RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 IGSF21Q96ID5 467 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 TNIP3Q96KP6 325 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 ASB16Q96NS5 453 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 SAMD11Q96NU1 681 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 TGS1Q96RS0 853 aaKnown RBP7.86□□□□□ -1.15
CD44-228ENST00000528455 BAG1Q99933 345 aaPredicted RBP7.86□□□□□ -1.15
CD44-228ENST00000528455 PLVAPQ9BX97 442 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 NT5C1AQ9BXI3 368 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 GPR62Q9BZJ7 368 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 SDCBP2Q9H190 292 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 CHRDQ9H2X0 955 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 SNX25Q9H3E2 840 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 IGFLR1Q9H665 355 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 CHST7Q9NS84 486 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 PUF60Q9UHX1 559 aaKnown RBP7.86□□□□□ -1.15
CD44-228ENST00000528455 FOXD3Q9UJU5 478 aaPredicted RBP7.86□□□□□ -1.15
CD44-228ENST00000528455 SSX2IPQ9Y2D8 614 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 MTCH2Q9Y6C9 303 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 REV3LO60673 3130 aa7.86□□□□□ -1.15
CD44-228ENST00000528455 SF3B1O75533 1304 aaKnown RBP eCLIP7.85□□□□□ -1.15
CD44-228ENST00000528455 VCANP13611 3396 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 EPOPA6NHQ4 379 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 A8MXQ7 604 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 NT5C1B-RDH14C9J2C7 533 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 C5orf67F2Z3F1 127 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 H7C4K7 107 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 MED7O43513 233 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 ARHGEF15O94989 841 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 ITGB1P05556 798 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 VDRP11473 427 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 GZMAP12544 262 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 KRT5P13647 590 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 CYP11B1P15538 503 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 TNFAIP3P21580 790 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 LMO2P25791 158 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 PCSK1P29120 753 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 USP8P40818 1118 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 BRCC3P46736 316 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 NDST1P52848 882 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 NRLP54845 237 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 GPLD1P80108 840 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 YWHAHQ04917 246 aaPredicted RBP7.85□□□□□ -1.15
CD44-228ENST00000528455 SMARCB1Q12824 385 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 BMS1Q14692 1282 aaKnown RBP7.85□□□□□ -1.15
CD44-228ENST00000528455 ASIC2Q16515 512 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 ASTE1Q2TB18 679 aaPredicted RBP7.85□□□□□ -1.15
CD44-228ENST00000528455 C10orf76Q5T2E6 689 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 FAM171A1Q5VUB5 890 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 FUT10Q6P4F1 479 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 FAM171BQ6P995 826 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.85□□□□□ -1.15
CD44-228ENST00000528455 VPS36Q86VN1 386 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 RNF168Q8IYW5 571 aaPredicted RBP7.85□□□□□ -1.15
CD44-228ENST00000528455 ADGRF2Q8IZF7 708 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 MICALL1Q8N3F8 863 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 ZSCAN1Q8NBB4 408 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 SLC4A11Q8NBS3 891 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 SLC30A5Q8TAD4 765 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 KBTBD7Q8WVZ9 684 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 ATXN2LQ8WWM7 1075 aaKnown RBP7.85□□□□□ -1.15
CD44-228ENST00000528455 DDX1Q92499 740 aaKnown RBP7.85□□□□□ -1.15
CD44-228ENST00000528455 RABGGTAQ92696 567 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 TMEM169Q96HH4 297 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 CCDC42Q96M95 316 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 DMRTB1Q96MA1 342 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 HEXIM2Q96MH2 286 aaKnown RBP7.85□□□□□ -1.15
CD44-228ENST00000528455 CHP1Q99653 195 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 MRPL45Q9BRJ2 306 aaKnown RBP7.85□□□□□ -1.15
CD44-228ENST00000528455 ZNF518BQ9C0D4 1074 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 LHX5Q9H2C1 402 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 HAUS4Q9H6D7 363 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 SMYD3Q9H7B4 428 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 NHEJ1Q9H9Q4 299 aaPredicted RBP7.85□□□□□ -1.15
CD44-228ENST00000528455 LMCD1Q9NZU5 365 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 THEGQ9P2T0 379 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 CACNG4Q9UBN1 327 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 AJAP1Q9UKB5 411 aaPredicted RBP7.85□□□□□ -1.15
CD44-228ENST00000528455 CDH9Q9ULB4 789 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 MTUS1Q9ULD2 1270 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 L1RE1Q9UN81 338 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 LZTS1Q9Y250 596 aa7.85□□□□□ -1.15
CD44-228ENST00000528455 PRG3Q9Y2Y8 225 aaPredicted RBP7.85□□□□□ -1.15
CD44-228ENST00000528455 MRPL42Q9Y6G3 142 aaKnown RBP7.85□□□□□ -1.15
CD44-228ENST00000528455 EPN1Q9Y6I3 576 aaPredicted RBP7.85□□□□□ -1.15
CD44-228ENST00000528455 PRRC2BQ5JSZ5 2229 aaKnown RBP7.84□□□□□ -1.15
CD44-228ENST00000528455 COL4A6Q14031 1691 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 ARHGAP6O43182 974 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 TBC1D4O60343 1298 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 LPXNO60711 386 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 CLSTN1O94985 981 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 LCA5LO95447 670 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 SOD2P04179 222 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 PDGFRBP09619 1106 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 LINC00271P0C7V0 271 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 SKILP12757 684 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 PTPN1P18031 435 aaKnown RBP7.84□□□□□ -1.15
CD44-228ENST00000528455 CD58P19256 250 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 MRPS5P82675 430 aaKnown RBP7.84□□□□□ -1.15
CD44-228ENST00000528455 INSM1Q01101 510 aaPredicted RBP7.84□□□□□ -1.15
CD44-228ENST00000528455 CDR2Q01850 454 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms