RNA–Protein interactions for RNA: ENST00000515620.5

CLDND1-231, Transcript of claudin domain containing 1, human

TSL 3

Gene CLDND1, Length 663 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLDND1-231	ENST00000515620	FARP1	Q9Y4F1	1045 aa	Predicted RBP	11.22	□□□□□ -0.61
CLDND1-231	ENST00000515620	PCDHB6	Q9Y5E3	794 aa		11.22	□□□□□ -0.61
CLDND1-231	ENST00000515620	RAI2	Q9Y5P3	530 aa		11.22	□□□□□ -0.61
CLDND1-231	ENST00000515620		A0A1B0GTW7	788 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	ZNF840P	A6NDX5	716 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	ATP2C2	O75185	946 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	CILP	O75339	1184 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	DKK1	O94907	266 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	FAM13A	O94988	1023 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	CER1	O95813	267 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	OLFM2	O95897	454 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	ITGB3	P05106	788 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	ANXA13	P27216	316 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	PCSK1	P29120	753 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	GRIK1	P39086	918 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	PSMC1	P62191	440 aa	Known RBP	11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	TFAM	Q00059	246 aa	Known RBP	11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	GAD2	Q05329	585 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	ST3GAL1	Q11201	340 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	CCDC157	Q569K6	752 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	ARSH	Q5FYA8	562 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	KIAA1324	Q6UXG2	1013 aa	Known RBP	11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	DTHD1	Q6ZMT9	781 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	C4orf50	Q6ZRC1	276 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	DENND5B	Q6ZUT9	1274 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	DDX42	Q86XP3	938 aa	Known RBP eCLIP	11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	ETFBKMT	Q8IXQ9	262 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	CHPF	Q8IZ52	775 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	TMEM86A	Q8N2M4	240 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	ZNF843	Q8N446	348 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	KCNV2	Q8TDN2	545 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	RHBDD1	Q8TEB9	315 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	IPO4	Q8TEX9	1081 aa	Known RBP	11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	MYLPF	Q96A32	169 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	CDK5RAP3	Q96JB5	506 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	SPATA17	Q96L03	361 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	ACOX2	Q99424	681 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	CDC6	Q99741	560 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	MIR1-1HG	Q9H1L0	117 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	CD248	Q9HCU0	757 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	TM7SF3	Q9NS93	570 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	DEC1	Q9P2X7	70 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	AGO2	Q9UKV8	859 aa	Known RBP	11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	ODF2L	Q9ULJ1	636 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	SNX9	Q9Y5X1	595 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	RAD54B	Q9Y620	910 aa		11.21	□□□□□ -0.61
CLDND1-231	ENST00000515620	TRIM24	O15164	1050 aa		11.2	□□□□□ -0.62
CLDND1-231	ENST00000515620	FLRT2	O43155	660 aa		11.2	□□□□□ -0.62
CLDND1-231	ENST00000515620	HOXC11	O43248	304 aa	Predicted RBP	11.2	□□□□□ -0.62
CLDND1-231	ENST00000515620	IL18RAP	O95256	599 aa		11.2	□□□□□ -0.62
CLDND1-231	ENST00000515620	OAS1	P00973	400 aa	Known RBP	11.2	□□□□□ -0.62
CLDND1-231	ENST00000515620	ZNF883	P0CG24	379 aa		11.2	□□□□□ -0.62
CLDND1-231	ENST00000515620	MBL2	P11226	248 aa	Predicted RBP	11.2	□□□□□ -0.62
CLDND1-231	ENST00000515620	SCP2	P22307	547 aa		11.2	□□□□□ -0.62
CLDND1-231	ENST00000515620	BDNF	P23560	247 aa		11.2	□□□□□ -0.62
CLDND1-231	ENST00000515620	PRPH	P41219	470 aa		11.2	□□□□□ -0.62
CLDND1-231	ENST00000515620	MATK	P42679	507 aa		11.2	□□□□□ -0.62
CLDND1-231	ENST00000515620	TOB1	P50616	345 aa	Predicted RBP	11.2	□□□□□ -0.62
CLDND1-231	ENST00000515620	WNT7B	P56706	349 aa		11.2	□□□□□ -0.62
CLDND1-231	ENST00000515620	ANO4	Q32M45	955 aa		11.2	□□□□□ -0.62
CLDND1-231	ENST00000515620	PREPL	Q4J6C6	727 aa	Predicted RBP	11.2	□□□□□ -0.62
CLDND1-231	ENST00000515620	HYI	Q5T013	277 aa		11.2	□□□□□ -0.62
CLDND1-231	ENST00000515620	SDE2	Q6IQ49	451 aa		11.2	□□□□□ -0.62
CLDND1-231	ENST00000515620	NUDT18	Q6ZVK8	323 aa		11.2	□□□□□ -0.62
CLDND1-231	ENST00000515620	GPBP1	Q86WP2	473 aa		11.2	□□□□□ -0.62
CLDND1-231	ENST00000515620	PDCD7	Q8N8D1	485 aa	Known RBP	11.2	□□□□□ -0.62
CLDND1-231	ENST00000515620	C1orf127	Q8N9H9	656 aa		11.2	□□□□□ -0.62
CLDND1-231	ENST00000515620	FAM84A	Q96KN4	292 aa		11.2	□□□□□ -0.62
CLDND1-231	ENST00000515620	MRGPRX1	Q96LB2	322 aa		11.2	□□□□□ -0.62
CLDND1-231	ENST00000515620	SYT15	Q9BQS2	421 aa		11.2	□□□□□ -0.62
CLDND1-231	ENST00000515620	TTLL2	Q9BWV7	592 aa		11.2	□□□□□ -0.62
CLDND1-231	ENST00000515620	ZHX3	Q9H4I2	956 aa		11.2	□□□□□ -0.62
CLDND1-231	ENST00000515620	PARVG	Q9HBI0	331 aa		11.2	□□□□□ -0.62
CLDND1-231	ENST00000515620	TBC1D14	Q9P2M4	693 aa		11.2	□□□□□ -0.62
CLDND1-231	ENST00000515620	MAGEC2	Q9UBF1	373 aa	Predicted RBP	11.2	□□□□□ -0.62
CLDND1-231	ENST00000515620	BTBD3	Q9Y2F9	522 aa		11.2	□□□□□ -0.62
CLDND1-231	ENST00000515620		J3QKU1	62 aa		11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	LAD1	O00515	517 aa		11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	TRAK2	O60296	914 aa		11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	KRT19	P08727	400 aa		11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	NCAM1	P13591	858 aa		11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	HLA-E	P13747	358 aa		11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	PLCG1	P19174	1290 aa		11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	CD6	P30203	668 aa		11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	LHX1	P48742	406 aa		11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	BNC1	Q01954	994 aa		11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	CYP27A1	Q02318	531 aa		11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	IFRD2	Q12894	506 aa	Predicted RBP	11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	DHX8	Q14562	1220 aa	Known RBP	11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	HLA-B	Q31612	363 aa		11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	TMEM119	Q4V9L6	283 aa		11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	SCARA3	Q6AZY7	606 aa		11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	GRAMD4	Q6IC98	578 aa		11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	SLFN12L	Q6IEE8	588 aa		11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	FAM171B	Q6P995	826 aa		11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	VSTM1	Q6UX27	236 aa		11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	CRELD2	Q6UXH1	353 aa	Predicted RBP	11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	NT5DC4	Q86YG4	428 aa		11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	BBS7	Q8IWZ6	715 aa		11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	LRRC52	Q8N7C0	313 aa		11.19	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 21 ms