RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 TMEM209Q96SK2 561 aa16.76■□□□□ 0.27
NUP54-214ENST00000514307 RAD9AQ99638 391 aa16.76■□□□□ 0.27
NUP54-214ENST00000514307 FBXO44Q9H4M3 255 aa16.76■□□□□ 0.27
NUP54-214ENST00000514307 POPDC2Q9HBU9 364 aa16.76■□□□□ 0.27
NUP54-214ENST00000514307 CHST7Q9NS84 486 aa16.76■□□□□ 0.27
NUP54-214ENST00000514307 TMLHEQ9NVH6 421 aa16.76■□□□□ 0.27
NUP54-214ENST00000514307 STAP1Q9ULZ2 295 aa16.76■□□□□ 0.27
NUP54-214ENST00000514307 MKI67P46013 3256 aaKnown RBP16.76■□□□□ 0.27
NUP54-214ENST00000514307 PDE4DIPQ5VU43 2346 aa16.75■□□□□ 0.27
NUP54-214ENST00000514307 GRAP2O75791 330 aa16.75■□□□□ 0.27
NUP54-214ENST00000514307 GJB5O95377 273 aa16.75■□□□□ 0.27
NUP54-214ENST00000514307 TRUB2O95900 331 aaKnown RBP16.75■□□□□ 0.27
NUP54-214ENST00000514307 EFEMP2O95967 443 aa16.75■□□□□ 0.27
NUP54-214ENST00000514307 F9P00740 461 aa16.75■□□□□ 0.27
NUP54-214ENST00000514307 SOD2P04179 222 aa16.75■□□□□ 0.27
NUP54-214ENST00000514307 TUFMP49411 452 aaKnown RBP16.75■□□□□ 0.27
NUP54-214ENST00000514307 ARPP19P56211 112 aa16.75■□□□□ 0.27
NUP54-214ENST00000514307 TAS2R40P59535 323 aa16.75■□□□□ 0.27
NUP54-214ENST00000514307 HTRA4P83105 476 aaPredicted RBP16.75■□□□□ 0.27
NUP54-214ENST00000514307 CREMQ03060 361 aa16.75■□□□□ 0.27
NUP54-214ENST00000514307 ZNF211Q13398 564 aaPredicted RBP16.75■□□□□ 0.27
NUP54-214ENST00000514307 SMC1AQ14683 1233 aaKnown RBP16.75■□□□□ 0.27
NUP54-214ENST00000514307 SLC25A52Q3SY17 297 aa16.75■□□□□ 0.27
NUP54-214ENST00000514307 TMEM240Q5SV17 173 aa16.75■□□□□ 0.27
NUP54-214ENST00000514307 BEND5Q7L4P6 421 aa16.75■□□□□ 0.27
NUP54-214ENST00000514307 STRADAQ7RTN6 431 aa16.75■□□□□ 0.27
NUP54-214ENST00000514307 SLC13A5Q86YT5 568 aaPredicted RBP16.75■□□□□ 0.27
NUP54-214ENST00000514307 CCDC50Q8IVM0 306 aa16.75■□□□□ 0.27
NUP54-214ENST00000514307 ARHGAP18Q8N392 663 aa16.75■□□□□ 0.27
NUP54-214ENST00000514307 KCTD6Q8NC69 237 aa16.75■□□□□ 0.27
NUP54-214ENST00000514307 ZMIZ2Q8NF64 920 aa16.75■□□□□ 0.27
NUP54-214ENST00000514307 FAM149B1Q96BN6 582 aa16.75■□□□□ 0.27
NUP54-214ENST00000514307 SLC9A7Q96T83 725 aa16.75■□□□□ 0.27
NUP54-214ENST00000514307 TBCBQ99426 244 aa16.75■□□□□ 0.27
NUP54-214ENST00000514307 ULBP1Q9BZM6 244 aa16.75■□□□□ 0.27
NUP54-214ENST00000514307 ABI2Q9NYB9 513 aaPredicted RBP16.75■□□□□ 0.27
NUP54-214ENST00000514307 FEZ2Q9UHY8 353 aaPredicted RBP16.75■□□□□ 0.27
NUP54-214ENST00000514307 MAFFQ9ULX9 164 aa16.75■□□□□ 0.27
NUP54-214ENST00000514307 USP18Q9UMW8 372 aa16.75■□□□□ 0.27
NUP54-214ENST00000514307 EFR3BQ9Y2G0 817 aa16.75■□□□□ 0.27
NUP54-214ENST00000514307 TTC3P53804 2025 aa16.75■□□□□ 0.27
NUP54-214ENST00000514307 HHLA1C9JL84 531 aa16.74■□□□□ 0.27
NUP54-214ENST00000514307 FSCN2O14926 492 aa16.74■□□□□ 0.27
NUP54-214ENST00000514307 LRCH4O75427 683 aa16.74■□□□□ 0.27
NUP54-214ENST00000514307 CYP2F1P24903 491 aa16.74■□□□□ 0.27
NUP54-214ENST00000514307 MIPP30301 263 aa16.74■□□□□ 0.27
NUP54-214ENST00000514307 FLT3P36888 993 aa16.74■□□□□ 0.27
NUP54-214ENST00000514307 NDUFV1P49821 464 aa16.74■□□□□ 0.27
NUP54-214ENST00000514307 DAOAP59103 153 aa16.74■□□□□ 0.27
NUP54-214ENST00000514307 ZNF252P-AS1Q0IIN9 211 aa16.74■□□□□ 0.27
NUP54-214ENST00000514307 TAF5Q15542 800 aa16.74■□□□□ 0.27
NUP54-214ENST00000514307 RTP2Q5QGT7 225 aa16.74■□□□□ 0.27
NUP54-214ENST00000514307 SLC8B1Q6J4K2 584 aa16.74■□□□□ 0.27
NUP54-214ENST00000514307 TAS1R1Q7RTX1 841 aa16.74■□□□□ 0.27
NUP54-214ENST00000514307 MAATS1Q7Z4T9 603 aa16.74■□□□□ 0.27
NUP54-214ENST00000514307 DEFB106AQ8N104 65 aa16.74■□□□□ 0.27
NUP54-214ENST00000514307 NUP93Q8N1F7 819 aa16.74■□□□□ 0.27
NUP54-214ENST00000514307 FBXO22Q8NEZ5 403 aa16.74■□□□□ 0.27
NUP54-214ENST00000514307 CENPIQ92674 756 aaPredicted RBP16.74■□□□□ 0.27
NUP54-214ENST00000514307 DPF3Q92784 378 aa16.74■□□□□ 0.27
NUP54-214ENST00000514307 RC3H2Q9HBD1 1191 aaKnown RBP16.74■□□□□ 0.27
NUP54-214ENST00000514307 EHD2Q9NZN4 543 aa16.74■□□□□ 0.27
NUP54-214ENST00000514307 HSFX1Q9UBD0 423 aa16.74■□□□□ 0.27
NUP54-214ENST00000514307 MTRRQ9UBK8 725 aa16.74■□□□□ 0.27
NUP54-214ENST00000514307 MRPL42Q9Y6G3 142 aaKnown RBP16.74■□□□□ 0.27
NUP54-214ENST00000514307 USP3Q9Y6I4 520 aa16.74■□□□□ 0.27
NUP54-214ENST00000514307 TARSL2A2RTX5 802 aaKnown RBP16.73■□□□□ 0.27
NUP54-214ENST00000514307 DAB1O75553 588 aa16.73■□□□□ 0.27
NUP54-214ENST00000514307 TJP3O95049 919 aa16.73■□□□□ 0.27
NUP54-214ENST00000514307 RTN3O95197 1032 aaPredicted RBP16.73■□□□□ 0.27
NUP54-214ENST00000514307 OR4Q2P0C623 313 aa16.73■□□□□ 0.27
NUP54-214ENST00000514307 USP17L7P0C7H9 530 aa16.73■□□□□ 0.27
NUP54-214ENST00000514307 GBP1P32455 592 aa16.73■□□□□ 0.27
NUP54-214ENST00000514307 PBX3P40426 434 aa16.73■□□□□ 0.27
NUP54-214ENST00000514307 GLUD2P49448 558 aa16.73■□□□□ 0.27
NUP54-214ENST00000514307 DSG1Q02413 1049 aa16.73■□□□□ 0.27
NUP54-214ENST00000514307 ADCY1Q08828 1119 aa16.73■□□□□ 0.27
NUP54-214ENST00000514307 PDK2Q15119 407 aa16.73■□□□□ 0.27
NUP54-214ENST00000514307 PSMD5Q16401 504 aa16.73■□□□□ 0.27
NUP54-214ENST00000514307 CCDC142Q17RM4 750 aa16.73■□□□□ 0.27
NUP54-214ENST00000514307 DCAF6Q58WW2 860 aa16.73■□□□□ 0.27
NUP54-214ENST00000514307 DCAF12L1Q5VU92 463 aa16.73■□□□□ 0.27
NUP54-214ENST00000514307 TPGS2Q68CL5 300 aa16.73■□□□□ 0.27
NUP54-214ENST00000514307 SCYL2Q6P3W7 929 aa16.73■□□□□ 0.27
NUP54-214ENST00000514307 CMASQ8NFW8 434 aaPredicted RBP16.73■□□□□ 0.27
NUP54-214ENST00000514307 FAM172AQ8WUF8 416 aa16.73■□□□□ 0.27
NUP54-214ENST00000514307 TEKT4Q8WW24 435 aa16.73■□□□□ 0.27
NUP54-214ENST00000514307 SPATA17Q96L03 361 aa16.73■□□□□ 0.27
NUP54-214ENST00000514307 CFAP57Q96MR6 1250 aa16.73■□□□□ 0.27
NUP54-214ENST00000514307 SLC2A13Q96QE2 648 aa16.73■□□□□ 0.27
NUP54-214ENST00000514307 HERC2P3Q9BVR0 1158 aa16.73■□□□□ 0.27
NUP54-214ENST00000514307 MAK16Q9BXY0 300 aaKnown RBP16.73■□□□□ 0.27
NUP54-214ENST00000514307 NGRNQ9NPE2 291 aaKnown RBP16.73■□□□□ 0.27
NUP54-214ENST00000514307 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.73■□□□□ 0.27
NUP54-214ENST00000514307 HCSTQ9UBK5 93 aa16.73■□□□□ 0.27
NUP54-214ENST00000514307 PCSK1NQ9UHG2 260 aa16.73■□□□□ 0.27
NUP54-214ENST00000514307 NR2E3Q9Y5X4 410 aa16.73■□□□□ 0.27
NUP54-214ENST00000514307 ENDOD1O94919 500 aa16.72■□□□□ 0.27
NUP54-214ENST00000514307 LTFP02788 710 aa16.72■□□□□ 0.27
NUP54-214ENST00000514307 KRT1P04264 644 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms