RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 ADORA2AP29274 412 aa3.06□□□□□ -1.92
SKA3-207ENST00000536239 LRPAP1P30533 357 aa3.06□□□□□ -1.92
SKA3-207ENST00000536239 IARSP41252 1262 aaKnown RBP3.06□□□□□ -1.92
SKA3-207ENST00000536239 MASP1P48740 699 aa3.06□□□□□ -1.92
SKA3-207ENST00000536239 IRX6P78412 446 aaPredicted RBP3.06□□□□□ -1.92
SKA3-207ENST00000536239 SLC20A2Q08357 652 aa3.06□□□□□ -1.92
SKA3-207ENST00000536239 DMTNQ08495 405 aa3.06□□□□□ -1.92
SKA3-207ENST00000536239 MYO1EQ12965 1108 aa3.06□□□□□ -1.92
SKA3-207ENST00000536239 NOGQ13253 232 aa3.06□□□□□ -1.92
SKA3-207ENST00000536239 LARS2Q15031 903 aaKnown RBP3.06□□□□□ -1.92
SKA3-207ENST00000536239 INPP5JQ15735 1006 aaPredicted RBP3.06□□□□□ -1.92
SKA3-207ENST00000536239 UAP1L1Q3KQV9 507 aa3.06□□□□□ -1.92
SKA3-207ENST00000536239 SLC9C1Q4G0N8 1177 aa3.06□□□□□ -1.92
SKA3-207ENST00000536239 ZNF324BQ6AW86 544 aaPredicted RBP3.06□□□□□ -1.92
SKA3-207ENST00000536239 CAPRIN2Q6IMN6 1127 aaKnown RBP3.06□□□□□ -1.92
SKA3-207ENST00000536239 TMEM65Q6PI78 240 aa3.06□□□□□ -1.92
SKA3-207ENST00000536239 RANBP10Q6VN20 620 aa3.06□□□□□ -1.92
SKA3-207ENST00000536239 HEATR3Q7Z4Q2 680 aa3.06□□□□□ -1.92
SKA3-207ENST00000536239 PHLDB1Q86UU1 1377 aa3.06□□□□□ -1.92
SKA3-207ENST00000536239 PPP1R3BQ86XI6 285 aa3.06□□□□□ -1.92
SKA3-207ENST00000536239 IZUMO1Q8IYV9 350 aa3.06□□□□□ -1.92
SKA3-207ENST00000536239 ABRAQ8N0Z2 381 aa3.06□□□□□ -1.92
SKA3-207ENST00000536239 RSPRY1Q96DX4 576 aa3.06□□□□□ -1.92
SKA3-207ENST00000536239 GTPBP4Q9BZE4 634 aaKnown RBP3.06□□□□□ -1.92
SKA3-207ENST00000536239 TMEM8AQ9HCN3 771 aa3.06□□□□□ -1.92
SKA3-207ENST00000536239 SEMA4BQ9NPR2 832 aaPredicted RBP3.06□□□□□ -1.92
SKA3-207ENST00000536239 GJB4Q9NTQ9 266 aa3.06□□□□□ -1.92
SKA3-207ENST00000536239 SHOC2Q9UQ13 582 aa3.06□□□□□ -1.92
SKA3-207ENST00000536239 SERINC4A6NH21 518 aa3.05□□□□□ -1.92
SKA3-207ENST00000536239 CCER2I3L3R5 266 aa3.05□□□□□ -1.92
SKA3-207ENST00000536239 CES2O00748 559 aa3.05□□□□□ -1.92
SKA3-207ENST00000536239 SLC16A6O15403 523 aa3.05□□□□□ -1.92
SKA3-207ENST00000536239 XPOTO43592 962 aaKnown RBP3.05□□□□□ -1.92
SKA3-207ENST00000536239 LETM1O95202 739 aaPredicted RBP3.05□□□□□ -1.92
SKA3-207ENST00000536239 APEHP13798 732 aaKnown RBP3.05□□□□□ -1.92
SKA3-207ENST00000536239 VIPR2P41587 438 aa3.05□□□□□ -1.92
SKA3-207ENST00000536239 HK3P52790 923 aa3.05□□□□□ -1.92
SKA3-207ENST00000536239 COPB1P53618 953 aaKnown RBP3.05□□□□□ -1.92
SKA3-207ENST00000536239 HILS1P60008 231 aa3.05□□□□□ -1.92
SKA3-207ENST00000536239 EXOSC9Q06265 439 aaKnown RBP3.05□□□□□ -1.92
SKA3-207ENST00000536239 LMAN2Q12907 356 aa3.05□□□□□ -1.92
SKA3-207ENST00000536239 ZNF750Q32MQ0 723 aa3.05□□□□□ -1.92
SKA3-207ENST00000536239 TMEM63BQ5T3F8 832 aa3.05□□□□□ -1.92
SKA3-207ENST00000536239 CUZD1Q86UP6 607 aa3.05□□□□□ -1.92
SKA3-207ENST00000536239 CNTD1Q8N815 330 aa3.05□□□□□ -1.92
SKA3-207ENST00000536239 TMEM255BQ8WV15 326 aa3.05□□□□□ -1.92
SKA3-207ENST00000536239 FRAT1Q92837 279 aaPredicted RBP3.05□□□□□ -1.92
SKA3-207ENST00000536239 SLC25A28Q96A46 364 aa3.05□□□□□ -1.92
SKA3-207ENST00000536239 TEKT5Q96M29 485 aa3.05□□□□□ -1.92
SKA3-207ENST00000536239 NLRP4Q96MN2 994 aa3.05□□□□□ -1.92
SKA3-207ENST00000536239 CXorf36Q9H7Y0 433 aa3.05□□□□□ -1.92
SKA3-207ENST00000536239 YY1AP1Q9H869 796 aa3.05□□□□□ -1.92
SKA3-207ENST00000536239 RRAGDQ9NQL2 400 aaPredicted RBP3.05□□□□□ -1.92
SKA3-207ENST00000536239 ERRFI1Q9UJM3 462 aaPredicted RBP3.05□□□□□ -1.92
SKA3-207ENST00000536239 PLEKHM1Q9Y4G2 1056 aa3.05□□□□□ -1.92
SKA3-207ENST00000536239 EVPLQ92817 2033 aa3.05□□□□□ -1.92
SKA3-207ENST00000536239 NTN3O00634 580 aaPredicted RBP3.04□□□□□ -1.92
SKA3-207ENST00000536239 PMPCBO75439 489 aa3.04□□□□□ -1.92
SKA3-207ENST00000536239 UNC5CO95185 931 aa3.04□□□□□ -1.92
SKA3-207ENST00000536239 MT-CO1P00395 513 aa3.04□□□□□ -1.92
SKA3-207ENST00000536239 CDC25AP30304 524 aa3.04□□□□□ -1.92
SKA3-207ENST00000536239 GKP32189 559 aa3.04□□□□□ -1.92
SKA3-207ENST00000536239 SUMO2P61956 95 aaKnown RBP3.04□□□□□ -1.92
SKA3-207ENST00000536239 HSF1Q00613 529 aa3.04□□□□□ -1.92
SKA3-207ENST00000536239 SATB1Q01826 763 aa3.04□□□□□ -1.92
SKA3-207ENST00000536239 STIM1Q13586 685 aa3.04□□□□□ -1.92
SKA3-207ENST00000536239 MANEAQ5SRI9 462 aa3.04□□□□□ -1.92
SKA3-207ENST00000536239 THEMIS2Q5TEJ8 643 aa3.04□□□□□ -1.92
SKA3-207ENST00000536239 EMC10Q5UCC4 262 aa3.04□□□□□ -1.92
SKA3-207ENST00000536239 ZNF280BQ86YH2 543 aa3.04□□□□□ -1.92
SKA3-207ENST00000536239 LINC01465Q8N7H1 131 aa3.04□□□□□ -1.92
SKA3-207ENST00000536239 PCSK9Q8NBP7 692 aaKnown RBP3.04□□□□□ -1.92
SKA3-207ENST00000536239 WIPF2Q8TF74 440 aaPredicted RBP3.04□□□□□ -1.92
SKA3-207ENST00000536239 PSMD1Q99460 953 aa3.04□□□□□ -1.92
SKA3-207ENST00000536239 SLKQ9H2G2 1235 aaPredicted RBP3.04□□□□□ -1.92
SKA3-207ENST00000536239 MAFFQ9ULX9 164 aa3.04□□□□□ -1.92
SKA3-207ENST00000536239 PCDHA1Q9Y5I3 950 aa3.04□□□□□ -1.92
SKA3-207ENST00000536239 SNX14Q9Y5W7 946 aa3.04□□□□□ -1.92
SKA3-207ENST00000536239 FOXN3O00409 490 aaPredicted RBP3.03□□□□□ -1.92
SKA3-207ENST00000536239 GRPP07492 148 aa3.03□□□□□ -1.92
SKA3-207ENST00000536239 TYRP14679 529 aa3.03□□□□□ -1.92
SKA3-207ENST00000536239 ATF7P17544 494 aaPredicted RBP3.03□□□□□ -1.92
SKA3-207ENST00000536239 HDCP19113 662 aa3.03□□□□□ -1.92
SKA3-207ENST00000536239 CPA2P48052 419 aa3.03□□□□□ -1.92
SKA3-207ENST00000536239 ADKP55263 362 aaKnown RBP3.03□□□□□ -1.92
SKA3-207ENST00000536239 B4GALNT1Q00973 533 aa3.03□□□□□ -1.92
SKA3-207ENST00000536239 DNTTIP2Q5QJE6 756 aaKnown RBP3.03□□□□□ -1.92
SKA3-207ENST00000536239 DCDC5Q6ZRR9 648 aa3.03□□□□□ -1.92
SKA3-207ENST00000536239 PTCHD4Q6ZW05 846 aa3.03□□□□□ -1.92
SKA3-207ENST00000536239 ATL2Q8NHH9 583 aa3.03□□□□□ -1.92
SKA3-207ENST00000536239 WFIKKN2Q8TEU8 576 aa3.03□□□□□ -1.92
SKA3-207ENST00000536239 ASB5Q8WWX0 329 aa3.03□□□□□ -1.92
SKA3-207ENST00000536239 PUS7LQ9H0K6 701 aaKnown RBP3.03□□□□□ -1.92
SKA3-207ENST00000536239 GAR1Q9NY12 217 aaKnown RBP3.03□□□□□ -1.92
SKA3-207ENST00000536239 XPR1Q9UBH6 696 aa3.03□□□□□ -1.92
SKA3-207ENST00000536239 LPAR3Q9UBY5 353 aa3.03□□□□□ -1.92
SKA3-207ENST00000536239 PSMD9O00233 223 aa3.02□□□□□ -1.93
SKA3-207ENST00000536239 ACOT8O14734 319 aa3.02□□□□□ -1.93
SKA3-207ENST00000536239 TCERG1O14776 1098 aaKnown RBP3.02□□□□□ -1.93
SKA3-207ENST00000536239 IGSF3O75054 1194 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms