RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 OXNAD1Q96HP4 312 aaPredicted RBP9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 APOPT1Q96IL0 206 aa9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 ZNF333Q96JL9 665 aa9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 ACAP3Q96P50 834 aa9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 PEBP4Q96S96 227 aa9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 PCYT2Q99447 389 aa9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 E7ENQ6 273 aa9.65□□□□□ -0.87
LIMCH1-215ENST00000512632 APOC4-APOC2K7ER74 178 aa9.65□□□□□ -0.87
LIMCH1-215ENST00000512632 TOP3BO95985 862 aaKnown RBP9.65□□□□□ -0.87
LIMCH1-215ENST00000512632 APOC2P02655 101 aa9.65□□□□□ -0.87
LIMCH1-215ENST00000512632 MYCNP04198 464 aaPredicted RBP9.65□□□□□ -0.87
LIMCH1-215ENST00000512632 APRTP07741 180 aa9.65□□□□□ -0.87
LIMCH1-215ENST00000512632 AMPD1P23109 780 aa9.65□□□□□ -0.87
LIMCH1-215ENST00000512632 VHLP40337 213 aa9.65□□□□□ -0.87
LIMCH1-215ENST00000512632 ASPAP45381 313 aa9.65□□□□□ -0.87
LIMCH1-215ENST00000512632 BST1Q10588 318 aa9.65□□□□□ -0.87
LIMCH1-215ENST00000512632 TREML1Q86YW5 311 aa9.65□□□□□ -0.87
LIMCH1-215ENST00000512632 ZNF280CQ8ND82 737 aa9.65□□□□□ -0.87
LIMCH1-215ENST00000512632 CMASQ8NFW8 434 aaPredicted RBP9.65□□□□□ -0.87
LIMCH1-215ENST00000512632 TRAPPC12Q8WVT3 735 aa9.65□□□□□ -0.87
LIMCH1-215ENST00000512632 PPP1R16BQ96T49 567 aa9.65□□□□□ -0.87
LIMCH1-215ENST00000512632 NRBP2Q9NSY0 501 aa9.65□□□□□ -0.87
LIMCH1-215ENST00000512632 MAD1L1Q9Y6D9 718 aa9.65□□□□□ -0.87
LIMCH1-215ENST00000512632 F5H423 210 aaPredicted RBP9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 KCNN4O15554 427 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 PRKCBP05771 671 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 ABCD1P33897 745 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 ZCCHC23Q6ZST2 131 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 XYLT1Q86Y38 959 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 TEX9Q8N6V9 391 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 MTMR14Q8NCE2 650 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 ZNF483Q8TF39 744 aaPredicted RBP9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 SKA1Q96BD8 255 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 SDCBP2Q9H190 292 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 SMYD3Q9H7B4 428 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 PCDHGC3Q9UN70 934 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 SMIM24O75264 130 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 PSMG1O95456 288 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 TNNC2P02585 160 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 DPEP1P16444 411 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 NEK3P51956 506 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 ZNF667Q5HYK9 610 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 ZBED3Q96IU2 234 aaPredicted RBP9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 PIWIL1Q96J94 861 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 RILPQ96NA2 401 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 ACO2Q99798 780 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 ADPGKQ9BRR6 497 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 TMEM134Q9H6X4 195 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 PIDD1Q9HB75 910 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 EFR3BQ9Y2G0 817 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 AFG3L2Q9Y4W6 797 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 TEX264Q9Y6I9 313 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 NDC80O14777 642 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 TRUB2O95900 331 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 LMNAP02545 664 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 HOXC6P09630 235 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 DHRS4L1P0CG22 281 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 CXCL8P10145 99 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 CHI3L2Q15782 390 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 OR6B2Q6IFH4 312 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 ZPBP2Q6X784 338 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 NGRNQ9NPE2 291 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 PICK1Q9NRD5 415 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 FETUBQ9UGM5 382 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 ZC3H7BQ9UGR2 993 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 CPSF3Q9UKF6 684 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 M0QYV0 167 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 FAM189A1O60320 539 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 PDGFRAP16234 1089 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 UBA1P22314 1058 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 RBL1P28749 1068 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 SLC34A1Q06495 639 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 MROH9Q5TGP6 573 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 RNF220Q5VTB9 566 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 LRRC74BQ6ZQY2 392 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 ANKRD27Q96NW4 1050 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 THTPAQ9BU02 230 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 COL4A5P29400 1685 aa9.64□□□□□ -0.87
LIMCH1-215ENST00000512632 HNRNPCL1O60812 293 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 BAG2O95816 211 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 CDH5P33151 784 aaPredicted RBP9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 RGS7P49802 495 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 MRPS35P82673 323 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 SLC18A2Q05940 514 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 LAMTOR4Q0VGL1 99 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 TNFAIP1Q13829 316 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 CES4AQ5XG92 561 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 SH2D5Q6ZV89 423 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 SLC26A11Q86WA9 606 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 SLC25A41Q8N5S1 370 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 SMC1BQ8NDV3 1235 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 CCDC110Q8TBZ0 833 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 RXFP2Q8WXD0 754 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 HEXIM2Q96MH2 286 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 TTC1Q99614 292 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 DDX50Q9BQ39 737 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 NR2E3Q9Y5X4 410 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 I3L4J1 428 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 PPP1R12AO14974 1030 aaPredicted RBP9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 PTPRAP18433 802 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms