RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 SLC2A14Q8TDB8 520 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 ZSWIM3Q96MP5 696 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 FOXQ1Q9C009 403 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 BRD9Q9H8M2 597 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 CNTN3Q9P232 1028 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 DNMT3BQ9UBC3 853 aaKnown RBP8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 FAM50BQ9Y247 325 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 CELSR3Q9NYQ7 3312 aa8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 BNIP3LO60238 219 aa8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 XYLBO75191 536 aa8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 LCP1P13796 627 aa8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 CEBPBP17676 345 aa8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 EPHB3P54753 998 aa8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 WHAMMP3Q1A5X7 153 aa8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 ZNF658Q5TYW1 1059 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 DNAJB7Q7Z6W7 309 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 MYLPFQ96A32 169 aa8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 EPAS1Q99814 870 aa8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 HEBP1Q9NRV9 189 aa8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 GTSE1Q9NYZ3 720 aa8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 CEP72Q9P209 647 aa8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 NFE2L3Q9Y4A8 694 aa8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 YIPF1Q9Y548 306 aa8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 ATP8B1O43520 1251 aa8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 CREB3O43889 395 aa8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 N4BP1O75113 896 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 IMPDH2P12268 514 aa8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 ANXA13P27216 316 aa8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 GDI1P31150 447 aa8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 KRT9P35527 623 aa8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 CCR2P41597 374 aa8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 FKBP3Q00688 224 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 ANO6Q4KMQ2 910 aa8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 C11orf57Q6ZUT1 292 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 ARL14EPQ8N8R7 260 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 ENGASEQ8NFI3 743 aa8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 ATXN2LQ8WWM7 1075 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 SPOCK3Q9BQ16 436 aa8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 TRIM7Q9C029 511 aa8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 SUN2Q9UH99 717 aa8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 INSL5Q9Y5Q6 135 aa8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 NUMBLQ9Y6R0 609 aa8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 MYH10P35580 1976 aa8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 LAMA1P25391 3075 aa8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 CABIN1Q9Y6J0 2220 aa8.31□□□□□ -1.08
LIMCH1-219ENST00000514096 MOCS2O96007 188 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 GARTP22102 1010 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 PROZP22891 400 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 GGCXP38435 758 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 WASP42768 502 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 SYCP1Q15431 976 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 ZCCHC8Q6NZY4 707 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 TPGS1Q6ZTW0 290 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 SMRP1Q8NCR6 262 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 EDEM1Q92611 657 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 SEMA4DQ92854 862 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 CNOT6LQ96LI5 555 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 GCNAQ96QF7 691 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 ASB7Q9H672 318 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 KCNK12Q9HB15 430 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 UBE2TQ9NPD8 197 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 KRT82Q9NSB4 513 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 BAIAP2L1Q9UHR4 511 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 KNTC1P50748 2209 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 MTMR11A4FU01 709 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 RHOBTB3O94955 611 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 HNRNPCP07910 306 aaKnown RBP eCLIP8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 KPNA1P52294 538 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 CACNA2D1P54289 1103 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 VCPP55072 806 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 NAB2Q15742 525 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 CEP128Q6ZU80 1094 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 ZSCAN18Q8TBC5 510 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 ADAM32Q8TC27 787 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 EXOC4Q96A65 974 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 CLIP3Q96DZ5 547 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 PCED1BQ96HM7 432 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 MPP4Q96JB8 637 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 TWNKQ96RR1 684 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 TMEM175Q9BSA9 504 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 SYNCQ9H7C4 482 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 RBM12Q9NTZ6 932 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 PAIP2BQ9ULR5 123 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 INVSQ9Y283 1065 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 ANTXRLA6NF34 631 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 H7C4K7 107 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 BUB1BO60566 1050 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 E2F6O75461 281 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 PPP1R37O75864 691 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 IL18RAPO95256 599 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 SLC9A1P19634 815 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 FUT4P22083 530 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 HOXD11P31277 338 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 KLK7P49862 253 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 ELMSAN1Q6PJG2 1045 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 TSSK4Q6SA08 328 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 ARID3BQ8IVW6 561 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 SUSD3Q96L08 255 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 PHF7Q9BWX1 381 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 EBF3Q9H4W6 596 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms