RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 RILPQ96NA2 401 aa8.72□□□□□ -1.01
CSMD1-213ENST00000523488 TUBA1CQ9BQE3 449 aa8.72□□□□□ -1.01
CSMD1-213ENST00000523488 MRM3Q9HC36 420 aaKnown RBP8.72□□□□□ -1.01
CSMD1-213ENST00000523488 SAYSD1Q9NPB0 183 aa8.72□□□□□ -1.01
CSMD1-213ENST00000523488 HACD3Q9P035 362 aa8.72□□□□□ -1.01
CSMD1-213ENST00000523488 ZNF219Q9P2Y4 722 aaPredicted RBP8.72□□□□□ -1.01
CSMD1-213ENST00000523488 PRPF19Q9UMS4 504 aaKnown RBP8.72□□□□□ -1.01
CSMD1-213ENST00000523488 RABGAP1Q9Y3P9 1069 aa8.72□□□□□ -1.01
CSMD1-213ENST00000523488 RNF103O00237 685 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 ATP2A1O14983 1001 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 S100A1P23297 94 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 ITGA7Q13683 1181 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 DPYSQ14117 519 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 CBWD6Q4V339 395 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 CBWD3Q5JTY5 395 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 CBWD5Q5RIA9 395 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 HP1BP3Q5SSJ5 553 aaPredicted RBP8.71□□□□□ -1.01
CSMD1-213ENST00000523488 LPCAT4Q643R3 524 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 IYDQ6PHW0 289 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 TPH2Q8IWU9 490 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 ATP6V0D2Q8N8Y2 350 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 TERB1Q8NA31 727 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 TTC13Q8NBP0 860 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 NEDD1Q8NHV4 660 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 SLC35B2Q8TB61 432 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 GDPD5Q8WTR4 605 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 SLC44A1Q8WWI5 657 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 PYDC1Q8WXC3 89 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 BORCS5Q969J3 196 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 TP53INP1Q96A56 240 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 TMA16Q96EY4 203 aaKnown RBP8.71□□□□□ -1.01
CSMD1-213ENST00000523488 PWWP2AQ96N64 755 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 MROQ9BYG7 248 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 C10orf88Q9H8K7 445 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 VRTNQ9H8Y1 702 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 TBC1D23Q9NUY8 699 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 DNAJC12Q9UKB3 198 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 USP17L12C9JPN9 530 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 USP17L21D6R901 530 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 STAMBPO95630 424 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 FUCA1P04066 466 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 CYP3A4P08684 503 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 CYP19A1P11511 503 aaPredicted RBP8.71□□□□□ -1.01
CSMD1-213ENST00000523488 PHBP35232 272 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 PEX3P56589 373 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 ACAP1Q15027 740 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 TPTE2Q6XPS3 522 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 PRUNE1Q86TP1 453 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 DNAJC10Q8IXB1 793 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 PPM1KQ8N3J5 372 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 CCDC33Q8N5R6 958 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 RTP4Q96DX8 246 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 DCUN1D1Q96GG9 259 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 VCPIP1Q96JH7 1222 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 CLPTM1LQ96KA5 538 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 DRC3Q9H069 523 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 SELENONQ9NZV5 590 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 KLHL3Q9UH77 587 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 PCDHGB4Q9UN71 923 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 PCDHGB5Q9Y5G0 923 aa8.71□□□□□ -1.01
CSMD1-213ENST00000523488 A0A1W2PPM1 405 aa8.71□□□□□ -1.02
CSMD1-213ENST00000523488 SMCO2A6NFE2 343 aa8.71□□□□□ -1.02
CSMD1-213ENST00000523488 POTEMA6NI47 508 aa8.71□□□□□ -1.02
CSMD1-213ENST00000523488 GOLGA8TH3BQL2 631 aa8.71□□□□□ -1.02
CSMD1-213ENST00000523488 CLDN3O15551 220 aa8.71□□□□□ -1.02
CSMD1-213ENST00000523488 GOLGA8HP0CJ92 632 aa8.71□□□□□ -1.02
CSMD1-213ENST00000523488 RBP3P10745 1247 aa8.71□□□□□ -1.02
CSMD1-213ENST00000523488 IL2RBP14784 551 aa8.71□□□□□ -1.02
CSMD1-213ENST00000523488 PRKCHP24723 683 aa8.71□□□□□ -1.02
CSMD1-213ENST00000523488 PEX2P28328 305 aa8.71□□□□□ -1.02
CSMD1-213ENST00000523488 MAGEA12P43365 314 aa8.71□□□□□ -1.02
CSMD1-213ENST00000523488 MRPS5P82675 430 aaKnown RBP8.71□□□□□ -1.02
CSMD1-213ENST00000523488 HIC1Q14526 733 aa8.71□□□□□ -1.02
CSMD1-213ENST00000523488 HERC3Q15034 1050 aa8.71□□□□□ -1.02
CSMD1-213ENST00000523488 CYP2U1Q7Z449 544 aa8.71□□□□□ -1.02
CSMD1-213ENST00000523488 JDP2Q8WYK2 163 aa8.71□□□□□ -1.02
CSMD1-213ENST00000523488 RBM15Q96T37 977 aaKnown RBP eCLIP8.71□□□□□ -1.02
CSMD1-213ENST00000523488 HIPK3Q9H422 1215 aa8.71□□□□□ -1.02
CSMD1-213ENST00000523488 SLAIN2Q9P270 581 aa8.71□□□□□ -1.02
CSMD1-213ENST00000523488 MAD1L1Q9Y6D9 718 aa8.71□□□□□ -1.02
CSMD1-213ENST00000523488 NTSR2O95665 410 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 GNL1P36915 607 aaPredicted RBP8.7□□□□□ -1.02
CSMD1-213ENST00000523488 HIRAP54198 1017 aaPredicted RBP8.7□□□□□ -1.02
CSMD1-213ENST00000523488 IKZF1Q13422 519 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 PDAP1Q13442 181 aaKnown RBP8.7□□□□□ -1.02
CSMD1-213ENST00000523488 ZNF677Q86XU0 584 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 MFSD2AQ8NA29 543 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 CCDC124Q96CT7 223 aaKnown RBP8.7□□□□□ -1.02
CSMD1-213ENST00000523488 GCNAQ96QF7 691 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 TMEM47Q9BQJ4 181 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 PCDH9Q9HC56 1237 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 OLAHQ9NV23 265 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 RIC8BQ9NVN3 520 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 CDH22Q9UJ99 828 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 BTAF1O14981 1849 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 MN1Q10571 1320 aaPredicted RBP8.7□□□□□ -1.02
CSMD1-213ENST00000523488 I3L4J1 428 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 ACOT8O14734 319 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 PRKCGP05129 697 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 MYL2P10916 166 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms