RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 CRTAC1Q9NQ79 661 aa12.41□□□□□ -0.42
CLSTN3-209ENST00000539982 RBAKQ9NYW8 714 aaPredicted RBP12.41□□□□□ -0.42
CLSTN3-209ENST00000539982 CALCOCO1Q9P1Z2 691 aa12.41□□□□□ -0.42
CLSTN3-209ENST00000539982 EXOC7Q9UPT5 735 aa12.41□□□□□ -0.42
CLSTN3-209ENST00000539982 MYO18AQ92614 2054 aaKnown RBP12.41□□□□□ -0.42
CLSTN3-209ENST00000539982 MYOFQ9NZM1 2061 aa12.41□□□□□ -0.42
CLSTN3-209ENST00000539982 IGHV1OR15-9A0A0B4J2B8 117 aa12.4□□□□□ -0.42
CLSTN3-209ENST00000539982 E2F8A0AVK6 867 aa12.4□□□□□ -0.42
CLSTN3-209ENST00000539982 TRIM66O15016 1216 aa12.4□□□□□ -0.42
CLSTN3-209ENST00000539982 ZBTB24O43167 697 aaPredicted RBP12.4□□□□□ -0.42
CLSTN3-209ENST00000539982 PPP1R37O75864 691 aa12.4□□□□□ -0.42
CLSTN3-209ENST00000539982 PSMC1P62191 440 aaKnown RBP12.4□□□□□ -0.42
CLSTN3-209ENST00000539982 CYP27A1Q02318 531 aa12.4□□□□□ -0.42
CLSTN3-209ENST00000539982 TAF10Q12962 218 aa12.4□□□□□ -0.42
CLSTN3-209ENST00000539982 MYO1EQ12965 1108 aa12.4□□□□□ -0.42
CLSTN3-209ENST00000539982 PLEKHG6Q3KR16 790 aa12.4□□□□□ -0.42
CLSTN3-209ENST00000539982 TDRD10Q5VZ19 366 aaKnown RBP12.4□□□□□ -0.42
CLSTN3-209ENST00000539982 BTBD8Q5XKL5 378 aa12.4□□□□□ -0.42
CLSTN3-209ENST00000539982 SLC41A1Q8IVJ1 513 aa12.4□□□□□ -0.42
CLSTN3-209ENST00000539982 ETFBKMTQ8IXQ9 262 aa12.4□□□□□ -0.42
CLSTN3-209ENST00000539982 KRI1Q8N9T8 703 aaKnown RBP12.4□□□□□ -0.42
CLSTN3-209ENST00000539982 TRIML1Q8N9V2 468 aa12.4□□□□□ -0.42
CLSTN3-209ENST00000539982 ZSWIM2Q8NEG5 633 aa12.4□□□□□ -0.42
CLSTN3-209ENST00000539982 HNRNPLLQ8WVV9 542 aaKnown RBP12.4□□□□□ -0.42
CLSTN3-209ENST00000539982 KBTBD7Q8WVZ9 684 aa12.4□□□□□ -0.42
CLSTN3-209ENST00000539982 LARP4BQ92615 738 aaKnown RBP12.4□□□□□ -0.42
CLSTN3-209ENST00000539982 COL26A1Q96A83 441 aa12.4□□□□□ -0.42
CLSTN3-209ENST00000539982 OTUB2Q96DC9 234 aa12.4□□□□□ -0.42
CLSTN3-209ENST00000539982 SAAL1Q96ER3 474 aa12.4□□□□□ -0.42
CLSTN3-209ENST00000539982 ZNF419Q96HQ0 510 aaPredicted RBP12.4□□□□□ -0.42
CLSTN3-209ENST00000539982 C8orf48Q96LL4 319 aa12.4□□□□□ -0.42
CLSTN3-209ENST00000539982 FAM124BQ9H5Z6 455 aaPredicted RBP12.4□□□□□ -0.42
CLSTN3-209ENST00000539982 DEC1Q9P2X7 70 aa12.4□□□□□ -0.42
CLSTN3-209ENST00000539982 SIX4Q9UIU6 781 aa12.4□□□□□ -0.42
CLSTN3-209ENST00000539982 APOBEC2Q9Y235 224 aaKnown RBP12.4□□□□□ -0.42
CLSTN3-209ENST00000539982 STARD13Q9Y3M8 1113 aa12.4□□□□□ -0.42
CLSTN3-209ENST00000539982 R3HCC1Q9Y3T6 440 aaKnown RBP12.4□□□□□ -0.42
CLSTN3-209ENST00000539982 LOC400499M0QZD8 3231 aa12.39□□□□□ -0.43
CLSTN3-209ENST00000539982 A0A1W2PQF6 199 aa12.39□□□□□ -0.43
CLSTN3-209ENST00000539982 F8VP50 259 aa12.39□□□□□ -0.43
CLSTN3-209ENST00000539982 TULP3O75386 442 aa12.39□□□□□ -0.43
CLSTN3-209ENST00000539982 PDGFRBP09619 1106 aa12.39□□□□□ -0.43
CLSTN3-209ENST00000539982 MBL2P11226 248 aaPredicted RBP12.39□□□□□ -0.43
CLSTN3-209ENST00000539982 HOXB2P14652 356 aa12.39□□□□□ -0.43
CLSTN3-209ENST00000539982 GARTP22102 1010 aa12.39□□□□□ -0.43
CLSTN3-209ENST00000539982 NTSR1P30989 418 aa12.39□□□□□ -0.43
CLSTN3-209ENST00000539982 KCNA1Q09470 495 aa12.39□□□□□ -0.43
CLSTN3-209ENST00000539982 GLRX5Q86SX6 157 aa12.39□□□□□ -0.43
CLSTN3-209ENST00000539982 SFR1Q86XK3 245 aa12.39□□□□□ -0.43
CLSTN3-209ENST00000539982 NAXDQ8IW45 347 aa12.39□□□□□ -0.43
CLSTN3-209ENST00000539982 NAT16Q8N8M0 369 aa12.39□□□□□ -0.43
CLSTN3-209ENST00000539982 RASSF8Q8NHQ8 419 aa12.39□□□□□ -0.43
CLSTN3-209ENST00000539982 MYCBPAPQ8TBZ2 947 aa12.39□□□□□ -0.43
CLSTN3-209ENST00000539982 PCED1BQ96HM7 432 aa12.39□□□□□ -0.43
CLSTN3-209ENST00000539982 HPDLQ96IR7 371 aa12.39□□□□□ -0.43
CLSTN3-209ENST00000539982 FAM84AQ96KN4 292 aa12.39□□□□□ -0.43
CLSTN3-209ENST00000539982 HSPA12BQ96MM6 686 aa12.39□□□□□ -0.43
CLSTN3-209ENST00000539982 SLITRK1Q96PX8 696 aa12.39□□□□□ -0.43
CLSTN3-209ENST00000539982 ACCSQ96QU6 501 aa12.39□□□□□ -0.43
CLSTN3-209ENST00000539982 PDE11AQ9HCR9 933 aa12.39□□□□□ -0.43
CLSTN3-209ENST00000539982 SCUBE2Q9NQ36 999 aa12.39□□□□□ -0.43
CLSTN3-209ENST00000539982 KIAA1522Q9P206 1035 aaPredicted RBP12.39□□□□□ -0.43
CLSTN3-209ENST00000539982 SUSD2Q9UGT4 822 aa12.39□□□□□ -0.43
CLSTN3-209ENST00000539982 HCN2Q9UL51 889 aa12.39□□□□□ -0.43
CLSTN3-209ENST00000539982 PLXNB3Q9ULL4 1909 aa12.39□□□□□ -0.43
CLSTN3-209ENST00000539982 GOLGA8IPA6NC78 632 aa12.38□□□□□ -0.43
CLSTN3-209ENST00000539982 GOLGA8JA6NMD2 632 aa12.38□□□□□ -0.43
CLSTN3-209ENST00000539982 HOXC11O43248 304 aaPredicted RBP12.38□□□□□ -0.43
CLSTN3-209ENST00000539982 TMEM191BP0C7N4 346 aa12.38□□□□□ -0.43
CLSTN3-209ENST00000539982 GNSP15586 552 aa12.38□□□□□ -0.43
CLSTN3-209ENST00000539982 WARSP23381 471 aaKnown RBP12.38□□□□□ -0.43
CLSTN3-209ENST00000539982 LONP1P36776 959 aaKnown RBP12.38□□□□□ -0.43
CLSTN3-209ENST00000539982 WASP42768 502 aa12.38□□□□□ -0.43
CLSTN3-209ENST00000539982 C10orf76Q5T2E6 689 aa12.38□□□□□ -0.43
CLSTN3-209ENST00000539982 SYCP2LQ5T4T6 812 aa12.38□□□□□ -0.43
CLSTN3-209ENST00000539982 L1TD1Q5T7N2 865 aaKnown RBP12.38□□□□□ -0.43
CLSTN3-209ENST00000539982 SDE2Q6IQ49 451 aa12.38□□□□□ -0.43
CLSTN3-209ENST00000539982 TOGARAM2Q6ZUX3 1019 aa12.38□□□□□ -0.43
CLSTN3-209ENST00000539982 DYMQ7RTS9 669 aa12.38□□□□□ -0.43
CLSTN3-209ENST00000539982 SLCO6A1Q86UG4 719 aa12.38□□□□□ -0.43
CLSTN3-209ENST00000539982 RGL4Q8IZJ4 473 aa12.38□□□□□ -0.43
CLSTN3-209ENST00000539982 TERB1Q8NA31 727 aa12.38□□□□□ -0.43
CLSTN3-209ENST00000539982 MDM1Q8TC05 714 aa12.38□□□□□ -0.43
CLSTN3-209ENST00000539982 FOXJ1Q92949 421 aa12.38□□□□□ -0.43
CLSTN3-209ENST00000539982 BBC3Q96PG8 261 aaPredicted RBP12.38□□□□□ -0.43
CLSTN3-209ENST00000539982 DUSP9Q99956 384 aaKnown RBP12.38□□□□□ -0.43
CLSTN3-209ENST00000539982 ZDHHC5Q9C0B5 715 aa12.38□□□□□ -0.43
CLSTN3-209ENST00000539982 MTMR12Q9C0I1 747 aa12.38□□□□□ -0.43
CLSTN3-209ENST00000539982 MRPL44Q9H9J2 332 aaKnown RBP12.38□□□□□ -0.43
CLSTN3-209ENST00000539982 CD248Q9HCU0 757 aa12.38□□□□□ -0.43
CLSTN3-209ENST00000539982 SEL1LQ9UBV2 794 aa12.38□□□□□ -0.43
CLSTN3-209ENST00000539982 CYP8B1Q9UNU6 501 aa12.38□□□□□ -0.43
CLSTN3-209ENST00000539982 RAXQ9Y2V3 346 aa12.38□□□□□ -0.43
CLSTN3-209ENST00000539982 KIF3AQ9Y496 699 aa12.38□□□□□ -0.43
CLSTN3-209ENST00000539982 SMG1Q96Q15 3661 aaKnown RBP12.38□□□□□ -0.43
CLSTN3-209ENST00000539982 ACACAQ13085 2346 aa12.37□□□□□ -0.43
CLSTN3-209ENST00000539982 EIF4E1BA6NMX2 242 aaKnown RBP12.37□□□□□ -0.43
CLSTN3-209ENST00000539982 CBFA2T3O75081 653 aa12.37□□□□□ -0.43
CLSTN3-209ENST00000539982 NDUFS2O75306 463 aa12.37□□□□□ -0.43
CLSTN3-209ENST00000539982 NDUFV2P19404 249 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms