RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 CFAP69A5D8W1 941 aa22.15■■□□□ 1.14
VPS28-205ENST00000526204 E5RJQ4 531 aa22.15■■□□□ 1.14
VPS28-205ENST00000526204 DESP17661 470 aa22.15■■□□□ 1.14
VPS28-205ENST00000526204 KRT81Q14533 505 aa22.15■■□□□ 1.14
VPS28-205ENST00000526204 E2F5Q15329 346 aa22.15■■□□□ 1.14
VPS28-205ENST00000526204 FAM183BPQ6ZVS7 135 aa22.15■■□□□ 1.14
VPS28-205ENST00000526204 ZC3H18Q86VM9 953 aaKnown RBP22.15■■□□□ 1.14
VPS28-205ENST00000526204 TMEM130Q8N3G9 435 aa22.15■■□□□ 1.14
VPS28-205ENST00000526204 SHCBP1Q8NEM2 672 aa22.15■■□□□ 1.14
VPS28-205ENST00000526204 NCAPGQ9BPX3 1015 aa22.15■■□□□ 1.14
VPS28-205ENST00000526204 ADAM33Q9BZ11 813 aa22.15■■□□□ 1.14
VPS28-205ENST00000526204 GBA2Q9HCG7 927 aaPredicted RBP22.15■■□□□ 1.14
VPS28-205ENST00000526204 CHMP2BQ9UQN3 213 aa22.15■■□□□ 1.14
VPS28-205ENST00000526204 H7C0C1 242 aa22.15■■□□□ 1.14
VPS28-205ENST00000526204 DPYSL4O14531 572 aa22.15■■□□□ 1.14
VPS28-205ENST00000526204 HGSO14964 777 aaPredicted RBP22.15■■□□□ 1.14
VPS28-205ENST00000526204 MT-ND3P03897 115 aa22.15■■□□□ 1.14
VPS28-205ENST00000526204 ELK3P41970 407 aa22.15■■□□□ 1.14
VPS28-205ENST00000526204 ATP5OP48047 213 aa22.15■■□□□ 1.14
VPS28-205ENST00000526204 SH3PXD2AQ5TCZ1 1133 aa22.15■■□□□ 1.14
VPS28-205ENST00000526204 NPNTQ6UXI9 565 aa22.15■■□□□ 1.14
VPS28-205ENST00000526204 TCP10LQ8TDR4 215 aa22.15■■□□□ 1.14
VPS28-205ENST00000526204 C10orf82Q8WW14 230 aa22.15■■□□□ 1.14
VPS28-205ENST00000526204 TEKT4Q8WW24 435 aa22.15■■□□□ 1.14
VPS28-205ENST00000526204 USP6NLQ92738 828 aa22.15■■□□□ 1.14
VPS28-205ENST00000526204 TBC1D31Q96DN5 1066 aa22.15■■□□□ 1.14
VPS28-205ENST00000526204 RTP4Q96DX8 246 aa22.15■■□□□ 1.14
VPS28-205ENST00000526204 CYLDQ9NQC7 956 aa22.15■■□□□ 1.14
VPS28-205ENST00000526204 MCM8Q9UJA3 840 aa22.15■■□□□ 1.14
VPS28-205ENST00000526204 TEX264Q9Y6I9 313 aa22.15■■□□□ 1.14
VPS28-205ENST00000526204 POLR2AP24928 1970 aaKnown RBP22.14■■□□□ 1.13
VPS28-205ENST00000526204 CYP3A5P20815 502 aa22.14■■□□□ 1.13
VPS28-205ENST00000526204 TGM2P21980 687 aa22.14■■□□□ 1.13
VPS28-205ENST00000526204 ZNF200P98182 395 aaPredicted RBP22.14■■□□□ 1.13
VPS28-205ENST00000526204 TRNP1Q6NT89 227 aa22.14■■□□□ 1.13
VPS28-205ENST00000526204 OTOAQ7RTW8 1153 aa22.14■■□□□ 1.13
VPS28-205ENST00000526204 AFG1LQ8WV93 481 aa22.14■■□□□ 1.13
VPS28-205ENST00000526204 TBCBQ99426 244 aa22.14■■□□□ 1.13
VPS28-205ENST00000526204 LRMDAQ9H2I8 198 aa22.14■■□□□ 1.13
VPS28-205ENST00000526204 EPB41L3Q9Y2J2 1087 aaPredicted RBP22.14■■□□□ 1.13
VPS28-205ENST00000526204 OTOFQ9HC10 1997 aa22.14■■□□□ 1.13
VPS28-205ENST00000526204 TROVE2P10155 538 aaKnown RBP eCLIP22.13■■□□□ 1.13
VPS28-205ENST00000526204 CCND1P24385 295 aa22.13■■□□□ 1.13
VPS28-205ENST00000526204 ADRA1DP25100 572 aa22.13■■□□□ 1.13
VPS28-205ENST00000526204 SNX16P57768 344 aa22.13■■□□□ 1.13
VPS28-205ENST00000526204 PARP6Q2NL67 630 aa22.13■■□□□ 1.13
VPS28-205ENST00000526204 C15orf59Q2T9L4 293 aaPredicted RBP22.13■■□□□ 1.13
VPS28-205ENST00000526204 ARMCX2Q7L311 632 aa22.13■■□□□ 1.13
VPS28-205ENST00000526204 PLD5Q8N7P1 536 aa22.13■■□□□ 1.13
VPS28-205ENST00000526204 PPTC7Q8NI37 304 aa22.13■■□□□ 1.13
VPS28-205ENST00000526204 SLC44A1Q8WWI5 657 aa22.13■■□□□ 1.13
VPS28-205ENST00000526204 FAF2Q96CS3 445 aa22.13■■□□□ 1.13
VPS28-205ENST00000526204 USP29Q9HBJ7 922 aa22.13■■□□□ 1.13
VPS28-205ENST00000526204 STK38LQ9Y2H1 464 aa22.13■■□□□ 1.13
VPS28-205ENST00000526204 TCRBV9S1A1TA0A576 114 aa22.13■■□□□ 1.13
VPS28-205ENST00000526204 VTNP04004 478 aa22.13■■□□□ 1.13
VPS28-205ENST00000526204 PFKMP08237 780 aa22.13■■□□□ 1.13
VPS28-205ENST00000526204 INHBAP08476 426 aa22.13■■□□□ 1.13
VPS28-205ENST00000526204 RASSF2P50749 326 aa22.13■■□□□ 1.13
VPS28-205ENST00000526204 ATP11AP98196 1134 aa22.13■■□□□ 1.13
VPS28-205ENST00000526204 CCDC14Q49A88 953 aa22.13■■□□□ 1.13
VPS28-205ENST00000526204 SLC45A4Q5BKX6 768 aa22.13■■□□□ 1.13
VPS28-205ENST00000526204 AGGF1Q8N302 714 aaeCLIP22.13■■□□□ 1.13
VPS28-205ENST00000526204 NLRP7Q8WX94 980 aa22.13■■□□□ 1.13
VPS28-205ENST00000526204 INPP5DQ92835 1189 aa22.13■■□□□ 1.13
VPS28-205ENST00000526204 THOC1Q96FV9 657 aaKnown RBP22.13■■□□□ 1.13
VPS28-205ENST00000526204 PPP1R16BQ96T49 567 aa22.13■■□□□ 1.13
VPS28-205ENST00000526204 PNPLA8Q9NP80 782 aa22.13■■□□□ 1.13
VPS28-205ENST00000526204 TRIM33Q9UPN9 1127 aa22.13■■□□□ 1.13
VPS28-205ENST00000526204 C2CD2LO14523 706 aa22.12■■□□□ 1.13
VPS28-205ENST00000526204 APOL1O14791 398 aa22.12■■□□□ 1.13
VPS28-205ENST00000526204 DDNO94850 711 aaPredicted RBP22.12■■□□□ 1.13
VPS28-205ENST00000526204 SETSIPP0DME0 302 aa22.12■■□□□ 1.13
VPS28-205ENST00000526204 PTK7Q13308 1070 aa22.12■■□□□ 1.13
VPS28-205ENST00000526204 GOLGA7BQ2TAP0 167 aa22.12■■□□□ 1.13
VPS28-205ENST00000526204 IGDCC3Q8IVU1 814 aa22.12■■□□□ 1.13
VPS28-205ENST00000526204 KIF12Q96FN5 646 aa22.12■■□□□ 1.13
VPS28-205ENST00000526204 TMEM237Q96Q45 408 aa22.12■■□□□ 1.13
VPS28-205ENST00000526204 EBF2Q9HAK2 575 aa22.12■■□□□ 1.13
VPS28-205ENST00000526204 KBTBD13C9JR72 458 aa22.12■■□□□ 1.13
VPS28-205ENST00000526204 TSPAN1O60635 241 aa22.12■■□□□ 1.13
VPS28-205ENST00000526204 FGFR1P11362 822 aa22.12■■□□□ 1.13
VPS28-205ENST00000526204 CDO1Q16878 200 aa22.12■■□□□ 1.13
VPS28-205ENST00000526204 C1orf228Q6PIY5 440 aa22.12■■□□□ 1.13
VPS28-205ENST00000526204 MTHFD1LQ6UB35 978 aa22.12■■□□□ 1.13
VPS28-205ENST00000526204 C4orf22Q6V702 233 aa22.12■■□□□ 1.13
VPS28-205ENST00000526204 ZNF276Q8N554 614 aa22.12■■□□□ 1.13
VPS28-205ENST00000526204 NLGN2Q8NFZ4 835 aa22.12■■□□□ 1.13
VPS28-205ENST00000526204 AGAP11Q8TF27 550 aa22.12■■□□□ 1.13
VPS28-205ENST00000526204 MANSC1Q9H8J5 431 aa22.12■■□□□ 1.13
VPS28-205ENST00000526204 RAB6BQ9NRW1 208 aa22.12■■□□□ 1.13
VPS28-205ENST00000526204 BCLAF3A2AJT9 711 aaKnown RBP22.11■■□□□ 1.13
VPS28-205ENST00000526204 ZNF487B1APH4 448 aa22.11■■□□□ 1.13
VPS28-205ENST00000526204 LPXNO60711 386 aa22.11■■□□□ 1.13
VPS28-205ENST00000526204 SDC4P31431 198 aa22.11■■□□□ 1.13
VPS28-205ENST00000526204 GRM5P41594 1212 aa22.11■■□□□ 1.13
VPS28-205ENST00000526204 NRLP54845 237 aa22.11■■□□□ 1.13
VPS28-205ENST00000526204 BCAR1P56945 870 aa22.11■■□□□ 1.13
VPS28-205ENST00000526204 YWHAGP61981 247 aaKnown RBP eCLIP22.11■■□□□ 1.13
VPS28-205ENST00000526204 MTM1Q13496 603 aa22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms