RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 TXNDC11Q6PKC3 985 aa21.8■■□□□ 1.08
VPS28-206ENST00000526734 CLEC17AQ6ZS10 378 aa21.8■■□□□ 1.08
VPS28-206ENST00000526734 MAML2Q8IZL2 1156 aaPredicted RBP21.8■■□□□ 1.08
VPS28-206ENST00000526734 SPEM1Q8N4L4 309 aa21.8■■□□□ 1.08
VPS28-206ENST00000526734 SCAMP5Q8TAC9 235 aa21.8■■□□□ 1.08
VPS28-206ENST00000526734 TLR8Q9NR97 1041 aaKnown RBP21.8■■□□□ 1.08
VPS28-206ENST00000526734 CPQQ9Y646 472 aa21.8■■□□□ 1.08
VPS28-206ENST00000526734 ANAPC1Q9H1A4 1944 aa21.79■■□□□ 1.08
VPS28-206ENST00000526734 PATJQ8NI35 1801 aa21.79■■□□□ 1.08
VPS28-206ENST00000526734 TRDMT1O14717 391 aaKnown RBP21.79■■□□□ 1.08
VPS28-206ENST00000526734 BEST1O76090 585 aa21.79■■□□□ 1.08
VPS28-206ENST00000526734 MBL2P11226 248 aaPredicted RBP21.79■■□□□ 1.08
VPS28-206ENST00000526734 ARSAP15289 507 aa21.79■■□□□ 1.08
VPS28-206ENST00000526734 SLC8A3P57103 927 aa21.79■■□□□ 1.08
VPS28-206ENST00000526734 GRSF1Q12849 480 aaKnown RBP eCLIP21.79■■□□□ 1.08
VPS28-206ENST00000526734 PON2Q15165 354 aa21.79■■□□□ 1.08
VPS28-206ENST00000526734 EML3Q32P44 896 aa21.79■■□□□ 1.08
VPS28-206ENST00000526734 ARHGAP17Q68EM7 881 aa21.79■■□□□ 1.08
VPS28-206ENST00000526734 TRIM68Q6AZZ1 485 aa21.79■■□□□ 1.08
VPS28-206ENST00000526734 TTC8Q8TAM2 541 aa21.79■■□□□ 1.08
VPS28-206ENST00000526734 HEXIM2Q96MH2 286 aaKnown RBP21.79■■□□□ 1.08
VPS28-206ENST00000526734 DUSP16Q9BY84 665 aa21.79■■□□□ 1.08
VPS28-206ENST00000526734 ECT2Q9H8V3 914 aa21.79■■□□□ 1.08
VPS28-206ENST00000526734 SCML2Q9UQR0 700 aa21.79■■□□□ 1.08
VPS28-206ENST00000526734 PCDHGA2Q9Y5H1 932 aa21.79■■□□□ 1.08
VPS28-206ENST00000526734 WNT6Q9Y6F9 365 aa21.79■■□□□ 1.08
VPS28-206ENST00000526734 CCDC192P0DO97 292 aa21.78■■□□□ 1.08
VPS28-206ENST00000526734 RAD23BP54727 409 aa21.78■■□□□ 1.08
VPS28-206ENST00000526734 NRLP54845 237 aa21.78■■□□□ 1.08
VPS28-206ENST00000526734 CSTF1Q05048 431 aaKnown RBP21.78■■□□□ 1.08
VPS28-206ENST00000526734 CCINQ13939 588 aa21.78■■□□□ 1.08
VPS28-206ENST00000526734 ZNF394Q53GI3 561 aa21.78■■□□□ 1.08
VPS28-206ENST00000526734 TMEM196Q5HYL7 178 aa21.78■■□□□ 1.08
VPS28-206ENST00000526734 TRIM59Q8IWR1 403 aa21.78■■□□□ 1.08
VPS28-206ENST00000526734 SLC4A11Q8NBS3 891 aa21.78■■□□□ 1.08
VPS28-206ENST00000526734 TATDN2Q93075 761 aa21.78■■□□□ 1.08
VPS28-206ENST00000526734 NT5C1BQ96P26 610 aa21.78■■□□□ 1.08
VPS28-206ENST00000526734 ARID3AQ99856 593 aa21.78■■□□□ 1.08
VPS28-206ENST00000526734 UBXN6Q9BZV1 441 aa21.78■■□□□ 1.08
VPS28-206ENST00000526734 RNF38Q9H0F5 515 aa21.78■■□□□ 1.08
VPS28-206ENST00000526734 GMIPQ9P107 970 aa21.78■■□□□ 1.08
VPS28-206ENST00000526734 TBC1D14Q9P2M4 693 aa21.78■■□□□ 1.08
VPS28-206ENST00000526734 RWDD2AQ9UIY3 292 aa21.78■■□□□ 1.08
VPS28-206ENST00000526734 ZNF638Q14966 1978 aaKnown RBP21.78■■□□□ 1.08
VPS28-206ENST00000526734 E2F8A0AVK6 867 aa21.77■■□□□ 1.08
VPS28-206ENST00000526734 PRR23AA6NEV1 266 aa21.77■■□□□ 1.08
VPS28-206ENST00000526734 HHLA1C9JL84 531 aa21.77■■□□□ 1.08
VPS28-206ENST00000526734 COCHO43405 550 aa21.77■■□□□ 1.08
VPS28-206ENST00000526734 PAPSS2O95340 614 aaPredicted RBP21.77■■□□□ 1.08
VPS28-206ENST00000526734 DRD1P21728 446 aa21.77■■□□□ 1.08
VPS28-206ENST00000526734 PSEN1P49768 467 aa21.77■■□□□ 1.08
VPS28-206ENST00000526734 CAMK4Q16566 473 aa21.77■■□□□ 1.08
VPS28-206ENST00000526734 FBXO43Q4G163 708 aa21.77■■□□□ 1.08
VPS28-206ENST00000526734 PPP1R26Q5T8A7 1209 aaPredicted RBP21.77■■□□□ 1.08
VPS28-206ENST00000526734 MLKLQ8NB16 471 aa21.77■■□□□ 1.08
VPS28-206ENST00000526734 TTC16Q8NEE8 873 aa21.77■■□□□ 1.08
VPS28-206ENST00000526734 CCDC26Q8TAB7 109 aa21.77■■□□□ 1.08
VPS28-206ENST00000526734 NELL1Q92832 810 aa21.77■■□□□ 1.08
VPS28-206ENST00000526734 OTUB2Q96DC9 234 aa21.77■■□□□ 1.08
VPS28-206ENST00000526734 NACA2Q9H009 215 aa21.77■■□□□ 1.08
VPS28-206ENST00000526734 CLSTN2Q9H4D0 955 aa21.77■■□□□ 1.08
VPS28-206ENST00000526734 ZSCAN32Q9NX65 697 aa21.77■■□□□ 1.08
VPS28-206ENST00000526734 CHORDC1Q9UHD1 332 aaPredicted RBP21.77■■□□□ 1.08
VPS28-206ENST00000526734 KIAA1257Q9ULG3 409 aa21.77■■□□□ 1.08
VPS28-206ENST00000526734 ACO1P21399 889 aaKnown RBP21.76■■□□□ 1.07
VPS28-206ENST00000526734 GJA4P35212 333 aa21.76■■□□□ 1.07
VPS28-206ENST00000526734 CXCL12P48061 93 aa21.76■■□□□ 1.07
VPS28-206ENST00000526734 STX17P56962 302 aa21.76■■□□□ 1.07
VPS28-206ENST00000526734 TADA2BQ86TJ2 420 aa21.76■■□□□ 1.07
VPS28-206ENST00000526734 P2RY13Q9BPV8 354 aa21.76■■□□□ 1.07
VPS28-206ENST00000526734 SRRTQ9BXP5 876 aaKnown RBP21.76■■□□□ 1.07
VPS28-206ENST00000526734 CYLDQ9NQC7 956 aa21.76■■□□□ 1.07
VPS28-206ENST00000526734 SMPD4Q9NXE4 827 aa21.76■■□□□ 1.07
VPS28-206ENST00000526734 CFAP97Q9P2B7 532 aa21.76■■□□□ 1.07
VPS28-206ENST00000526734 UTP18Q9Y5J1 556 aaKnown RBP eCLIP21.76■■□□□ 1.07
VPS28-206ENST00000526734 HELZP42694 1942 aaKnown RBP21.76■■□□□ 1.07
VPS28-206ENST00000526734 OTOL1A6NHN0 477 aaPredicted RBP21.75■■□□□ 1.07
VPS28-206ENST00000526734 TLR5O60602 858 aa21.75■■□□□ 1.07
VPS28-206ENST00000526734 AFPP02771 609 aaKnown RBP21.75■■□□□ 1.07
VPS28-206ENST00000526734 KIF11P52732 1056 aa21.75■■□□□ 1.07
VPS28-206ENST00000526734 ZXDBP98169 803 aa21.75■■□□□ 1.07
VPS28-206ENST00000526734 SGO2Q562F6 1265 aa21.75■■□□□ 1.07
VPS28-206ENST00000526734 KLHDC10Q6PID8 442 aa21.75■■□□□ 1.07
VPS28-206ENST00000526734 CCDC186Q7Z3E2 898 aa21.75■■□□□ 1.07
VPS28-206ENST00000526734 ANKRD52Q8NB46 1076 aa21.75■■□□□ 1.07
VPS28-206ENST00000526734 ZBTB44Q8NCP5 570 aa21.75■■□□□ 1.07
VPS28-206ENST00000526734 CDK5RAP1Q96SZ6 601 aaKnown RBP21.75■■□□□ 1.07
VPS28-206ENST00000526734 HESX1Q9UBX0 185 aa21.75■■□□□ 1.07
VPS28-206ENST00000526734 ATG13O75143 517 aa21.74■■□□□ 1.07
VPS28-206ENST00000526734 LMNAP02545 664 aaKnown RBP21.74■■□□□ 1.07
VPS28-206ENST00000526734 PAEPP09466 180 aa21.74■■□□□ 1.07
VPS28-206ENST00000526734 BCAT1P54687 386 aa21.74■■□□□ 1.07
VPS28-206ENST00000526734 GCNT1Q02742 428 aa21.74■■□□□ 1.07
VPS28-206ENST00000526734 GOLGA8FQ08AF8 430 aa21.74■■□□□ 1.07
VPS28-206ENST00000526734 GOLGA8DPQ0D2H9 430 aa21.74■■□□□ 1.07
VPS28-206ENST00000526734 KCNH2Q12809 1159 aa21.74■■□□□ 1.07
VPS28-206ENST00000526734 ASCL5Q7RTU5 278 aa21.74■■□□□ 1.07
VPS28-206ENST00000526734 GPRIN1Q7Z2K8 1008 aa21.74■■□□□ 1.07
VPS28-206ENST00000526734 ARHGAP18Q8N392 663 aa21.74■■□□□ 1.07
VPS28-206ENST00000526734 ZNF276Q8N554 614 aa21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms