RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 PPP3CCP48454 512 aa9.84□□□□□ -0.83
USP28-205ENST00000537706 GPR15P49685 360 aa9.84□□□□□ -0.83
USP28-205ENST00000537706 CDR1P51861 262 aa9.84□□□□□ -0.83
USP28-205ENST00000537706 SLC7A9P82251 487 aa9.84□□□□□ -0.83
USP28-205ENST00000537706 IL9RQ01113 521 aa9.84□□□□□ -0.83
USP28-205ENST00000537706 DNAJC3Q13217 504 aa9.84□□□□□ -0.83
USP28-205ENST00000537706 LY6G5CQ5SRR4 150 aa9.84□□□□□ -0.83
USP28-205ENST00000537706 SDHAF4Q5VUM1 108 aa9.84□□□□□ -0.83
USP28-205ENST00000537706 EGFLAMQ63HQ2 1017 aa9.84□□□□□ -0.83
USP28-205ENST00000537706 KDM7AQ6ZMT4 941 aa9.84□□□□□ -0.83
USP28-205ENST00000537706 NAT16Q8N8M0 369 aa9.84□□□□□ -0.83
USP28-205ENST00000537706 LRRC15Q8TF66 581 aa9.84□□□□□ -0.83
USP28-205ENST00000537706 LEO1Q8WVC0 666 aaPredicted RBP9.84□□□□□ -0.83
USP28-205ENST00000537706 PRCCQ92733 491 aaPredicted RBP9.84□□□□□ -0.83
USP28-205ENST00000537706 XPO6Q96QU8 1125 aaKnown RBP9.84□□□□□ -0.83
USP28-205ENST00000537706 ANO2Q9NQ90 1003 aa9.84□□□□□ -0.83
USP28-205ENST00000537706 STARD5Q9NSY2 213 aa9.84□□□□□ -0.83
USP28-205ENST00000537706 HELZP42694 1942 aaKnown RBP9.83□□□□□ -0.84
USP28-205ENST00000537706 CEP192Q8TEP8 1941 aa9.83□□□□□ -0.84
USP28-205ENST00000537706 HOXC11O43248 304 aaPredicted RBP9.83□□□□□ -0.84
USP28-205ENST00000537706 TULP3O75386 442 aa9.83□□□□□ -0.84
USP28-205ENST00000537706 TOM1L1O75674 476 aa9.83□□□□□ -0.84
USP28-205ENST00000537706 CXCL8P10145 99 aa9.83□□□□□ -0.84
USP28-205ENST00000537706 PROZP22891 400 aa9.83□□□□□ -0.84
USP28-205ENST00000537706 ZNF132P52740 706 aa9.83□□□□□ -0.84
USP28-205ENST00000537706 MYL7Q01449 175 aa9.83□□□□□ -0.84
USP28-205ENST00000537706 SPAG1Q07617 926 aa9.83□□□□□ -0.84
USP28-205ENST00000537706 MESP2Q0VG99 397 aa9.83□□□□□ -0.84
USP28-205ENST00000537706 DDR2Q16832 855 aa9.83□□□□□ -0.84
USP28-205ENST00000537706 ANO4Q32M45 955 aa9.83□□□□□ -0.84
USP28-205ENST00000537706 CPLX2Q6PUV4 134 aaKnown RBP9.83□□□□□ -0.84
USP28-205ENST00000537706 PIK3AP1Q6ZUJ8 805 aa9.83□□□□□ -0.84
USP28-205ENST00000537706 LRRTM3Q86VH5 581 aa9.83□□□□□ -0.84
USP28-205ENST00000537706 CD302Q8IX05 232 aa9.83□□□□□ -0.84
USP28-205ENST00000537706 PHTF2Q8N3S3 785 aa9.83□□□□□ -0.84
USP28-205ENST00000537706 FAM26EQ8N5C1 309 aa9.83□□□□□ -0.84
USP28-205ENST00000537706 DCBLD1Q8N8Z6 715 aa9.83□□□□□ -0.84
USP28-205ENST00000537706 ERLEC1Q96DZ1 483 aa9.83□□□□□ -0.84
USP28-205ENST00000537706 SIPA1Q96FS4 1042 aa9.83□□□□□ -0.84
USP28-205ENST00000537706 PYM1Q9BRP8 204 aaKnown RBP9.83□□□□□ -0.84
USP28-205ENST00000537706 KMT5AQ9NQR1 393 aa9.83□□□□□ -0.84
USP28-205ENST00000537706 CFAP97Q9P2B7 532 aa9.83□□□□□ -0.84
USP28-205ENST00000537706 ORC3Q9UBD5 711 aaPredicted RBP9.83□□□□□ -0.84
USP28-205ENST00000537706 KCNG1Q9UIX4 513 aa9.83□□□□□ -0.84
USP28-205ENST00000537706 MAN2B2Q9Y2E5 1009 aa9.83□□□□□ -0.84
USP28-205ENST00000537706 RAD54BQ9Y620 910 aa9.83□□□□□ -0.84
USP28-205ENST00000537706 CPQQ9Y646 472 aa9.83□□□□□ -0.84
USP28-205ENST00000537706 LAMA1P25391 3075 aa9.83□□□□□ -0.84
USP28-205ENST00000537706 A0A1B0GTQ1 180 aa9.82□□□□□ -0.84
USP28-205ENST00000537706 CPLX1O14810 134 aa9.82□□□□□ -0.84
USP28-205ENST00000537706 CLDN3O15551 220 aa9.82□□□□□ -0.84
USP28-205ENST00000537706 SYNCRIPO60506 623 aaKnown RBP9.82□□□□□ -0.84
USP28-205ENST00000537706 MT-CO3P00414 261 aa9.82□□□□□ -0.84
USP28-205ENST00000537706 FOSBP53539 338 aa9.82□□□□□ -0.84
USP28-205ENST00000537706 GABREP78334 506 aa9.82□□□□□ -0.84
USP28-205ENST00000537706 ASIC1P78348 528 aa9.82□□□□□ -0.84
USP28-205ENST00000537706 SPATA2LQ8IUW3 424 aaPredicted RBP9.82□□□□□ -0.84
USP28-205ENST00000537706 SCN4BQ8IWT1 228 aa9.82□□□□□ -0.84
USP28-205ENST00000537706 NSUN7Q8NE18 718 aaKnown RBP9.82□□□□□ -0.84
USP28-205ENST00000537706 STKLD1Q8NE28 680 aa9.82□□□□□ -0.84
USP28-205ENST00000537706 RFFLQ8WZ73 363 aa9.82□□□□□ -0.84
USP28-205ENST00000537706 BRF1Q92994 677 aa9.82□□□□□ -0.84
USP28-205ENST00000537706 SLC6A17Q9H1V8 727 aa9.82□□□□□ -0.84
USP28-205ENST00000537706 TM9SF3Q9HD45 589 aa9.82□□□□□ -0.84
USP28-205ENST00000537706 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.82□□□□□ -0.84
USP28-205ENST00000537706 SH3BP1Q9Y3L3 701 aa9.82□□□□□ -0.84
USP28-205ENST00000537706 ZNF638Q14966 1978 aaKnown RBP9.82□□□□□ -0.84
USP28-205ENST00000537706 NPC1O15118 1278 aa9.82□□□□□ -0.84
USP28-205ENST00000537706 KALRNO60229 2985 aa9.82□□□□□ -0.84
USP28-205ENST00000537706 DXOO77932 396 aaKnown RBP9.82□□□□□ -0.84
USP28-205ENST00000537706 MBL2P11226 248 aaPredicted RBP9.82□□□□□ -0.84
USP28-205ENST00000537706 TXKP42681 527 aa9.82□□□□□ -0.84
USP28-205ENST00000537706 CTSKP43235 329 aa9.82□□□□□ -0.84
USP28-205ENST00000537706 TAF6P49848 677 aa9.82□□□□□ -0.84
USP28-205ENST00000537706 PEX3P56589 373 aa9.82□□□□□ -0.84
USP28-205ENST00000537706 TLE1Q04724 770 aa9.82□□□□□ -0.84
USP28-205ENST00000537706 ZBTB6Q15916 424 aa9.82□□□□□ -0.84
USP28-205ENST00000537706 NTRK3Q16288 839 aa9.82□□□□□ -0.84
USP28-205ENST00000537706 SPATA1Q5VX52 437 aa9.82□□□□□ -0.84
USP28-205ENST00000537706 Q6ZUG5 572 aa9.82□□□□□ -0.84
USP28-205ENST00000537706 VCPIP1Q96JH7 1222 aa9.82□□□□□ -0.84
USP28-205ENST00000537706 DEPDC7Q96QD5 511 aa9.82□□□□□ -0.84
USP28-205ENST00000537706 ACE2Q9BYF1 805 aaPredicted RBP9.82□□□□□ -0.84
USP28-205ENST00000537706 CD93Q9NPY3 652 aa9.82□□□□□ -0.84
USP28-205ENST00000537706 DNAJC17Q9NVM6 304 aaKnown RBP9.82□□□□□ -0.84
USP28-205ENST00000537706 SMPD4Q9NXE4 827 aa9.82□□□□□ -0.84
USP28-205ENST00000537706 TTC26A0AVF1 554 aa9.81□□□□□ -0.84
USP28-205ENST00000537706 KCNK3O14649 394 aa9.81□□□□□ -0.84
USP28-205ENST00000537706 PPFIA2O75334 1257 aa9.81□□□□□ -0.84
USP28-205ENST00000537706 CKMT2P17540 419 aa9.81□□□□□ -0.84
USP28-205ENST00000537706 ANXA13P27216 316 aa9.81□□□□□ -0.84
USP28-205ENST00000537706 RBMS1P29558 406 aaKnown RBP9.81□□□□□ -0.84
USP28-205ENST00000537706 LSSP48449 732 aa9.81□□□□□ -0.84
USP28-205ENST00000537706 TPMTP51580 245 aa9.81□□□□□ -0.84
USP28-205ENST00000537706 NFKB2Q00653 900 aa9.81□□□□□ -0.84
USP28-205ENST00000537706 SAFBQ15424 915 aaKnown RBP eCLIP9.81□□□□□ -0.84
USP28-205ENST00000537706 SEZ6Q53EL9 994 aa9.81□□□□□ -0.84
USP28-205ENST00000537706 C9orf57Q5W0N0 161 aa9.81□□□□□ -0.84
USP28-205ENST00000537706 WSCD1Q658N2 575 aa9.81□□□□□ -0.84
USP28-205ENST00000537706 GATAD2AQ86YP4 633 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms