RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 RNF220Q5VTB9 566 aa7.76□□□□□ -1.17
CLIP1-205ENST00000514271 DENND2CQ68D51 928 aa7.76□□□□□ -1.17
CLIP1-205ENST00000514271 SLC30A9Q6PML9 568 aa7.76□□□□□ -1.17
CLIP1-205ENST00000514271 CXCL17Q6UXB2 119 aa7.76□□□□□ -1.17
CLIP1-205ENST00000514271 ARHGEF19Q8IW93 802 aa7.76□□□□□ -1.17
CLIP1-205ENST00000514271 LINC01465Q8N7H1 131 aa7.76□□□□□ -1.17
CLIP1-205ENST00000514271 KLHL23Q8NBE8 558 aa7.76□□□□□ -1.17
CLIP1-205ENST00000514271 TBC1D31Q96DN5 1066 aa7.76□□□□□ -1.17
CLIP1-205ENST00000514271 ZBTB10Q96DT7 871 aa7.76□□□□□ -1.17
CLIP1-205ENST00000514271 SCLT1Q96NL6 688 aa7.76□□□□□ -1.17
CLIP1-205ENST00000514271 PCYT2Q99447 389 aa7.76□□□□□ -1.17
CLIP1-205ENST00000514271 NAP1L3Q99457 506 aaPredicted RBP7.76□□□□□ -1.17
CLIP1-205ENST00000514271 PPCSQ9HAB8 311 aa7.76□□□□□ -1.17
CLIP1-205ENST00000514271 IFT122Q9HBG6 1241 aa7.76□□□□□ -1.17
CLIP1-205ENST00000514271 SEL1LQ9UBV2 794 aa7.76□□□□□ -1.17
CLIP1-205ENST00000514271 SUN2Q9UH99 717 aa7.76□□□□□ -1.17
CLIP1-205ENST00000514271 CIDEBQ9UHD4 219 aa7.76□□□□□ -1.17
CLIP1-205ENST00000514271 TRPV2Q9Y5S1 764 aa7.76□□□□□ -1.17
CLIP1-205ENST00000514271 RPSAP08865 295 aaKnown RBP7.76□□□□□ -1.17
CLIP1-205ENST00000514271 TSHRP16473 764 aa7.76□□□□□ -1.17
CLIP1-205ENST00000514271 TXKP42681 527 aa7.76□□□□□ -1.17
CLIP1-205ENST00000514271 MAGEA6P43360 314 aa7.76□□□□□ -1.17
CLIP1-205ENST00000514271 PHEXP78562 749 aa7.76□□□□□ -1.17
CLIP1-205ENST00000514271 BEX3Q00994 111 aa7.76□□□□□ -1.17
CLIP1-205ENST00000514271 RNASEH2BQ5TBB1 312 aaKnown RBP7.76□□□□□ -1.17
CLIP1-205ENST00000514271 SWSAP1Q6NVH7 229 aa7.76□□□□□ -1.17
CLIP1-205ENST00000514271 PDSS2Q86YH6 399 aa7.76□□□□□ -1.17
CLIP1-205ENST00000514271 CCDC60Q8IWA6 550 aaPredicted RBP7.76□□□□□ -1.17
CLIP1-205ENST00000514271 SLC7A3Q8WY07 619 aa7.76□□□□□ -1.17
CLIP1-205ENST00000514271 LXNQ9BS40 222 aa7.76□□□□□ -1.17
CLIP1-205ENST00000514271 PDLIM7Q9NR12 457 aa7.76□□□□□ -1.17
CLIP1-205ENST00000514271 ALOX15BO15296 676 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 PEX1O43933 1283 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 CXCL10P02778 98 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 CPA3P15088 417 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 NR2F2P24468 414 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 RDXP35241 583 aaKnown RBP7.75□□□□□ -1.17
CLIP1-205ENST00000514271 MAGEA3P43357 314 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 SOX10P56693 466 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 RINT1Q6NUQ1 792 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 MON1BQ7L1V2 547 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 CPLX4Q7Z7G2 160 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 GLYCTKQ8IVS8 523 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 CYP2W1Q8TAV3 490 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 NLRP4Q96MN2 994 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 PRICKLE1Q96MT3 831 aaPredicted RBP7.75□□□□□ -1.17
CLIP1-205ENST00000514271 ZNF385DQ9H6B1 395 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 DHX33Q9H6R0 707 aaKnown RBP7.75□□□□□ -1.17
CLIP1-205ENST00000514271 TXLNGQ9NUQ3 528 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 TMEM39AQ9NV64 488 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 ARMCX3Q9UH62 379 aaPredicted RBP7.75□□□□□ -1.17
CLIP1-205ENST00000514271 RABGEF1Q9UJ41 708 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 R3HDM2Q9Y2K5 976 aaKnown RBP7.75□□□□□ -1.17
CLIP1-205ENST00000514271 SSUH2Q9Y2M2 353 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 USH1CQ9Y6N9 552 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 TMEM265A0A087WTH1 108 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 A8MXQ7 604 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 TIMM44O43615 452 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 COMTP21964 271 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 YWHABP31946 246 aaKnown RBP7.75□□□□□ -1.17
CLIP1-205ENST00000514271 CCDC92Q53HC0 331 aaPredicted RBP7.75□□□□□ -1.17
CLIP1-205ENST00000514271 PRPF38BQ5VTL8 546 aaKnown RBP7.75□□□□□ -1.17
CLIP1-205ENST00000514271 DYMQ7RTS9 669 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 NPAS4Q8IUM7 802 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 LSM14AQ8ND56 463 aaKnown RBP7.75□□□□□ -1.17
CLIP1-205ENST00000514271 VPS37AQ8NEZ2 397 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 PHOSPHO2Q8TCD6 241 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 SNX29Q8TEQ0 813 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 RETREG1Q9H6L5 497 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 LUC7LQ9NQ29 371 aaKnown RBP7.75□□□□□ -1.17
CLIP1-205ENST00000514271 CYP26B1Q9NR63 512 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 CHST12Q9NRB3 414 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 C1orf112Q9NSG2 853 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 BMP2KQ9NSY1 1161 aaPredicted RBP7.75□□□□□ -1.17
CLIP1-205ENST00000514271 GCNT4Q9P109 453 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 USTQ9Y2C2 406 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 SNX24Q9Y343 169 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 RSPH10B2B2RC85 870 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 DENRO43583 198 aaKnown RBP7.75□□□□□ -1.17
CLIP1-205ENST00000514271 STBD1O95210 358 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 LMNAP02545 664 aaKnown RBP7.75□□□□□ -1.17
CLIP1-205ENST00000514271 RSPH10BP0C881 870 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 GAP43P17677 238 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 EPHB2P29323 1055 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 GPC3P51654 580 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 ZNF132P52740 706 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 MRPS6P82932 125 aaKnown RBP7.75□□□□□ -1.17
CLIP1-205ENST00000514271 DRAP1Q14919 205 aaPredicted RBP7.75□□□□□ -1.17
CLIP1-205ENST00000514271 KYAT1Q16773 422 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 LRRC26Q2I0M4 334 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 TRIM71Q2Q1W2 868 aaKnown RBP7.75□□□□□ -1.17
CLIP1-205ENST00000514271 TRIM60Q495X7 471 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 PLA2G4FQ68DD2 849 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 DAAM2Q86T65 1068 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 CEP57Q86XR8 500 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 ARHGEF2Q92974 986 aaKnown RBP7.75□□□□□ -1.17
CLIP1-205ENST00000514271 GJA10Q969M2 543 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 PLEKHG4BQ96PX9 1271 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 TSG101Q99816 390 aa7.75□□□□□ -1.17
CLIP1-205ENST00000514271 MAK16Q9BXY0 300 aaKnown RBP7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms