RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 CCDC185Q8N715 623 aa9.23□□□□□ -0.93
VCAN-208ENST00000512590 MYCBPAPQ8TBZ2 947 aa9.23□□□□□ -0.93
VCAN-208ENST00000512590 SGCDQ92629 289 aa9.23□□□□□ -0.93
VCAN-208ENST00000512590 COL26A1Q96A83 441 aa9.23□□□□□ -0.93
VCAN-208ENST00000512590 TTLL2Q9BWV7 592 aa9.23□□□□□ -0.93
VCAN-208ENST00000512590 PRMT7Q9NVM4 692 aaPredicted RBP9.23□□□□□ -0.93
VCAN-208ENST00000512590 WHRNQ9P202 907 aa9.23□□□□□ -0.93
VCAN-208ENST00000512590 CHORDC1Q9UHD1 332 aaPredicted RBP9.23□□□□□ -0.93
VCAN-208ENST00000512590 CHKBQ9Y259 395 aa9.23□□□□□ -0.93
VCAN-208ENST00000512590 ERBB4Q15303 1308 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 CFAP73A6NFT4 308 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 H7C0S8 307 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 FARP2O94887 1054 aaPredicted RBP9.22□□□□□ -0.93
VCAN-208ENST00000512590 RASA1P20936 1047 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 DR1Q01658 176 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 OTOAQ7RTW8 1153 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 FAM220AQ7Z4H9 259 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 ACOT1Q86TX2 421 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 HIST2H2ABQ8IUE6 130 aaPredicted RBP9.22□□□□□ -0.93
VCAN-208ENST00000512590 TRAPPC5Q8IUR0 188 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 REPS1Q96D71 796 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 PBKQ96KB5 322 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 SCN3BQ9NY72 215 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 UBP1Q9NZI7 540 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 ARIH1Q9Y4X5 557 aaPredicted RBP9.22□□□□□ -0.93
VCAN-208ENST00000512590 ARAP3Q8WWN8 1544 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 SMIM31A0A1B0GVY4 71 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 SLC28A2O43868 658 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 RRM1P23921 792 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 VARSP26640 1264 aaKnown RBP9.22□□□□□ -0.93
VCAN-208ENST00000512590 ITGA8P53708 1063 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 CDH8P55286 799 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 MRPS35P82673 323 aaKnown RBP9.22□□□□□ -0.93
VCAN-208ENST00000512590 NEK5Q6P3R8 708 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 TPGS1Q6ZTW0 290 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 CNPY3Q9BT09 278 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 SESN1Q9Y6P5 492 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 TMEM88BA6NKF7 163 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 DDX3XO00571 662 aaKnown RBP eCLIP9.22□□□□□ -0.93
VCAN-208ENST00000512590 CABYRO75952 493 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 THP07101 528 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 SLC2A4P14672 509 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 ITIH2P19823 946 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 CBX3Q13185 183 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 NCF4Q15080 339 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 KLHL40Q2TBA0 621 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 SARM1Q6SZW1 724 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 PTAR1Q7Z6K3 402 aaPredicted RBP9.22□□□□□ -0.93
VCAN-208ENST00000512590 DEFB132Q7Z7B7 95 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 TRPV3Q8NET8 790 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 EEF2KMTQ96G04 330 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 DEFB118Q96PH6 123 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 PACSIN1Q9BY11 444 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 RHOBTB2Q9BYZ6 727 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 PARVAQ9NVD7 372 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 TUBE1Q9UJT0 475 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 KIAA0586Q9BVV6 1533 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 C9J4A7 227 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 H3BNH8 94 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 NKRFO15226 690 aaKnown RBP eCLIP9.22□□□□□ -0.93
VCAN-208ENST00000512590 TMCC2O75069 709 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 PALMO75781 387 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 SERPINH1P50454 418 aaKnown RBP9.22□□□□□ -0.93
VCAN-208ENST00000512590 CAV3P56539 151 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 NFIL3Q16649 462 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 CHADLQ6NUI6 762 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 FBXO33Q7Z6M2 555 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 NT5DC3Q86UY8 548 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 MIER2Q8N344 545 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 DTX3LQ8TDB6 740 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 MTMR8Q96EF0 704 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 DCLK3Q9C098 648 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 DEFB129Q9H1M3 183 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 IMPACTQ9P2X3 320 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 POU2F3Q9UKI9 436 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 SLC27A6Q9Y2P4 619 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 RWDD3Q9Y3V2 267 aa9.22□□□□□ -0.93
VCAN-208ENST00000512590 CCDC166P0CW27 439 aa9.21□□□□□ -0.93
VCAN-208ENST00000512590 TPH1P17752 444 aa9.21□□□□□ -0.93
VCAN-208ENST00000512590 CPA2P48052 419 aa9.21□□□□□ -0.93
VCAN-208ENST00000512590 POLR2LP62875 67 aaKnown RBP9.21□□□□□ -0.93
VCAN-208ENST00000512590 SCARA3Q6AZY7 606 aa9.21□□□□□ -0.93
VCAN-208ENST00000512590 PGM2L1Q6PCE3 622 aa9.21□□□□□ -0.93
VCAN-208ENST00000512590 OR10H5Q8NGA6 315 aa9.21□□□□□ -0.93
VCAN-208ENST00000512590 GPRASP2Q96D09 838 aa9.21□□□□□ -0.93
VCAN-208ENST00000512590 CNDP1Q96KN2 507 aa9.21□□□□□ -0.93
VCAN-208ENST00000512590 C5orf34Q96MH7 638 aa9.21□□□□□ -0.93
VCAN-208ENST00000512590 MRPL39Q9NYK5 338 aaKnown RBP9.21□□□□□ -0.93
VCAN-208ENST00000512590 NCF1BA6NI72 391 aaPredicted RBP9.21□□□□□ -0.93
VCAN-208ENST00000512590 SAC3D1A6NKF1 404 aa9.21□□□□□ -0.93
VCAN-208ENST00000512590 NCF1CA8MVU1 366 aaPredicted RBP9.21□□□□□ -0.93
VCAN-208ENST00000512590 KIAA0391O15091 583 aaKnown RBP9.21□□□□□ -0.93
VCAN-208ENST00000512590 MTSS1O43312 755 aa9.21□□□□□ -0.93
VCAN-208ENST00000512590 NCF1P14598 390 aaPredicted RBP9.21□□□□□ -0.93
VCAN-208ENST00000512590 ITGB6P18564 788 aa9.21□□□□□ -0.93
VCAN-208ENST00000512590 SELENOVP59797 346 aa9.21□□□□□ -0.93
VCAN-208ENST00000512590 SP2Q02086 613 aa9.21□□□□□ -0.93
VCAN-208ENST00000512590 ERMARDQ5T6L9 678 aa9.21□□□□□ -0.93
VCAN-208ENST00000512590 CLEC4GQ6UXB4 293 aa9.21□□□□□ -0.93
VCAN-208ENST00000512590 KIAA1257Q9ULG3 409 aa9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms