RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 LRRFIP2Q9Y608 721 aaKnown RBP6.03□□□□□ -1.44
NUP54-218ENST00000515460 KMT2EQ8IZD2 1858 aa6.02□□□□□ -1.44
NUP54-218ENST00000515460 GAKO14976 1311 aa6.02□□□□□ -1.45
NUP54-218ENST00000515460 A0A087X1B8 175 aa6.02□□□□□ -1.45
NUP54-218ENST00000515460 GPR75-ASB3A0A0A6YYF3 556 aa6.02□□□□□ -1.45
NUP54-218ENST00000515460 A0A1W2PRX2 142 aa6.02□□□□□ -1.45
NUP54-218ENST00000515460 KPNA6O60684 536 aa6.02□□□□□ -1.45
NUP54-218ENST00000515460 CTNND1O60716 968 aaKnown RBP6.02□□□□□ -1.45
NUP54-218ENST00000515460 PPFIA4O75335 1185 aa6.02□□□□□ -1.45
NUP54-218ENST00000515460 CDC45O75419 566 aa6.02□□□□□ -1.45
NUP54-218ENST00000515460 TPPPO94811 219 aa6.02□□□□□ -1.45
NUP54-218ENST00000515460 ADH4P08319 380 aa6.02□□□□□ -1.45
NUP54-218ENST00000515460 SLC9A1P19634 815 aa6.02□□□□□ -1.45
NUP54-218ENST00000515460 PTX3P26022 381 aaPredicted RBP6.02□□□□□ -1.45
NUP54-218ENST00000515460 CHMLP26374 656 aa6.02□□□□□ -1.45
NUP54-218ENST00000515460 MNAT1P51948 309 aa6.02□□□□□ -1.45
NUP54-218ENST00000515460 MRPL12P52815 198 aaKnown RBP6.02□□□□□ -1.45
NUP54-218ENST00000515460 SMN1Q16637 294 aaKnown RBP6.02□□□□□ -1.45
NUP54-218ENST00000515460 TREML2Q5T2D2 321 aa6.02□□□□□ -1.45
NUP54-218ENST00000515460 GADL1Q6ZQY3 521 aa6.02□□□□□ -1.45
NUP54-218ENST00000515460 CATIPQ7Z7H3 387 aa6.02□□□□□ -1.45
NUP54-218ENST00000515460 MYLK4Q86YV6 388 aaPredicted RBP6.02□□□□□ -1.45
NUP54-218ENST00000515460 MYOCDQ8IZQ8 938 aa6.02□□□□□ -1.45
NUP54-218ENST00000515460 LARP4BQ92615 738 aaKnown RBP6.02□□□□□ -1.45
NUP54-218ENST00000515460 EXOC4Q96A65 974 aa6.02□□□□□ -1.45
NUP54-218ENST00000515460 DYDC2Q96IM9 177 aa6.02□□□□□ -1.45
NUP54-218ENST00000515460 PARK7Q99497 189 aaKnown RBP6.02□□□□□ -1.45
NUP54-218ENST00000515460 ELF4Q99607 663 aaPredicted RBP6.02□□□□□ -1.45
NUP54-218ENST00000515460 BAG1Q99933 345 aaPredicted RBP6.02□□□□□ -1.45
NUP54-218ENST00000515460 SENP6Q9GZR1 1112 aaPredicted RBP6.02□□□□□ -1.45
NUP54-218ENST00000515460 UNC45AQ9H3U1 944 aa6.02□□□□□ -1.45
NUP54-218ENST00000515460 OXSMQ9NWU1 459 aa6.02□□□□□ -1.45
NUP54-218ENST00000515460 TMOD4Q9NZQ9 345 aa6.02□□□□□ -1.45
NUP54-218ENST00000515460 ATP11BQ9Y2G3 1177 aa6.02□□□□□ -1.45
NUP54-218ENST00000515460 SLC45A1Q9Y2W3 748 aa6.02□□□□□ -1.45
NUP54-218ENST00000515460 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.02□□□□□ -1.459e-6■□□□□ 11.3
NUP54-218ENST00000515460 MAST2Q6P0Q8 1798 aa6.02□□□□□ -1.45
NUP54-218ENST00000515460 PIEZO2Q9H5I5 2752 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 MYH3P11055 1940 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 CNOT1A5YKK6 2376 aaKnown RBP6.01□□□□□ -1.45
NUP54-218ENST00000515460 A0A087WUV0 522 aaPredicted RBP6.01□□□□□ -1.45
NUP54-218ENST00000515460 BICDL2A1A5D9 508 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 TRIM43BA6NCK2 446 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 TRIM75PA6NK02 468 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 GOLGA8BA8MQT2 603 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 PDLIM1O00151 329 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 ZSCAN9O15535 394 aaPredicted RBP6.01□□□□□ -1.45
NUP54-218ENST00000515460 DAPK3O43293 454 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 TIMM44O43615 452 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 SH3BP5O60239 455 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 F2P00734 622 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 UBTFL1P0CB47 393 aaPredicted RBP6.01□□□□□ -1.45
NUP54-218ENST00000515460 HARSP12081 509 aaKnown RBP6.01□□□□□ -1.45
NUP54-218ENST00000515460 POU3F2P20265 443 aaPredicted RBP6.01□□□□□ -1.45
NUP54-218ENST00000515460 CD40P25942 277 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 BTDP43251 543 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 MECOMQ03112 1051 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 CCDC15Q0P6D6 951 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 TFCP2Q12800 502 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 PICALMQ13492 652 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 PRPF4BQ13523 1007 aaKnown RBP6.01□□□□□ -1.45
NUP54-218ENST00000515460 C16orf87Q6PH81 154 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 CCDC80Q76M96 950 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 LRRTM3Q86VH5 581 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 AHI1Q8N157 1196 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 PPM1KQ8N3J5 372 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 ANKRD13CQ8N6S4 541 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 AMER2Q8N7J2 671 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 NKD2Q969F2 451 aaPredicted RBP6.01□□□□□ -1.45
NUP54-218ENST00000515460 TRIM43Q96BQ3 446 aaPredicted RBP6.01□□□□□ -1.45
NUP54-218ENST00000515460 NSUN4Q96CB9 384 aaKnown RBP6.01□□□□□ -1.45
NUP54-218ENST00000515460 CLIP3Q96DZ5 547 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 RPL10LQ96L21 214 aaKnown RBP6.01□□□□□ -1.45
NUP54-218ENST00000515460 WDR92Q96MX6 357 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 MEIS3Q99687 375 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 ZSCAN16Q9H4T2 348 aaPredicted RBP6.01□□□□□ -1.45
NUP54-218ENST00000515460 RETREG1Q9H6L5 497 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 METTL14Q9HCE5 456 aaKnown RBP6.01□□□□□ -1.45
NUP54-218ENST00000515460 PARPBPQ9NWS1 579 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 AURKAIP1Q9NWT8 199 aaPredicted RBP6.01□□□□□ -1.45
NUP54-218ENST00000515460 DLL3Q9NYJ7 618 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 HMG20BQ9P0W2 317 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 CEP72Q9P209 647 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 CLIP2Q9UDT6 1046 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 RCAN3Q9UKA8 241 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 GJD2Q9UKL4 321 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 AGTPBP1Q9UPW5 1226 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 PLAAQ9Y263 795 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 RBM8AQ9Y5S9 174 aaKnown RBP6.01□□□□□ -1.45
NUP54-218ENST00000515460 MTCH2Q9Y6C9 303 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 RFX7Q2KHR2 1363 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 COL4A3Q01955 1670 aa6.01□□□□□ -1.45
NUP54-218ENST00000515460 MROH7-TTC4A0A0A0MT08 1334 aa6□□□□□ -1.45
NUP54-218ENST00000515460 MGAMO43451 1857 aa6□□□□□ -1.45
NUP54-218ENST00000515460 DOCK3Q8IZD9 2030 aa6□□□□□ -1.45
NUP54-218ENST00000515460 TNPO2O14787 897 aaKnown RBP6□□□□□ -1.45
NUP54-218ENST00000515460 E2F6O75461 281 aa6□□□□□ -1.45
NUP54-218ENST00000515460 MAKP20794 623 aa6□□□□□ -1.45
NUP54-218ENST00000515460 DDIT3P35638 169 aa6□□□□□ -1.45
NUP54-218ENST00000515460 NBL1P41271 181 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms