBX3-210ENST00000540975 GNALP38405 381 aa7.25□□□□□ -1.25
YBX3-210ENST00000540975 RNASE12Q5GAN4 147 aaKnown RBP7.25□□□□□ -1.25
YBX3-210ENST00000540975 TRIM72Q6ZMU5 477 aa7.25□□□□□ -1.25
YBX3-210ENST00000540975 CCAR1Q8IX12 1150 aaKnown RBP7.25□□□□□ -1.25
YBX3-210ENST00000540975 PJA1Q8NG27 643 aa7.25□□□□□ -1.25
YBX3-210ENST00000540975 VOPP1Q96AW1 172 aa7.25□□□□□ -1.25
YBX3-210ENST00000540975 NAA15Q9BXJ9 866 aaKnown RBP7.25□□□□□ -1.25
YBX3-210ENST00000540975 LINC01548A6NM66 108 aa7.24□□□□□ -1.25
YBX3-210ENST00000540975 AREL1O15033 823 aa7.24□□□□□ -1.25
YBX3-210ENST00000540975 EXOC3O60645 756 aa7.24□□□□□ -1.25
YBX3-210ENST00000540975 PHKG2P15735 406 aa7.24□□□□□ -1.25
YBX3-210ENST00000540975 FPR3P25089 353 aa7.24□□□□□ -1.25
YBX3-210ENST00000540975 CASP5P51878 434 aa7.24□□□□□ -1.25
YBX3-210ENST00000540975 SUMO2P61956 95 aaKnown RBP7.24□□□□□ -1.25
YBX3-210ENST00000540975 PSG6Q00889 435 aa7.24□□□□□ -1.25
YBX3-210ENST00000540975 FOXF2Q12947 444 aa7.24□□□□□ -1.25
YBX3-210ENST00000540975 MANEALQ5VSG8 457 aa7.24□□□□□ -1.25
YBX3-210ENST00000540975 PRAMEF17Q5VTA0 474 aa7.24□□□□□ -1.25
YBX3-210ENST00000540975 ZNF782Q6ZMW2 699 aaPredicted RBP7.24□□□□□ -1.25
YBX3-210ENST00000540975 SFTPA1Q8IWL2 248 aa7.24□□□□□ -1.25
YBX3-210ENST00000540975 SRRM1Q8IYB3 904 aaKnown RBP7.24□□□□□ -1.25
YBX3-210ENST00000540975 VGLL2Q8N8G2 317 aa7.24□□□□□ -1.25
YBX3-210ENST00000540975 IQCDQ96DY2 449 aa7.24□□□□□ -1.25
YBX3-210ENST00000540975 DAZAP1Q96EP5 407 aaKnown RBP7.24□□□□□ -1.25
YBX3-210ENST00000540975 ZNF668Q96K58 619 aaPredicted RBP7.24□□□□□ -1.25
YBX3-210ENST00000540975 SNX18Q96RF0 628 aa7.24□□□□□ -1.25
YBX3-210ENST00000540975 TBCBQ99426 244 aa7.24□□□□□ -1.25
YBX3-210ENST00000540975 CIPCQ9C0C6 399 aa7.24□□□□□ -1.25
YBX3-210ENST00000540975 TRIM36Q9NQ86 728 aa7.24□□□□□ -1.25
YBX3-210ENST00000540975 LPAR3Q9UBY5 353 aa7.24□□□□□ -1.25
YBX3-210ENST00000540975 POM121BA6NF01 834 aa7.23□□□□□ -1.25
YBX3-210ENST00000540975 CGB1A6NKQ9 187 aa7.23□□□□□ -1.25
YBX3-210ENST00000540975 TISP43B9A030 160 aa7.23□□□□□ -1.25
YBX3-210ENST00000540975 M0R3H8 397 aa7.23□□□□□ -1.25
YBX3-210ENST00000540975 EXOC5O00471 708 aa7.23□□□□□ -1.25
YBX3-210ENST00000540975 PMM2O15305 246 aa7.23□□□□□ -1.25
YBX3-210ENST00000540975 THAP12O43422 761 aa7.23□□□□□ -1.25
YBX3-210ENST00000540975 SPRY2O43597 315 aa7.23□□□□□ -1.25
YBX3-210ENST00000540975 CREB1P16220 341 aa7.23□□□□□ -1.25
YBX3-210ENST00000540975 PRIM2P49643 509 aa7.23□□□□□ -1.25
YBX3-210ENST00000540975 MTHFSP49914 203 aa7.23□□□□□ -1.25
YBX3-210ENST00000540975 TUBA4AP68366 448 aa7.23□□□□□ -1.25
YBX3-210ENST00000540975 SRSF4Q08170 494 aaKnown RBP7.23□□□□□ -1.25
YBX3-210ENST00000540975 GRM1Q13255 1194 aa7.23□□□□□ -1.25
YBX3-210ENST00000540975 HSP90AB2PQ58FF8 381 aa7.23□□□□□ -1.25
YBX3-210ENST00000540975 KLHDC7AQ5VTJ3 777 aa7.23□□□□□ -1.25
YBX3-210ENST00000540975 RRAGBQ5VZM2 374 aa7.23□□□□□ -1.25
YBX3-210ENST00000540975 PTCHD4Q6ZW05 846 aa7.23□□□□□ -1.25
YBX3-210ENST00000540975 CHSY1Q86X52 802 aa7.23□□□□□ -1.25
YBX3-210ENST00000540975 RNF152Q8N8N0 203 aa7.23□□□□□ -1.25
YBX3-210ENST00000540975 HIST1H2AAQ96QV6 131 aa7.23□□□□□ -1.25
YBX3-210ENST00000540975 AS3MTQ9HBK9 375 aa7.23□□□□□ -1.25
YBX3-210ENST00000540975 TFCP2L1Q9NZI6 479 aa7.23□□□□□ -1.25
YBX3-210ENST00000540975 MGAT4CQ9UBM8 478 aa7.23□□□□□ -1.25
YBX3-210ENST00000540975 DNAJB11Q9UBS4 358 aa7.23□□□□□ -1.25
YBX3-210ENST00000540975 NKX1-2Q9UD57 310 aaPredicted RBP7.23□□□□□ -1.25
YBX3-210ENST00000540975 PRRT4C9JH25 899 aa7.22□□□□□ -1.25
YBX3-210ENST00000540975 H7C1Q1 480 aa7.22□□□□□ -1.25
YBX3-210ENST00000540975 NTSR1P30989 418 aa7.22□□□□□ -1.25
YBX3-210ENST00000540975 SLC10A2Q12908 348 aaPredicted RBP7.22□□□□□ -1.25
YBX3-210ENST00000540975 MZT2AQ6P582 158 aa7.22□□□□□ -1.25
YBX3-210ENST00000540975 KIRREL2Q6UWL6 708 aa7.22□□□□□ -1.25
YBX3-210ENST00000540975 KSR2Q6VAB6 950 aa7.22□□□□□ -1.25
YBX3-210ENST00000540975 KRT28Q7Z3Y7 464 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms