RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 USP4Q13107 963 aa12.15□□□□□ -0.46
VCAN-212ENST00000515397 ZNF268Q14587 947 aaPredicted RBP12.15□□□□□ -0.46
VCAN-212ENST00000515397 HSP90AA4PQ58FG1 418 aa12.15□□□□□ -0.46
VCAN-212ENST00000515397 HECTD3Q5T447 861 aa12.15□□□□□ -0.46
VCAN-212ENST00000515397 ASCL5Q7RTU5 278 aa12.15□□□□□ -0.46
VCAN-212ENST00000515397 TRIM59Q8IWR1 403 aa12.15□□□□□ -0.46
VCAN-212ENST00000515397 LMO3Q8TAP4 145 aa12.15□□□□□ -0.46
VCAN-212ENST00000515397 UBA3Q8TBC4 463 aa12.15□□□□□ -0.46
VCAN-212ENST00000515397 OSCP1Q8WVF1 389 aa12.15□□□□□ -0.46
VCAN-212ENST00000515397 CEP295NLQ96MC4 621 aa12.15□□□□□ -0.46
VCAN-212ENST00000515397 CRACR2AQ9BSW2 395 aa12.15□□□□□ -0.46
VCAN-212ENST00000515397 DUSP16Q9BY84 665 aa12.15□□□□□ -0.46
VCAN-212ENST00000515397 ECT2Q9H8V3 914 aa12.15□□□□□ -0.46
VCAN-212ENST00000515397 KIF9Q9HAQ2 790 aa12.15□□□□□ -0.46
VCAN-212ENST00000515397 NMUR1Q9HB89 426 aa12.15□□□□□ -0.46
VCAN-212ENST00000515397 ZMYM5Q9UJ78 669 aa12.15□□□□□ -0.46
VCAN-212ENST00000515397 ARHGAP26Q9UNA1 814 aa12.15□□□□□ -0.46
VCAN-212ENST00000515397 PCDHB4Q9Y5E5 795 aa12.15□□□□□ -0.46
VCAN-212ENST00000515397 ATG2BQ96BY7 2078 aa12.15□□□□□ -0.46
VCAN-212ENST00000515397 GREB1Q4ZG55 1949 aa12.15□□□□□ -0.46
VCAN-212ENST00000515397 DENND4CQ5VZ89 1909 aa12.14□□□□□ -0.47
VCAN-212ENST00000515397 ANAPC1Q9H1A4 1944 aa12.14□□□□□ -0.47
VCAN-212ENST00000515397 A0A1W2PQH9 124 aa12.14□□□□□ -0.47
VCAN-212ENST00000515397 SOBPA7XYQ1 873 aa12.14□□□□□ -0.47
VCAN-212ENST00000515397 CD19P15391 556 aa12.14□□□□□ -0.47
VCAN-212ENST00000515397 GJA4P35212 333 aa12.14□□□□□ -0.47
VCAN-212ENST00000515397 PPP1R2P41236 205 aa12.14□□□□□ -0.47
VCAN-212ENST00000515397 APBA1Q02410 837 aa12.14□□□□□ -0.47
VCAN-212ENST00000515397 EML3Q32P44 896 aa12.14□□□□□ -0.47
VCAN-212ENST00000515397 PKN3Q6P5Z2 889 aa12.14□□□□□ -0.47
VCAN-212ENST00000515397 RALGPS2Q86X27 583 aaPredicted RBP12.14□□□□□ -0.47
VCAN-212ENST00000515397 IRF2BP1Q8IU81 584 aa12.14□□□□□ -0.47
VCAN-212ENST00000515397 PPM1KQ8N3J5 372 aa12.14□□□□□ -0.47
VCAN-212ENST00000515397 TRIML1Q8N9V2 468 aa12.14□□□□□ -0.47
VCAN-212ENST00000515397 EHBP1Q8NDI1 1231 aa12.14□□□□□ -0.47
VCAN-212ENST00000515397 GPT2Q8TD30 523 aa12.14□□□□□ -0.47
VCAN-212ENST00000515397 EHD2Q9NZN4 543 aa12.14□□□□□ -0.47
VCAN-212ENST00000515397 RWDD2AQ9UIY3 292 aa12.14□□□□□ -0.47
VCAN-212ENST00000515397 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.14□□□□□ -0.47
VCAN-212ENST00000515397 VPS13AQ96RL7 3174 aa12.14□□□□□ -0.47
VCAN-212ENST00000515397 USP34Q70CQ2 3546 aa12.13□□□□□ -0.47
VCAN-212ENST00000515397 OBSL1O75147 1896 aa12.13□□□□□ -0.47
VCAN-212ENST00000515397 PIK3R2O00459 728 aa12.13□□□□□ -0.47
VCAN-212ENST00000515397 EGFP01133 1207 aa12.13□□□□□ -0.47
VCAN-212ENST00000515397 AFPP02771 609 aaKnown RBP12.13□□□□□ -0.47
VCAN-212ENST00000515397 ZDHHC11BP0C7U3 371 aa12.13□□□□□ -0.47
VCAN-212ENST00000515397 TRIM21P19474 475 aaKnown RBP12.13□□□□□ -0.47
VCAN-212ENST00000515397 PPP3CCP48454 512 aa12.13□□□□□ -0.47
VCAN-212ENST00000515397 SLC7A9P82251 487 aa12.13□□□□□ -0.47
VCAN-212ENST00000515397 SATB1Q01826 763 aa12.13□□□□□ -0.47
VCAN-212ENST00000515397 DMWDQ09019 674 aa12.13□□□□□ -0.47
VCAN-212ENST00000515397 PDGFRLQ15198 375 aa12.13□□□□□ -0.47
VCAN-212ENST00000515397 GOLGA7BQ2TAP0 167 aa12.13□□□□□ -0.47
VCAN-212ENST00000515397 DPCR1Q3MIW9 517 aa12.13□□□□□ -0.47
VCAN-212ENST00000515397 FSTL4Q6MZW2 842 aa12.13□□□□□ -0.47
VCAN-212ENST00000515397 GJB7Q6PEY0 223 aa12.13□□□□□ -0.47
VCAN-212ENST00000515397 TMEM270Q6UE05 265 aa12.13□□□□□ -0.47
VCAN-212ENST00000515397 SCD5Q86SK9 330 aa12.13□□□□□ -0.47
VCAN-212ENST00000515397 TTC30AQ86WT1 665 aa12.13□□□□□ -0.47
VCAN-212ENST00000515397 UBR7Q8N806 425 aa12.13□□□□□ -0.47
VCAN-212ENST00000515397 TFAP2BQ92481 460 aa12.13□□□□□ -0.47
VCAN-212ENST00000515397 ZFRQ96KR1 1074 aaKnown RBP12.13□□□□□ -0.47
VCAN-212ENST00000515397 CNOT6LQ96LI5 555 aaKnown RBP12.13□□□□□ -0.47
VCAN-212ENST00000515397 NT5C1BQ96P26 610 aa12.13□□□□□ -0.47
VCAN-212ENST00000515397 NACA2Q9H009 215 aa12.13□□□□□ -0.47
VCAN-212ENST00000515397 IRF2BPLQ9H1B7 796 aa12.13□□□□□ -0.47
VCAN-212ENST00000515397 NUP62CLQ9H1M0 184 aa12.13□□□□□ -0.47
VCAN-212ENST00000515397 CHRDQ9H2X0 955 aa12.13□□□□□ -0.47
VCAN-212ENST00000515397 NUP210Q8TEM1 1887 aaPredicted RBP12.12□□□□□ -0.47
VCAN-212ENST00000515397 MYH10P35580 1976 aa12.12□□□□□ -0.47
VCAN-212ENST00000515397 COL4A2P08572 1712 aa12.12□□□□□ -0.47
VCAN-212ENST00000515397 FAM92AA1XBS5 289 aa12.12□□□□□ -0.47
VCAN-212ENST00000515397 TLR5O60602 858 aa12.12□□□□□ -0.47
VCAN-212ENST00000515397 GFRA3O60609 400 aa12.12□□□□□ -0.47
VCAN-212ENST00000515397 GNA14O95837 355 aa12.12□□□□□ -0.47
VCAN-212ENST00000515397 OLFM2O95897 454 aa12.12□□□□□ -0.47
VCAN-212ENST00000515397 RARGP13631 454 aa12.12□□□□□ -0.47
VCAN-212ENST00000515397 BRD2P25440 801 aaKnown RBP12.12□□□□□ -0.47
VCAN-212ENST00000515397 NBL1P41271 181 aa12.12□□□□□ -0.47
VCAN-212ENST00000515397 RPS9P46781 194 aaKnown RBP12.12□□□□□ -0.47
VCAN-212ENST00000515397 SLC6A11P48066 632 aa12.12□□□□□ -0.47
VCAN-212ENST00000515397 KIF11P52732 1056 aa12.12□□□□□ -0.47
VCAN-212ENST00000515397 PDE4CQ08493 712 aa12.12□□□□□ -0.47
VCAN-212ENST00000515397 MESP2Q0VG99 397 aa12.12□□□□□ -0.47
VCAN-212ENST00000515397 TPD52L1Q16890 204 aaPredicted RBP12.12□□□□□ -0.47
VCAN-212ENST00000515397 HEATR6Q6AI08 1181 aaKnown RBP12.12□□□□□ -0.47
VCAN-212ENST00000515397 PIGZQ86VD9 579 aa12.12□□□□□ -0.47
VCAN-212ENST00000515397 SFTPA1Q8IWL2 248 aa12.12□□□□□ -0.47
VCAN-212ENST00000515397 ADGRG2Q8IZP9 1017 aa12.12□□□□□ -0.47
VCAN-212ENST00000515397 PDZD8Q8NEN9 1154 aa12.12□□□□□ -0.47
VCAN-212ENST00000515397 ATP2A3Q93084 1043 aa12.12□□□□□ -0.47
VCAN-212ENST00000515397 KREMEN1Q96MU8 473 aa12.12□□□□□ -0.47
VCAN-212ENST00000515397 IPO9Q96P70 1041 aaKnown RBP12.12□□□□□ -0.47
VCAN-212ENST00000515397 ZSWIM1Q9BR11 485 aa12.12□□□□□ -0.47
VCAN-212ENST00000515397 INTS2Q9H0H0 1204 aaKnown RBP12.12□□□□□ -0.47
VCAN-212ENST00000515397 FBXO44Q9H4M3 255 aa12.12□□□□□ -0.47
VCAN-212ENST00000515397 UBE2TQ9NPD8 197 aaPredicted RBP12.12□□□□□ -0.47
VCAN-212ENST00000515397 TSPAN16Q9UKR8 245 aa12.12□□□□□ -0.47
VCAN-212ENST00000515397 SCML2Q9UQR0 700 aa12.12□□□□□ -0.47
VCAN-212ENST00000515397 SDK1Q7Z5N4 2213 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms