RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 PRKCBP05771 671 aa4.88□□□□□ -1.63
CD44-217ENST00000525348 DLDP09622 509 aaKnown RBP4.88□□□□□ -1.63
CD44-217ENST00000525348 BTF3P20290 206 aaKnown RBP4.88□□□□□ -1.63
CD44-217ENST00000525348 MPGP29372 298 aa4.88□□□□□ -1.63
CD44-217ENST00000525348 CARSP49589 748 aaKnown RBP4.88□□□□□ -1.63
CD44-217ENST00000525348 CPT1AP50416 773 aa4.88□□□□□ -1.63
CD44-217ENST00000525348 RENBPP51606 427 aa4.88□□□□□ -1.63
CD44-217ENST00000525348 TIRAPP58753 221 aa4.88□□□□□ -1.63
CD44-217ENST00000525348 TUBA4AP68366 448 aa4.88□□□□□ -1.63
CD44-217ENST00000525348 GRM1Q13255 1194 aa4.88□□□□□ -1.63
CD44-217ENST00000525348 KCNAB1Q14722 419 aa4.88□□□□□ -1.63
CD44-217ENST00000525348 CEP78Q5JTW2 689 aa4.88□□□□□ -1.63
CD44-217ENST00000525348 PPP4R4Q6NUP7 873 aa4.88□□□□□ -1.63
CD44-217ENST00000525348 DAZAP1Q96EP5 407 aaKnown RBP4.88□□□□□ -1.63
CD44-217ENST00000525348 MMS19Q96T76 1030 aa4.88□□□□□ -1.63
CD44-217ENST00000525348 VN1R3Q9BXE9 311 aa4.88□□□□□ -1.63
CD44-217ENST00000525348 CIPCQ9C0C6 399 aa4.88□□□□□ -1.63
CD44-217ENST00000525348 BTBD1Q9H0C5 482 aa4.88□□□□□ -1.63
CD44-217ENST00000525348 ITGB1BP2Q9UKP3 347 aa4.88□□□□□ -1.63
CD44-217ENST00000525348 RIMKLBQ9ULI2 386 aa4.88□□□□□ -1.63
CD44-217ENST00000525348 H7C1Q1 480 aa4.87□□□□□ -1.63
CD44-217ENST00000525348 INO80B-WBP1J3KQ70 363 aa4.87□□□□□ -1.63
CD44-217ENST00000525348 FGAP02671 866 aa4.87□□□□□ -1.63
CD44-217ENST00000525348 MT-ND5P03915 603 aa4.87□□□□□ -1.63
CD44-217ENST00000525348 EPHA3P29320 983 aa4.87□□□□□ -1.63
CD44-217ENST00000525348 NTSR1P30989 418 aa4.87□□□□□ -1.63
CD44-217ENST00000525348 ALDH5A1P51649 535 aaPredicted RBP4.87□□□□□ -1.63
CD44-217ENST00000525348 SLC29A2Q14542 456 aa4.87□□□□□ -1.63
CD44-217ENST00000525348 TBC1D25Q3MII6 688 aa4.87□□□□□ -1.63
CD44-217ENST00000525348 PLAG1Q6DJT9 500 aa4.87□□□□□ -1.63
CD44-217ENST00000525348 BCDIN3DQ7Z5W3 292 aaKnown RBP4.87□□□□□ -1.63
CD44-217ENST00000525348 KRT78Q8N1N4 520 aa4.87□□□□□ -1.63
CD44-217ENST00000525348 METTL25Q8N6Q8 603 aa4.87□□□□□ -1.63
CD44-217ENST00000525348 PNLDC1Q8NA58 520 aaKnown RBP4.87□□□□□ -1.63
CD44-217ENST00000525348 PHKBQ93100 1093 aa4.87□□□□□ -1.63
CD44-217ENST00000525348 SNX18Q96RF0 628 aa4.87□□□□□ -1.63
CD44-217ENST00000525348 QTRT1Q9BXR0 403 aaKnown RBP4.87□□□□□ -1.63
CD44-217ENST00000525348 INO80BQ9C086 356 aaPredicted RBP4.87□□□□□ -1.63
CD44-217ENST00000525348 AMFRQ9UKV5 643 aa4.87□□□□□ -1.63
CD44-217ENST00000525348 USP22Q9UPT9 525 aa4.87□□□□□ -1.63
CD44-217ENST00000525348 CORO2BQ9UQ03 480 aa4.87□□□□□ -1.63
CD44-217ENST00000525348 WDR91A4D1P6 747 aa4.86□□□□□ -1.63
CD44-217ENST00000525348 CES2O00748 559 aa4.86□□□□□ -1.63
CD44-217ENST00000525348 CYP2D6P10635 497 aa4.86□□□□□ -1.63
CD44-217ENST00000525348 SLC5A1P13866 664 aa4.86□□□□□ -1.63
CD44-217ENST00000525348 SFPQP23246 707 aaKnown RBP eCLIP4.86□□□□□ -1.63
CD44-217ENST00000525348 PRKAR1BP31321 381 aa4.86□□□□□ -1.63
CD44-217ENST00000525348 PIK3CBP42338 1070 aa4.86□□□□□ -1.63
CD44-217ENST00000525348 DIO1P49895 249 aa4.86□□□□□ -1.63
CD44-217ENST00000525348 PGDP52209 483 aa4.86□□□□□ -1.63
CD44-217ENST00000525348 SSBP2P81877 361 aaPredicted RBP4.86□□□□□ -1.63
CD44-217ENST00000525348 LMAN2Q12907 356 aa4.86□□□□□ -1.63
CD44-217ENST00000525348 STK3Q13188 491 aa4.86□□□□□ -1.63
CD44-217ENST00000525348 FHL3Q13643 280 aa4.86□□□□□ -1.63
CD44-217ENST00000525348 SUPT20HL1Q3ZLR7 823 aa4.86□□□□□ -1.63
CD44-217ENST00000525348 MTHFD1LQ6UB35 978 aa4.86□□□□□ -1.63
CD44-217ENST00000525348 SIRT6Q8N6T7 355 aa4.86□□□□□ -1.63
CD44-217ENST00000525348 SNX22Q96L94 193 aa4.86□□□□□ -1.63
CD44-217ENST00000525348 ZNF778Q96MU6 729 aa4.86□□□□□ -1.63
CD44-217ENST00000525348 CHPF2Q9P2E5 772 aa4.86□□□□□ -1.63
CD44-217ENST00000525348 VPS51Q9UID3 782 aa4.86□□□□□ -1.63
CD44-217ENST00000525348 CAPN11Q9UMQ6 739 aa4.86□□□□□ -1.63
CD44-217ENST00000525348 A0A087WZ62 844 aa4.85□□□□□ -1.63
CD44-217ENST00000525348 A1BGP04217 495 aa4.85□□□□□ -1.63
CD44-217ENST00000525348 PARP1P09874 1014 aaKnown RBP4.85□□□□□ -1.63
CD44-217ENST00000525348 PRR35P0CG20 571 aa4.85□□□□□ -1.63
CD44-217ENST00000525348 MYCLP12524 364 aaPredicted RBP4.85□□□□□ -1.63
CD44-217ENST00000525348 TPH1P17752 444 aa4.85□□□□□ -1.63
CD44-217ENST00000525348 IL1R2P27930 398 aa4.85□□□□□ -1.63
CD44-217ENST00000525348 EPHB2P29323 1055 aa4.85□□□□□ -1.63
CD44-217ENST00000525348 MCM5P33992 734 aa4.85□□□□□ -1.63
CD44-217ENST00000525348 HNRNPA0Q13151 305 aaKnown RBP4.85□□□□□ -1.63
CD44-217ENST00000525348 ZNF626Q68DY1 528 aa4.85□□□□□ -1.63
CD44-217ENST00000525348 CATSPERGQ6ZRH7 1159 aa4.85□□□□□ -1.63
CD44-217ENST00000525348 PTCHD4Q6ZW05 846 aa4.85□□□□□ -1.63
CD44-217ENST00000525348 USP49Q70CQ1 688 aa4.85□□□□□ -1.63
CD44-217ENST00000525348 C1QL2Q7Z5L3 287 aa4.85□□□□□ -1.63
CD44-217ENST00000525348 SFTPA1Q8IWL2 248 aa4.85□□□□□ -1.63
CD44-217ENST00000525348 YAF2Q8IY57 180 aa4.85□□□□□ -1.63
CD44-217ENST00000525348 C8orf58Q8NAV2 365 aa4.85□□□□□ -1.63
CD44-217ENST00000525348 C5orf34Q96MH7 638 aa4.85□□□□□ -1.63
CD44-217ENST00000525348 ASB2Q96Q27 587 aa4.85□□□□□ -1.63
CD44-217ENST00000525348 SELENOOQ9BVL4 669 aa4.85□□□□□ -1.63
CD44-217ENST00000525348 NUP62CLQ9H1M0 184 aa4.85□□□□□ -1.63
CD44-217ENST00000525348 PDGFCQ9NRA1 345 aa4.85□□□□□ -1.63
CD44-217ENST00000525348 TBC1D23Q9NUY8 699 aa4.85□□□□□ -1.63
CD44-217ENST00000525348 ASAP1Q9ULH1 1129 aa4.85□□□□□ -1.63
CD44-217ENST00000525348 PSMD9O00233 223 aa4.84□□□□□ -1.63
CD44-217ENST00000525348 EXOC5O00471 708 aa4.84□□□□□ -1.63
CD44-217ENST00000525348 PPP6CO00743 305 aa4.84□□□□□ -1.63
CD44-217ENST00000525348 PQBP1O60828 265 aaKnown RBP4.84□□□□□ -1.63
CD44-217ENST00000525348 APEHP13798 732 aaKnown RBP4.84□□□□□ -1.63
CD44-217ENST00000525348 LMO1P25800 156 aa4.84□□□□□ -1.63
CD44-217ENST00000525348 GATMP50440 423 aa4.84□□□□□ -1.63
CD44-217ENST00000525348 DEUP1Q05D60 604 aa4.84□□□□□ -1.63
CD44-217ENST00000525348 DAG1Q14118 895 aa4.84□□□□□ -1.63
CD44-217ENST00000525348 SRSF7Q16629 238 aaKnown RBP eCLIP4.84□□□□□ -1.63
CD44-217ENST00000525348 AWAT1Q58HT5 328 aa4.84□□□□□ -1.63
CD44-217ENST00000525348 MANEALQ5VSG8 457 aa4.84□□□□□ -1.63
CD44-217ENST00000525348 KLHDC7AQ5VTJ3 777 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms