RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 HPDLQ96IR7 371 aa21.67■■□□□ 1.06
SQSTM1-215ENST00000514093 ACCSQ96QU6 501 aa21.67■■□□□ 1.06
SQSTM1-215ENST00000514093 CBWD1Q9BRT8 395 aa21.67■■□□□ 1.06
SQSTM1-215ENST00000514093 HCN2Q9UL51 889 aa21.67■■□□□ 1.06
SQSTM1-215ENST00000514093 LOC400499M0QZD8 3231 aa21.67■■□□□ 1.06
SQSTM1-215ENST00000514093 IGHV1OR15-9A0A0B4J2B8 117 aa21.66■■□□□ 1.06
SQSTM1-215ENST00000514093 TRIM66O15016 1216 aa21.66■■□□□ 1.06
SQSTM1-215ENST00000514093 TRIM24O15164 1050 aa21.66■■□□□ 1.06
SQSTM1-215ENST00000514093 HOXB2P14652 356 aa21.66■■□□□ 1.06
SQSTM1-215ENST00000514093 CACNA2D1P54289 1103 aa21.66■■□□□ 1.06
SQSTM1-215ENST00000514093 GAD2Q05329 585 aa21.66■■□□□ 1.06
SQSTM1-215ENST00000514093 MDH1BQ5I0G3 518 aa21.66■■□□□ 1.06
SQSTM1-215ENST00000514093 L1TD1Q5T7N2 865 aaKnown RBP21.66■■□□□ 1.06
SQSTM1-215ENST00000514093 HS2ST1Q7LGA3 356 aa21.66■■□□□ 1.06
SQSTM1-215ENST00000514093 LIMS2Q7Z4I7 341 aa21.66■■□□□ 1.06
SQSTM1-215ENST00000514093 MIB1Q86YT6 1006 aa21.66■■□□□ 1.06
SQSTM1-215ENST00000514093 KIAA1958Q8N8K9 716 aa21.66■■□□□ 1.06
SQSTM1-215ENST00000514093 TRIML1Q8N9V2 468 aa21.66■■□□□ 1.06
SQSTM1-215ENST00000514093 HSPA12BQ96MM6 686 aa21.66■■□□□ 1.06
SQSTM1-215ENST00000514093 DNAAF2Q9NVR5 837 aaKnown RBP21.66■■□□□ 1.06
SQSTM1-215ENST00000514093 CYP8B1Q9UNU6 501 aa21.66■■□□□ 1.06
SQSTM1-215ENST00000514093 EXOC7Q9UPT5 735 aa21.66■■□□□ 1.06
SQSTM1-215ENST00000514093 R3HCC1Q9Y3T6 440 aaKnown RBP21.66■■□□□ 1.06
SQSTM1-215ENST00000514093 PCDHB9Q9Y5E1 797 aa21.66■■□□□ 1.06
SQSTM1-215ENST00000514093 MYO18AQ92614 2054 aaKnown RBP21.66■■□□□ 1.06
SQSTM1-215ENST00000514093 SMG1Q96Q15 3661 aaKnown RBP21.66■■□□□ 1.06
SQSTM1-215ENST00000514093 PTPRJQ12913 1337 aa21.65■■□□□ 1.06
SQSTM1-215ENST00000514093 H3BQV1 296 aa21.65■■□□□ 1.06
SQSTM1-215ENST00000514093 TULP3O75386 442 aa21.65■■□□□ 1.06
SQSTM1-215ENST00000514093 GCNT3O95395 438 aa21.65■■□□□ 1.06
SQSTM1-215ENST00000514093 LDHAP00338 332 aaKnown RBP21.65■■□□□ 1.06
SQSTM1-215ENST00000514093 SYPP08247 313 aa21.65■■□□□ 1.06
SQSTM1-215ENST00000514093 FTH1P19P0C7X4 201 aa21.65■■□□□ 1.06
SQSTM1-215ENST00000514093 PPP3CCP48454 512 aa21.65■■□□□ 1.06
SQSTM1-215ENST00000514093 CASP5P51878 434 aa21.65■■□□□ 1.06
SQSTM1-215ENST00000514093 NOP14P78316 857 aaKnown RBP21.65■■□□□ 1.06
SQSTM1-215ENST00000514093 MYO1EQ12965 1108 aa21.65■■□□□ 1.06
SQSTM1-215ENST00000514093 MAPRE1Q15691 268 aaKnown RBP21.65■■□□□ 1.06
SQSTM1-215ENST00000514093 C10orf76Q5T2E6 689 aa21.65■■□□□ 1.06
SQSTM1-215ENST00000514093 TDRD10Q5VZ19 366 aaKnown RBP21.65■■□□□ 1.06
SQSTM1-215ENST00000514093 USP49Q70CQ1 688 aa21.65■■□□□ 1.06
SQSTM1-215ENST00000514093 DPH6Q7L8W6 267 aa21.65■■□□□ 1.06
SQSTM1-215ENST00000514093 SYCP3Q8IZU3 236 aa21.65■■□□□ 1.06
SQSTM1-215ENST00000514093 SPRYD3Q8NCJ5 442 aa21.65■■□□□ 1.06
SQSTM1-215ENST00000514093 OR5B17Q8NGF7 314 aa21.65■■□□□ 1.06
SQSTM1-215ENST00000514093 MYCBPAPQ8TBZ2 947 aa21.65■■□□□ 1.06
SQSTM1-215ENST00000514093 MDM1Q8TC05 714 aa21.65■■□□□ 1.06
SQSTM1-215ENST00000514093 HNRNPLLQ8WVV9 542 aaKnown RBP21.65■■□□□ 1.06
SQSTM1-215ENST00000514093 MMS19Q96T76 1030 aa21.65■■□□□ 1.06
SQSTM1-215ENST00000514093 CCDC86Q9H6F5 360 aaKnown RBP21.65■■□□□ 1.06
SQSTM1-215ENST00000514093 CD93Q9NPY3 652 aa21.65■■□□□ 1.06
SQSTM1-215ENST00000514093 EHD2Q9NZN4 543 aa21.65■■□□□ 1.06
SQSTM1-215ENST00000514093 TBC1D14Q9P2M4 693 aa21.65■■□□□ 1.06
SQSTM1-215ENST00000514093 NME7Q9Y5B8 376 aa21.65■■□□□ 1.06
SQSTM1-215ENST00000514093 A0A1W2PQF6 199 aa21.64■■□□□ 1.05
SQSTM1-215ENST00000514093 GARTP22102 1010 aa21.64■■□□□ 1.05
SQSTM1-215ENST00000514093 LONP1P36776 959 aaKnown RBP21.64■■□□□ 1.05
SQSTM1-215ENST00000514093 HNRNPDQ14103 355 aaKnown RBP21.64■■□□□ 1.05
SQSTM1-215ENST00000514093 ANO4Q32M45 955 aa21.64■■□□□ 1.05
SQSTM1-215ENST00000514093 PLEKHG6Q3KR16 790 aa21.64■■□□□ 1.05
SQSTM1-215ENST00000514093 RABEPKQ7Z6M1 372 aa21.64■■□□□ 1.05
SQSTM1-215ENST00000514093 ETFBKMTQ8IXQ9 262 aa21.64■■□□□ 1.05
SQSTM1-215ENST00000514093 RGL4Q8IZJ4 473 aa21.64■■□□□ 1.05
SQSTM1-215ENST00000514093 ADAMTS14Q8WXS8 1223 aa21.64■■□□□ 1.05
SQSTM1-215ENST00000514093 ANKRD36BP1Q96IX9 119 aa21.64■■□□□ 1.05
SQSTM1-215ENST00000514093 EPSTI1Q96J88 318 aa21.64■■□□□ 1.05
SQSTM1-215ENST00000514093 C8orf48Q96LL4 319 aa21.64■■□□□ 1.05
SQSTM1-215ENST00000514093 CEP295NLQ96MC4 621 aa21.64■■□□□ 1.05
SQSTM1-215ENST00000514093 ACOX2Q99424 681 aa21.64■■□□□ 1.05
SQSTM1-215ENST00000514093 KIF2CQ99661 725 aa21.64■■□□□ 1.05
SQSTM1-215ENST00000514093 MRPL45Q9BRJ2 306 aaKnown RBP21.64■■□□□ 1.05
SQSTM1-215ENST00000514093 FGFBP2Q9BYJ0 223 aa21.64■■□□□ 1.05
SQSTM1-215ENST00000514093 TMEM30AQ9NV96 361 aa21.64■■□□□ 1.05
SQSTM1-215ENST00000514093 DEC1Q9P2X7 70 aa21.64■■□□□ 1.05
SQSTM1-215ENST00000514093 KIF3AQ9Y496 699 aa21.64■■□□□ 1.05
SQSTM1-215ENST00000514093 A0A1W2PQD8 194 aa21.63■■□□□ 1.05
SQSTM1-215ENST00000514093 ZIC2O95409 532 aaPredicted RBP21.63■■□□□ 1.05
SQSTM1-215ENST00000514093 WARSP23381 471 aaKnown RBP21.63■■□□□ 1.05
SQSTM1-215ENST00000514093 MAOBP27338 520 aa21.63■■□□□ 1.05
SQSTM1-215ENST00000514093 BTBD8Q5XKL5 378 aa21.63■■□□□ 1.05
SQSTM1-215ENST00000514093 CCNI2Q6ZMN8 369 aaPredicted RBP21.63■■□□□ 1.05
SQSTM1-215ENST00000514093 TRMT11Q7Z4G4 463 aaKnown RBP21.63■■□□□ 1.05
SQSTM1-215ENST00000514093 DDX42Q86XP3 938 aaKnown RBP eCLIP21.63■■□□□ 1.052e-11■□□□□ 10.2
SQSTM1-215ENST00000514093 TMEM25Q86YD3 366 aa21.63■■□□□ 1.05
SQSTM1-215ENST00000514093 NAXDQ8IW45 347 aa21.63■■□□□ 1.05
SQSTM1-215ENST00000514093 WBP2Q969T9 261 aa21.63■■□□□ 1.05
SQSTM1-215ENST00000514093 BBC3Q96PG8 261 aaPredicted RBP21.63■■□□□ 1.05
SQSTM1-215ENST00000514093 SLITRK1Q96PX8 696 aa21.63■■□□□ 1.05
SQSTM1-215ENST00000514093 SLC6A17Q9H1V8 727 aa21.63■■□□□ 1.05
SQSTM1-215ENST00000514093 INTS13Q9NVM9 706 aa21.63■■□□□ 1.05
SQSTM1-215ENST00000514093 CHORDC1Q9UHD1 332 aaPredicted RBP21.63■■□□□ 1.05
SQSTM1-215ENST00000514093 CELSR3Q9NYQ7 3312 aa21.63■■□□□ 1.05
SQSTM1-215ENST00000514093 GCN1Q92616 2671 aaKnown RBP21.63■■□□□ 1.05
SQSTM1-215ENST00000514093 E2F8A0AVK6 867 aa21.62■■□□□ 1.05
SQSTM1-215ENST00000514093 COCHO43405 550 aa21.62■■□□□ 1.05
SQSTM1-215ENST00000514093 GJB3O75712 270 aa21.62■■□□□ 1.05
SQSTM1-215ENST00000514093 NDUFV2P19404 249 aa21.62■■□□□ 1.05
SQSTM1-215ENST00000514093 NTSR1P30989 418 aa21.62■■□□□ 1.05
SQSTM1-215ENST00000514093 EGFLAMQ63HQ2 1017 aa21.62■■□□□ 1.05
SQSTM1-215ENST00000514093 BBS7Q8IWZ6 715 aa21.62■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms