RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 SPEF1Q9Y4P9 236 aa4.83□□□□□ -1.64
CD44-235ENST00000532339 BAHCC1Q9P281 2608 aa4.83□□□□□ -1.64
CD44-235ENST00000532339 PRUNE2Q8WUY3 3088 aa4.82□□□□□ -1.64
CD44-235ENST00000532339 MUC6Q6W4X9 2439 aa4.82□□□□□ -1.64
CD44-235ENST00000532339 ADM5C9JUS6 153 aa4.82□□□□□ -1.64
CD44-235ENST00000532339 E9PLN8 166 aa4.82□□□□□ -1.64
CD44-235ENST00000532339 H0YIN7 160 aa4.82□□□□□ -1.64
CD44-235ENST00000532339 INO80B-WBP1J3KQ70 363 aa4.82□□□□□ -1.64
CD44-235ENST00000532339 F2RL2O00254 374 aa4.82□□□□□ -1.64
CD44-235ENST00000532339 POLRMTO00411 1230 aaKnown RBP4.82□□□□□ -1.64
CD44-235ENST00000532339 ABLIM3O94929 683 aa4.82□□□□□ -1.64
CD44-235ENST00000532339 CHEK2O96017 543 aa4.82□□□□□ -1.64
CD44-235ENST00000532339 CHRM2P08172 466 aa4.82□□□□□ -1.64
CD44-235ENST00000532339 NPTX2P47972 431 aa4.82□□□□□ -1.64
CD44-235ENST00000532339 SNAPC2Q13487 334 aa4.82□□□□□ -1.64
CD44-235ENST00000532339 PTPN21Q16825 1174 aa4.82□□□□□ -1.64
CD44-235ENST00000532339 KHDC1Q4VXA5 237 aaKnown RBP4.82□□□□□ -1.64
CD44-235ENST00000532339 TSTD2Q5T7W7 516 aa4.82□□□□□ -1.64
CD44-235ENST00000532339 LRCH2Q5VUJ6 765 aa4.82□□□□□ -1.64
CD44-235ENST00000532339 SRRM1Q8IYB3 904 aaKnown RBP4.82□□□□□ -1.64
CD44-235ENST00000532339 MIER2Q8N344 545 aa4.82□□□□□ -1.64
CD44-235ENST00000532339 POC1BQ8TC44 478 aa4.82□□□□□ -1.64
CD44-235ENST00000532339 LRIG1Q96JA1 1093 aa4.82□□□□□ -1.64
CD44-235ENST00000532339 VKORC1Q9BQB6 163 aa4.82□□□□□ -1.64
CD44-235ENST00000532339 C1QTNF1Q9BXJ1 281 aa4.82□□□□□ -1.64
CD44-235ENST00000532339 INO80BQ9C086 356 aaPredicted RBP4.82□□□□□ -1.64
CD44-235ENST00000532339 KMT5AQ9NQR1 393 aa4.82□□□□□ -1.64
CD44-235ENST00000532339 AASDHPPTQ9NRN7 309 aa4.82□□□□□ -1.64
CD44-235ENST00000532339 CFAP97Q9P2B7 532 aa4.82□□□□□ -1.64
CD44-235ENST00000532339 GABBR1Q9UBS5 961 aa4.82□□□□□ -1.64
CD44-235ENST00000532339 POLHQ9Y253 713 aa4.82□□□□□ -1.64
CD44-235ENST00000532339 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.82□□□□□ -1.64
CD44-235ENST00000532339 NR2E3Q9Y5X4 410 aa4.82□□□□□ -1.64
CD44-235ENST00000532339 SCN11AQ9UI33 1791 aa4.82□□□□□ -1.64
CD44-235ENST00000532339 A0A0B4J269 797 aa4.81□□□□□ -1.64
CD44-235ENST00000532339 CCDC194A0A1B0GVG4 234 aa4.81□□□□□ -1.64
CD44-235ENST00000532339 E2F8A0AVK6 867 aa4.81□□□□□ -1.64
CD44-235ENST00000532339 TRIAP1O43715 76 aa4.81□□□□□ -1.64
CD44-235ENST00000532339 ARIH2O95376 493 aa4.81□□□□□ -1.64
CD44-235ENST00000532339 FTH1P19P0C7X4 201 aa4.81□□□□□ -1.64
CD44-235ENST00000532339 CCND1P24385 295 aa4.81□□□□□ -1.64
CD44-235ENST00000532339 DSC2Q02487 901 aa4.81□□□□□ -1.64
CD44-235ENST00000532339 FOXF2Q12947 444 aa4.81□□□□□ -1.64
CD44-235ENST00000532339 HNRNPA0Q13151 305 aaKnown RBP4.81□□□□□ -1.64
CD44-235ENST00000532339 TUBB3Q13509 450 aa4.81□□□□□ -1.64
CD44-235ENST00000532339 ITPK1Q13572 414 aa4.81□□□□□ -1.64
CD44-235ENST00000532339 LRIT3Q3SXY7 679 aa4.81□□□□□ -1.64
CD44-235ENST00000532339 ZNF788Q6ZQV5 615 aa4.81□□□□□ -1.64
CD44-235ENST00000532339 C2CD5Q86YS7 1000 aa4.81□□□□□ -1.64
CD44-235ENST00000532339 WDR75Q8IWA0 830 aaKnown RBP4.81□□□□□ -1.64
CD44-235ENST00000532339 C3orf20Q8ND61 904 aa4.81□□□□□ -1.64
CD44-235ENST00000532339 CDK19Q9BWU1 502 aa4.81□□□□□ -1.64
CD44-235ENST00000532339 RHOBTB2Q9BYZ6 727 aa4.81□□□□□ -1.64
CD44-235ENST00000532339 KLC4Q9NSK0 619 aa4.81□□□□□ -1.64
CD44-235ENST00000532339 AKAP11Q9UKA4 1901 aa4.81□□□□□ -1.64
CD44-235ENST00000532339 FER1L6Q2WGJ9 1857 aa4.81□□□□□ -1.64
CD44-235ENST00000532339 DLEC1Q9Y238 1755 aa4.81□□□□□ -1.64
CD44-235ENST00000532339 ROCK1Q13464 1354 aa4.8□□□□□ -1.64
CD44-235ENST00000532339 WDR27A2RRH5 827 aa4.8□□□□□ -1.64
CD44-235ENST00000532339 ZNF785A8K8V0 405 aa4.8□□□□□ -1.64
CD44-235ENST00000532339 NT5C1B-RDH14C9J2C7 533 aa4.8□□□□□ -1.64
CD44-235ENST00000532339 F5H697 171 aa4.8□□□□□ -1.64
CD44-235ENST00000532339 GCOM1H8Y6P7 765 aaPredicted RBP4.8□□□□□ -1.64
CD44-235ENST00000532339 DTNBO60941 627 aa4.8□□□□□ -1.64
CD44-235ENST00000532339 SOAT2O75908 522 aa4.8□□□□□ -1.64
CD44-235ENST00000532339 GJB1P08034 283 aa4.8□□□□□ -1.64
CD44-235ENST00000532339 NDUFV1P49821 464 aa4.8□□□□□ -1.64
CD44-235ENST00000532339 PSMC1P62191 440 aaKnown RBP4.8□□□□□ -1.64
CD44-235ENST00000532339 ODF1Q14990 250 aa4.8□□□□□ -1.64
CD44-235ENST00000532339 FAM153CQ494X1 144 aa4.8□□□□□ -1.64
CD44-235ENST00000532339 THEMIS2Q5TEJ8 643 aa4.8□□□□□ -1.64
CD44-235ENST00000532339 PBKQ96KB5 322 aa4.8□□□□□ -1.64
CD44-235ENST00000532339 GUCD1Q96NT3 240 aa4.8□□□□□ -1.64
CD44-235ENST00000532339 OSBPL9Q96SU4 736 aa4.8□□□□□ -1.64
CD44-235ENST00000532339 CNPPD1Q9BV87 410 aa4.8□□□□□ -1.64
CD44-235ENST00000532339 ALG8Q9BVK2 526 aa4.8□□□□□ -1.64
CD44-235ENST00000532339 SIK2Q9H0K1 926 aa4.8□□□□□ -1.64
CD44-235ENST00000532339 GEMIN8Q9NWZ8 242 aaKnown RBP4.8□□□□□ -1.64
CD44-235ENST00000532339 WNT6Q9Y6F9 365 aa4.8□□□□□ -1.64
CD44-235ENST00000532339 NFAT5O94916 1531 aa4.79□□□□□ -1.64
CD44-235ENST00000532339 POLR2AP24928 1970 aaKnown RBP4.79□□□□□ -1.64
CD44-235ENST00000532339 LINC00473A8K010 186 aa4.79□□□□□ -1.64
CD44-235ENST00000532339 SLC16A6O15403 523 aa4.79□□□□□ -1.64
CD44-235ENST00000532339 PRPF3O43395 683 aaKnown RBP4.79□□□□□ -1.64
CD44-235ENST00000532339 PRC1O43663 620 aa4.79□□□□□ -1.64
CD44-235ENST00000532339 URI1O94763 535 aaPredicted RBP4.79□□□□□ -1.64
CD44-235ENST00000532339 ELFN1P0C7U0 828 aa4.79□□□□□ -1.64
CD44-235ENST00000532339 LPOP22079 712 aaPredicted RBP4.79□□□□□ -1.64
CD44-235ENST00000532339 TM4SF1P30408 202 aa4.79□□□□□ -1.64
CD44-235ENST00000532339 PIK3CGP48736 1102 aa4.79□□□□□ -1.64
CD44-235ENST00000532339 PROK1P58294 105 aa4.79□□□□□ -1.64
CD44-235ENST00000532339 HABP2Q14520 560 aaPredicted RBP4.79□□□□□ -1.64
CD44-235ENST00000532339 FAM102BQ5T8I3 360 aa4.79□□□□□ -1.64
CD44-235ENST00000532339 NXNQ6DKJ4 435 aa4.79□□□□□ -1.64
CD44-235ENST00000532339 SLC30A10Q6XR72 485 aa4.79□□□□□ -1.64
CD44-235ENST00000532339 CHPFQ8IZ52 775 aa4.79□□□□□ -1.64
CD44-235ENST00000532339 MYO1HQ8N1T3 1032 aa4.79□□□□□ -1.64
CD44-235ENST00000532339 SH2D3CQ8N5H7 860 aa4.79□□□□□ -1.64
CD44-235ENST00000532339 HAPLN3Q96S86 360 aa4.79□□□□□ -1.64
CD44-235ENST00000532339 HTATIP2Q9BUP3 242 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms