RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 FAM92AA1XBS5 289 aa12.75□□□□□ -0.37
CBX3P4-202ENST00000540428 K7ELQ4 463 aaPredicted RBP12.75□□□□□ -0.37
CBX3P4-202ENST00000540428 KLF8O95600 359 aaPredicted RBP12.75□□□□□ -0.37
CBX3P4-202ENST00000540428 ADH5P11766 374 aa12.75□□□□□ -0.37
CBX3P4-202ENST00000540428 CSRP1P21291 193 aaKnown RBP12.75□□□□□ -0.37
CBX3P4-202ENST00000540428 BCKDHBP21953 392 aa12.75□□□□□ -0.37
CBX3P4-202ENST00000540428 TIE1P35590 1138 aa12.75□□□□□ -0.37
CBX3P4-202ENST00000540428 P2RY2P41231 377 aa12.75□□□□□ -0.37
CBX3P4-202ENST00000540428 DPP6P42658 865 aa12.75□□□□□ -0.37
CBX3P4-202ENST00000540428 KIR2DL1P43626 348 aaPredicted RBP12.75□□□□□ -0.37
CBX3P4-202ENST00000540428 SLC6A11P48066 632 aa12.75□□□□□ -0.37
CBX3P4-202ENST00000540428 CLDN10P78369 228 aa12.75□□□□□ -0.37
CBX3P4-202ENST00000540428 GAD2Q05329 585 aa12.75□□□□□ -0.37
CBX3P4-202ENST00000540428 BYSLQ13895 437 aaKnown RBP12.75□□□□□ -0.37
CBX3P4-202ENST00000540428 HECTD3Q5T447 861 aa12.75□□□□□ -0.37
CBX3P4-202ENST00000540428 PSAPL1Q6NUJ1 521 aa12.75□□□□□ -0.37
CBX3P4-202ENST00000540428 LPCAT2Q7L5N7 544 aa12.75□□□□□ -0.37
CBX3P4-202ENST00000540428 ALLCQ8N6M5 410 aa12.75□□□□□ -0.37
CBX3P4-202ENST00000540428 TXNDC5Q8NBS9 432 aaKnown RBP12.75□□□□□ -0.37
CBX3P4-202ENST00000540428 GOLGA5Q8TBA6 731 aa12.75□□□□□ -0.37
CBX3P4-202ENST00000540428 FBXO32Q969P5 355 aa12.75□□□□□ -0.37
CBX3P4-202ENST00000540428 TNIP3Q96KP6 325 aa12.75□□□□□ -0.37
CBX3P4-202ENST00000540428 ZFRQ96KR1 1074 aaKnown RBP12.75□□□□□ -0.37
CBX3P4-202ENST00000540428 SPACA7Q96KW9 195 aa12.75□□□□□ -0.37
CBX3P4-202ENST00000540428 DMAP1Q9NPF5 467 aaPredicted RBP12.75□□□□□ -0.37
CBX3P4-202ENST00000540428 NXF1Q9UBU9 619 aaKnown RBP12.75□□□□□ -0.37
CBX3P4-202ENST00000540428 INVSQ9Y283 1065 aa12.75□□□□□ -0.37
CBX3P4-202ENST00000540428 KIAA1549LQ6ZVL6 1849 aa12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 ANTXRLA6NF34 631 aa12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 SGK1O00141 431 aa12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 CLDN5O00501 218 aa12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 CDX4O14627 284 aaPredicted RBP12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 TNFRSF10BO14763 440 aa12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 HOXC11O43248 304 aaPredicted RBP12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 COCHO43405 550 aa12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 EXOC3O60645 756 aa12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 PHACTR2O75167 634 aa12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 ZDHHC11BP0C7U3 371 aa12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 PDIA4P13667 645 aaKnown RBP12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 CEACAM1P13688 526 aa12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 HNRNPLP14866 589 aaKnown RBP eCLIP12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 DHPSP49366 369 aaPredicted RBP12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 SLC5A3P53794 718 aa12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 IFRD2Q12894 506 aaPredicted RBP12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 LMAN2Q12907 356 aa12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 KNOP1Q1ED39 458 aaKnown RBP12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 LY6G5CQ5SRR4 150 aa12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 NUDT18Q6ZVK8 323 aa12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 TRMT11Q7Z4G4 463 aaKnown RBP12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 FAM35AQ86V20 835 aa12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 C12orf40Q86WS4 652 aa12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 ETFBKMTQ8IXQ9 262 aa12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 PHTF2Q8N3S3 785 aa12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 TMEM174Q8WUU8 243 aa12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 SMARCD1Q96GM5 515 aa12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 KCNK16Q96T55 309 aa12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 TFIP11Q9UBB9 837 aaKnown RBP12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 SH3BP1Q9Y3L3 701 aa12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 MAP1BP46821 2468 aaKnown RBP12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 PTPRDP23468 1912 aa12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 HELZP42694 1942 aaKnown RBP12.74□□□□□ -0.37
CBX3P4-202ENST00000540428 CHD8Q9HCK8 2581 aa12.73□□□□□ -0.37
CBX3P4-202ENST00000540428 SCAMP3O14828 347 aaKnown RBP12.73□□□□□ -0.37
CBX3P4-202ENST00000540428 POLR2DO15514 142 aaKnown RBP12.73□□□□□ -0.37
CBX3P4-202ENST00000540428 ADAM23O75077 832 aa12.73□□□□□ -0.37
CBX3P4-202ENST00000540428 PROS1P07225 676 aa12.73□□□□□ -0.37
CBX3P4-202ENST00000540428 HOXD12P35452 270 aa12.73□□□□□ -0.37
CBX3P4-202ENST00000540428 IRX4P78413 519 aa12.73□□□□□ -0.37
CBX3P4-202ENST00000540428 MESP2Q0VG99 397 aa12.73□□□□□ -0.37
CBX3P4-202ENST00000540428 BIRC3Q13489 604 aa12.73□□□□□ -0.37
CBX3P4-202ENST00000540428 NCOA4Q13772 614 aa12.73□□□□□ -0.37
CBX3P4-202ENST00000540428 ZNF699Q32M78 642 aa12.73□□□□□ -0.37
CBX3P4-202ENST00000540428 ZNF667Q5HYK9 610 aa12.73□□□□□ -0.37
CBX3P4-202ENST00000540428 SH3PXD2AQ5TCZ1 1133 aa12.73□□□□□ -0.37
CBX3P4-202ENST00000540428 BTBD8Q5XKL5 378 aa12.73□□□□□ -0.37
CBX3P4-202ENST00000540428 PAQR9Q6ZVX9 377 aa12.73□□□□□ -0.37
CBX3P4-202ENST00000540428 SYT12Q8IV01 421 aa12.73□□□□□ -0.37
CBX3P4-202ENST00000540428 SFTPA1Q8IWL2 248 aa12.73□□□□□ -0.37
CBX3P4-202ENST00000540428 PARD3BQ8TEW8 1205 aa12.73□□□□□ -0.37
CBX3P4-202ENST00000540428 PIGKQ92643 395 aa12.73□□□□□ -0.37
CBX3P4-202ENST00000540428 MED10Q9BTT4 135 aa12.73□□□□□ -0.37
CBX3P4-202ENST00000540428 SMYD3Q9H7B4 428 aa12.73□□□□□ -0.37
CBX3P4-202ENST00000540428 SLC39A2Q9NP94 309 aa12.73□□□□□ -0.37
CBX3P4-202ENST00000540428 SPHK2Q9NRA0 654 aa12.73□□□□□ -0.37
CBX3P4-202ENST00000540428 FAM13BQ9NYF5 915 aa12.73□□□□□ -0.37
CBX3P4-202ENST00000540428 BCCIPQ9P287 314 aaKnown RBP eCLIP12.73□□□□□ -0.37
CBX3P4-202ENST00000540428 DEC1Q9P2X7 70 aa12.73□□□□□ -0.37
CBX3P4-202ENST00000540428 CHORDC1Q9UHD1 332 aaPredicted RBP12.73□□□□□ -0.37
CBX3P4-202ENST00000540428 MYO16Q9Y6X6 1858 aa12.72□□□□□ -0.37
CBX3P4-202ENST00000540428 LRRIQ3A6PVS8 624 aaPredicted RBP12.72□□□□□ -0.37
CBX3P4-202ENST00000540428 PATE3B3GLJ2 98 aa12.72□□□□□ -0.37
CBX3P4-202ENST00000540428 C4BPAP04003 597 aaKnown RBP12.72□□□□□ -0.37
CBX3P4-202ENST00000540428 RPN1P04843 607 aaKnown RBP12.72□□□□□ -0.37
CBX3P4-202ENST00000540428 P4HA1P13674 534 aa12.72□□□□□ -0.37
CBX3P4-202ENST00000540428 CDH8P55286 799 aa12.72□□□□□ -0.37
CBX3P4-202ENST00000540428 KDSRQ06136 332 aa12.72□□□□□ -0.37
CBX3P4-202ENST00000540428 ZNF252P-AS1Q0IIN9 211 aa12.72□□□□□ -0.37
CBX3P4-202ENST00000540428 MAP7D1Q3KQU3 841 aa12.72□□□□□ -0.37
CBX3P4-202ENST00000540428 TRIM61Q5EBN2 209 aa12.72□□□□□ -0.37
CBX3P4-202ENST00000540428 EMC10Q5UCC4 262 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms