RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 SUGP1Q8IWZ8 645 aaKnown RBP15.87■□□□□ 0.13
CPSF1-208ENST00000532560 AOPEPQ8N6M6 819 aa15.87■□□□□ 0.13
CPSF1-208ENST00000532560 ARL14EPQ8N8R7 260 aaPredicted RBP15.87■□□□□ 0.13
CPSF1-208ENST00000532560 TFAP2BQ92481 460 aa15.87■□□□□ 0.13
CPSF1-208ENST00000532560 SHDQ96IW2 340 aa15.87■□□□□ 0.13
CPSF1-208ENST00000532560 FUCA2Q9BTY2 467 aa15.87■□□□□ 0.13
CPSF1-208ENST00000532560 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.87■□□□□ 0.13
CPSF1-208ENST00000532560 USP3Q9Y6I4 520 aa15.87■□□□□ 0.13
CPSF1-208ENST00000532560 PES1O00541 588 aaKnown RBP15.86■□□□□ 0.13
CPSF1-208ENST00000532560 CYP26A1O43174 497 aa15.86■□□□□ 0.13
CPSF1-208ENST00000532560 TPM2P07951 284 aa15.86■□□□□ 0.13
CPSF1-208ENST00000532560 KRT5P13647 590 aa15.86■□□□□ 0.13
CPSF1-208ENST00000532560 RFX1P22670 979 aa15.86■□□□□ 0.13
CPSF1-208ENST00000532560 PLA2G4AP47712 749 aa15.86■□□□□ 0.13
CPSF1-208ENST00000532560 STARD6P59095 220 aa15.86■□□□□ 0.13
CPSF1-208ENST00000532560 ZNF77Q15935 545 aa15.86■□□□□ 0.13
CPSF1-208ENST00000532560 PKDCCQ504Y2 493 aa15.86■□□□□ 0.13
CPSF1-208ENST00000532560 SLC44A4Q53GD3 710 aa15.86■□□□□ 0.13
CPSF1-208ENST00000532560 RAB41Q5JT25 222 aa15.86■□□□□ 0.13
CPSF1-208ENST00000532560 DPY19L2P1Q6NXN4 242 aa15.86■□□□□ 0.13
CPSF1-208ENST00000532560 CCDC186Q7Z3E2 898 aa15.86■□□□□ 0.13
CPSF1-208ENST00000532560 PIGZQ86VD9 579 aa15.86■□□□□ 0.13
CPSF1-208ENST00000532560 ANKRD20A12PQ8NF67 263 aa15.86■□□□□ 0.13
CPSF1-208ENST00000532560 RIN3Q8TB24 985 aa15.86■□□□□ 0.13
CPSF1-208ENST00000532560 SHC3Q92529 594 aa15.86■□□□□ 0.13
CPSF1-208ENST00000532560 CYP2S1Q96SQ9 504 aa15.86■□□□□ 0.13
CPSF1-208ENST00000532560 ZSWIM1Q9BR11 485 aa15.86■□□□□ 0.13
CPSF1-208ENST00000532560 DDX23Q9BUQ8 820 aaKnown RBP15.86■□□□□ 0.13
CPSF1-208ENST00000532560 HSD3B7Q9H2F3 369 aa15.86■□□□□ 0.13
CPSF1-208ENST00000532560 TBC1D17Q9HA65 648 aa15.86■□□□□ 0.13
CPSF1-208ENST00000532560 GRPEL1Q9HAV7 217 aa15.86■□□□□ 0.13
CPSF1-208ENST00000532560 TLR8Q9NR97 1041 aaKnown RBP15.86■□□□□ 0.13
CPSF1-208ENST00000532560 THG1LQ9NWX6 298 aaKnown RBP15.86■□□□□ 0.13
CPSF1-208ENST00000532560 KMT2EQ8IZD2 1858 aa15.86■□□□□ 0.13
CPSF1-208ENST00000532560 TICRRQ7Z2Z1 1910 aa15.86■□□□□ 0.13
CPSF1-208ENST00000532560 SYCE3A1L190 88 aa15.85■□□□□ 0.13
CPSF1-208ENST00000532560 ABL1P00519 1130 aa15.85■□□□□ 0.13
CPSF1-208ENST00000532560 BRD2P25440 801 aaKnown RBP15.85■□□□□ 0.13
CPSF1-208ENST00000532560 CLCN5P51795 746 aa15.85■□□□□ 0.13
CPSF1-208ENST00000532560 PDE4CQ08493 712 aa15.85■□□□□ 0.13
CPSF1-208ENST00000532560 KCNMA1Q12791 1236 aa15.85■□□□□ 0.13
CPSF1-208ENST00000532560 CNGA2Q16280 664 aa15.85■□□□□ 0.13
CPSF1-208ENST00000532560 MEA1Q16626 185 aa15.85■□□□□ 0.13
CPSF1-208ENST00000532560 HECTD3Q5T447 861 aa15.85■□□□□ 0.13
CPSF1-208ENST00000532560 IER5LQ5T953 404 aa15.85■□□□□ 0.13
CPSF1-208ENST00000532560 ASTLQ6HA08 431 aaPredicted RBP15.85■□□□□ 0.13
CPSF1-208ENST00000532560 KIAA1958Q8N8K9 716 aa15.85■□□□□ 0.13
CPSF1-208ENST00000532560 SH3RF2Q8TEC5 729 aa15.85■□□□□ 0.13
CPSF1-208ENST00000532560 RNF38Q9H0F5 515 aa15.85■□□□□ 0.13
CPSF1-208ENST00000532560 HEBP1Q9NRV9 189 aa15.85■□□□□ 0.13
CPSF1-208ENST00000532560 LIMA1Q9UHB6 759 aaKnown RBP15.85■□□□□ 0.13
CPSF1-208ENST00000532560 CHORDC1Q9UHD1 332 aaPredicted RBP15.85■□□□□ 0.13
CPSF1-208ENST00000532560 AJAP1Q9UKB5 411 aaPredicted RBP15.85■□□□□ 0.13
CPSF1-208ENST00000532560 ZNF318Q5VUA4 2279 aa15.85■□□□□ 0.13
CPSF1-208ENST00000532560 ZDBF2Q9HCK1 2354 aa15.84■□□□□ 0.13
CPSF1-208ENST00000532560 BECN2A8MW95 431 aa15.84■□□□□ 0.13
CPSF1-208ENST00000532560 M0QYV0 167 aa15.84■□□□□ 0.13
CPSF1-208ENST00000532560 COCHO43405 550 aa15.84■□□□□ 0.13
CPSF1-208ENST00000532560 PSEN1P49768 467 aa15.84■□□□□ 0.13
CPSF1-208ENST00000532560 COPB1P53618 953 aaKnown RBP15.84■□□□□ 0.13
CPSF1-208ENST00000532560 MLLT6P55198 1093 aaPredicted RBP15.84■□□□□ 0.13
CPSF1-208ENST00000532560 MTF1Q14872 753 aa15.84■□□□□ 0.13
CPSF1-208ENST00000532560 ARHGAP44Q17R89 818 aa15.84■□□□□ 0.13
CPSF1-208ENST00000532560 KLHDC7AQ5VTJ3 777 aa15.84■□□□□ 0.13
CPSF1-208ENST00000532560 TPRG1Q6ZUI0 275 aa15.84■□□□□ 0.13
CPSF1-208ENST00000532560 DHX40Q8IX18 779 aaKnown RBP15.84■□□□□ 0.13
CPSF1-208ENST00000532560 FLCNQ8NFG4 579 aa15.84■□□□□ 0.13
CPSF1-208ENST00000532560 CSGALNACT1Q8TDX6 532 aa15.84■□□□□ 0.13
CPSF1-208ENST00000532560 KCTD13Q8WZ19 329 aa15.84■□□□□ 0.13
CPSF1-208ENST00000532560 MSANTD3Q96H12 275 aa15.84■□□□□ 0.13
CPSF1-208ENST00000532560 ZFYVE19Q96K21 471 aa15.84■□□□□ 0.13
CPSF1-208ENST00000532560 FAM83CQ9BQN1 747 aa15.84■□□□□ 0.13
CPSF1-208ENST00000532560 VPS16Q9H269 839 aa15.84■□□□□ 0.13
CPSF1-208ENST00000532560 CCSER2Q9H7U1 834 aa15.84■□□□□ 0.13
CPSF1-208ENST00000532560 PLCB1Q9NQ66 1216 aa15.84■□□□□ 0.13
CPSF1-208ENST00000532560 CYLDQ9NQC7 956 aa15.84■□□□□ 0.13
CPSF1-208ENST00000532560 DNAJC12Q9UKB3 198 aa15.84■□□□□ 0.13
CPSF1-208ENST00000532560 COL4A3Q01955 1670 aa15.83■□□□□ 0.13
CPSF1-208ENST00000532560 LRRC10BA6NIK2 292 aa15.83■□□□□ 0.12
CPSF1-208ENST00000532560 LGALS16A8MUM7 142 aa15.83■□□□□ 0.12
CPSF1-208ENST00000532560 TULP2O00295 520 aa15.83■□□□□ 0.12
CPSF1-208ENST00000532560 MED7O43513 233 aa15.83■□□□□ 0.12
CPSF1-208ENST00000532560 TLR5O60602 858 aa15.83■□□□□ 0.12
CPSF1-208ENST00000532560 CALCAP01258 141 aa15.83■□□□□ 0.12
CPSF1-208ENST00000532560 MBL2P11226 248 aaPredicted RBP15.83■□□□□ 0.12
CPSF1-208ENST00000532560 GLULP15104 373 aa15.83■□□□□ 0.12
CPSF1-208ENST00000532560 AOC1P19801 751 aa15.83■□□□□ 0.12
CPSF1-208ENST00000532560 GNA15P30679 374 aa15.83■□□□□ 0.12
CPSF1-208ENST00000532560 PGFP49763 221 aa15.83■□□□□ 0.12
CPSF1-208ENST00000532560 ZNF165P49910 485 aa15.83■□□□□ 0.12
CPSF1-208ENST00000532560 TKTL1P51854 596 aa15.83■□□□□ 0.12
CPSF1-208ENST00000532560 VCPP55072 806 aaKnown RBP15.83■□□□□ 0.12
CPSF1-208ENST00000532560 ZNF445P59923 1031 aa15.83■□□□□ 0.12
CPSF1-208ENST00000532560 ZXDBP98169 803 aa15.83■□□□□ 0.12
CPSF1-208ENST00000532560 FKBP15Q5T1M5 1219 aa15.83■□□□□ 0.12
CPSF1-208ENST00000532560 CC2D1AQ6P1N0 951 aaPredicted RBP15.83■□□□□ 0.12
CPSF1-208ENST00000532560 DDX42Q86XP3 938 aaKnown RBP eCLIP15.83■□□□□ 0.12
CPSF1-208ENST00000532560 UBA3Q8TBC4 463 aa15.83■□□□□ 0.12
CPSF1-208ENST00000532560 SLC35F5Q8WV83 523 aa15.83■□□□□ 0.12
CPSF1-208ENST00000532560 OSCP1Q8WVF1 389 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms