RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 ZNF252P-AS1Q0IIN9 211 aa25.06■■□□□ 1.6
CPSF1-202ENST00000527827 STK38Q15208 465 aa25.06■■□□□ 1.6
CPSF1-202ENST00000527827 PHTF2Q8N3S3 785 aa25.06■■□□□ 1.6
CPSF1-202ENST00000527827 XXYLT1Q8NBI6 393 aa25.06■■□□□ 1.6
CPSF1-202ENST00000527827 B3GALNT2Q8NCR0 500 aa25.06■■□□□ 1.6
CPSF1-202ENST00000527827 SCFD1Q8WVM8 642 aa25.06■■□□□ 1.6
CPSF1-202ENST00000527827 PIGKQ92643 395 aa25.06■■□□□ 1.6
CPSF1-202ENST00000527827 ZFRQ96KR1 1074 aaKnown RBP25.06■■□□□ 1.6
CPSF1-202ENST00000527827 ZDHHC4Q9NPG8 344 aa25.06■■□□□ 1.6
CPSF1-202ENST00000527827 ARHGEF4Q9NR80 690 aa25.06■■□□□ 1.6
CPSF1-202ENST00000527827 TBC1D14Q9P2M4 693 aa25.06■■□□□ 1.6
CPSF1-202ENST00000527827 E2F8A0AVK6 867 aa25.05■■□□□ 1.6
CPSF1-202ENST00000527827 A8MXQ7 604 aa25.05■■□□□ 1.6
CPSF1-202ENST00000527827 COCHO43405 550 aa25.05■■□□□ 1.6
CPSF1-202ENST00000527827 ADAM23O75077 832 aa25.05■■□□□ 1.6
CPSF1-202ENST00000527827 GRIA2P42262 883 aa25.05■■□□□ 1.6
CPSF1-202ENST00000527827 TNFRSF4P43489 277 aa25.05■■□□□ 1.6
CPSF1-202ENST00000527827 EHHADHQ08426 723 aa25.05■■□□□ 1.6
CPSF1-202ENST00000527827 LY6G5CQ5SRR4 150 aa25.05■■□□□ 1.6
CPSF1-202ENST00000527827 NELFCDQ8IXH7 590 aa25.05■■□□□ 1.6
CPSF1-202ENST00000527827 WHAMMQ8TF30 809 aa25.05■■□□□ 1.6
CPSF1-202ENST00000527827 DHX58Q96C10 678 aa25.05■■□□□ 1.6
CPSF1-202ENST00000527827 POLMQ9NP87 494 aaPredicted RBP25.05■■□□□ 1.6
CPSF1-202ENST00000527827 NXF1Q9UBU9 619 aaKnown RBP25.05■■□□□ 1.6
CPSF1-202ENST00000527827 EVLQ9UI08 416 aaPredicted RBP25.05■■□□□ 1.6
CPSF1-202ENST00000527827 MBD1Q9UIS9 605 aaPredicted RBP25.05■■□□□ 1.6
CPSF1-202ENST00000527827 SPTLC2O15270 562 aa25.04■■□□□ 1.6
CPSF1-202ENST00000527827 RTN3O95197 1032 aaPredicted RBP25.04■■□□□ 1.6
CPSF1-202ENST00000527827 CSRP1P21291 193 aaKnown RBP25.04■■□□□ 1.6
CPSF1-202ENST00000527827 SNRPFP62306 86 aaKnown RBP25.04■■□□□ 1.6
CPSF1-202ENST00000527827 AMPD3Q01432 767 aa25.04■■□□□ 1.6
CPSF1-202ENST00000527827 MAP7D1Q3KQU3 841 aa25.04■■□□□ 1.6
CPSF1-202ENST00000527827 EOGTQ5NDL2 527 aa25.04■■□□□ 1.6
CPSF1-202ENST00000527827 PDZD8Q8NEN9 1154 aa25.04■■□□□ 1.6
CPSF1-202ENST00000527827 OVCA2Q8WZ82 227 aa25.04■■□□□ 1.6
CPSF1-202ENST00000527827 FBXO32Q969P5 355 aa25.04■■□□□ 1.6
CPSF1-202ENST00000527827 INTS4Q96HW7 963 aaKnown RBP25.04■■□□□ 1.6
CPSF1-202ENST00000527827 KCNK16Q96T55 309 aa25.04■■□□□ 1.6
CPSF1-202ENST00000527827 C7orf25Q9BPX7 421 aa25.04■■□□□ 1.6
CPSF1-202ENST00000527827 CHORDC1Q9UHD1 332 aaPredicted RBP25.04■■□□□ 1.6
CPSF1-202ENST00000527827 UBE4BO95155 1302 aa25.04■■□□□ 1.6
CPSF1-202ENST00000527827 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa25.03■■□□□ 1.6
CPSF1-202ENST00000527827 C1QTNF9BB2RNN3 333 aa25.03■■□□□ 1.6
CPSF1-202ENST00000527827 C1QTNF9P0C862 333 aa25.03■■□□□ 1.6
CPSF1-202ENST00000527827 CEACAM1P13688 526 aa25.03■■□□□ 1.6
CPSF1-202ENST00000527827 ATICP31939 592 aa25.03■■□□□ 1.6
CPSF1-202ENST00000527827 PTGER3P43115 390 aa25.03■■□□□ 1.6
CPSF1-202ENST00000527827 FOXC1Q12948 553 aa25.03■■□□□ 1.6
CPSF1-202ENST00000527827 TRPC3Q13507 836 aa25.03■■□□□ 1.6
CPSF1-202ENST00000527827 PAQR9Q6ZVX9 377 aa25.03■■□□□ 1.6
CPSF1-202ENST00000527827 LPCAT2Q7L5N7 544 aa25.03■■□□□ 1.6
CPSF1-202ENST00000527827 ETFBKMTQ8IXQ9 262 aa25.03■■□□□ 1.6
CPSF1-202ENST00000527827 TMEFF1Q8IYR6 380 aa25.03■■□□□ 1.6
CPSF1-202ENST00000527827 SCAMP5Q8TAC9 235 aa25.03■■□□□ 1.6
CPSF1-202ENST00000527827 HMGB4Q8WW32 186 aa25.03■■□□□ 1.6
CPSF1-202ENST00000527827 SMYD3Q9H7B4 428 aa25.03■■□□□ 1.6
CPSF1-202ENST00000527827 TMEM74BQ9NUR3 256 aa25.03■■□□□ 1.6
CPSF1-202ENST00000527827 IL37Q9NZH6 218 aa25.03■■□□□ 1.6
CPSF1-202ENST00000527827 CIZ1Q9ULV3 898 aaPredicted RBP25.03■■□□□ 1.6
CPSF1-202ENST00000527827 CEP192Q8TEP8 1941 aa25.03■■□□□ 1.6
CPSF1-202ENST00000527827 PALM2-AKAP2B1ALY0 433 aaPredicted RBP25.02■■□□□ 1.6
CPSF1-202ENST00000527827 TNFRSF10BO14763 440 aa25.02■■□□□ 1.6
CPSF1-202ENST00000527827 STX6O43752 255 aa25.02■■□□□ 1.6
CPSF1-202ENST00000527827 PPP6R2O75170 966 aa25.02■■□□□ 1.6
CPSF1-202ENST00000527827 CDH8P55286 799 aa25.02■■□□□ 1.6
CPSF1-202ENST00000527827 GAD2Q05329 585 aa25.02■■□□□ 1.6
CPSF1-202ENST00000527827 TRIM61Q5EBN2 209 aa25.02■■□□□ 1.6
CPSF1-202ENST00000527827 HECTD3Q5T447 861 aa25.02■■□□□ 1.6
CPSF1-202ENST00000527827 SNX30Q5VWJ9 437 aa25.02■■□□□ 1.6
CPSF1-202ENST00000527827 SHC4Q6S5L8 630 aa25.02■■□□□ 1.6
CPSF1-202ENST00000527827 UNQ6494/PRO21346Q6UXR6 183 aa25.02■■□□□ 1.6
CPSF1-202ENST00000527827 UNC13DQ70J99 1090 aa25.02■■□□□ 1.6
CPSF1-202ENST00000527827 ARMCX6Q7L4S7 300 aa25.02■■□□□ 1.6
CPSF1-202ENST00000527827 FAM35AQ86V20 835 aa25.02■■□□□ 1.6
CPSF1-202ENST00000527827 IQUBQ8NA54 791 aa25.02■■□□□ 1.6
CPSF1-202ENST00000527827 PLEKHO2Q8TD55 490 aa25.02■■□□□ 1.6
CPSF1-202ENST00000527827 WBP2Q969T9 261 aa25.02■■□□□ 1.6
CPSF1-202ENST00000527827 SYAP1Q96A49 352 aaPredicted RBP25.02■■□□□ 1.6
CPSF1-202ENST00000527827 OTUB2Q96DC9 234 aa25.02■■□□□ 1.6
CPSF1-202ENST00000527827 SPACA7Q96KW9 195 aa25.02■■□□□ 1.6
CPSF1-202ENST00000527827 VRTNQ9H8Y1 702 aa25.02■■□□□ 1.6
CPSF1-202ENST00000527827 FOXD4L1Q9NU39 408 aa25.02■■□□□ 1.6
CPSF1-202ENST00000527827 BCCIPQ9P287 314 aaKnown RBP eCLIP25.02■■□□□ 1.6
CPSF1-202ENST00000527827 TFIP11Q9UBB9 837 aaKnown RBP25.02■■□□□ 1.6
CPSF1-202ENST00000527827 IGF2RP11717 2491 aa25.01■■□□□ 1.59
CPSF1-202ENST00000527827 MAP3K13O43283 966 aa25.01■■□□□ 1.59
CPSF1-202ENST00000527827 TOP3BO95985 862 aaKnown RBP25.01■■□□□ 1.59
CPSF1-202ENST00000527827 SPINK2P20155 84 aa25.01■■□□□ 1.59
CPSF1-202ENST00000527827 CASP1P29466 404 aa25.01■■□□□ 1.59
CPSF1-202ENST00000527827 CASP4P49662 377 aa25.01■■□□□ 1.59
CPSF1-202ENST00000527827 UAP1L1Q3KQV9 507 aa25.01■■□□□ 1.59
CPSF1-202ENST00000527827 SYT12Q8IV01 421 aa25.01■■□□□ 1.59
CPSF1-202ENST00000527827 C12orf56Q8IXR9 622 aa25.01■■□□□ 1.59
CPSF1-202ENST00000527827 NAT16Q8N8M0 369 aa25.01■■□□□ 1.59
CPSF1-202ENST00000527827 TMEM121BQ9BXQ6 578 aaPredicted RBP25.01■■□□□ 1.59
CPSF1-202ENST00000527827 CCSER2Q9H7U1 834 aa25.01■■□□□ 1.59
CPSF1-202ENST00000527827 PCNX2A6NKB5 2137 aa25.01■■□□□ 1.59
CPSF1-202ENST00000527827 TCRBV21S2A2A0A5A6 115 aa25■■□□□ 1.59
CPSF1-202ENST00000527827 HOXC11O43248 304 aaPredicted RBP25■■□□□ 1.59
CPSF1-202ENST00000527827 SLC5A3P53794 718 aa25■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms