RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 MTERF2Q49AM1 385 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 CMPK2Q5EBM0 449 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 TTC38Q5R3I4 469 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 GPRC6AQ5T6X5 926 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 ITPRIPL1Q6GPH6 555 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP3.69□□□□□ -1.82
USP53-205ENST00000509769 ANKS3Q6ZW76 656 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 CDC37L1Q7L3B6 337 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 ENOSF1Q7L5Y1 443 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 LRRC6Q86X45 466 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 CD302Q8IX05 232 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 SLFN12Q8IYM2 578 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 ALLCQ8N6M5 410 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 OR7A2PQ8NGA2 310 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 SETD6Q8TBK2 473 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 CYGBQ8WWM9 190 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 SLC9A6Q92581 669 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 GIMAP5Q96F15 307 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 L3MBTL3Q96JM7 780 aaPredicted RBP3.69□□□□□ -1.82
USP53-205ENST00000509769 ASB2Q96Q27 587 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 SMAD5Q99717 465 aaKnown RBP3.69□□□□□ -1.82
USP53-205ENST00000509769 MIPEPQ99797 713 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 C1QTNF1Q9BXJ1 281 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 UGT2B28Q9BY64 529 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 REXO4Q9GZR2 422 aaKnown RBP3.69□□□□□ -1.82
USP53-205ENST00000509769 RIBC2Q9H4K1 309 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 RUBCNLQ9H714 662 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 EPB41L4AQ9HCS5 686 aaPredicted RBP3.69□□□□□ -1.82
USP53-205ENST00000509769 ZNF334Q9HCZ1 680 aaPredicted RBP3.69□□□□□ -1.82
USP53-205ENST00000509769 C1orf112Q9NSG2 853 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 IGSF5Q9NSI5 407 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 CUEDC1Q9NWM3 386 aaPredicted RBP3.69□□□□□ -1.82
USP53-205ENST00000509769 IMPAD1Q9NX62 359 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 SELENONQ9NZV5 590 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 PPP4R1LQ9P1A2 415 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 LNPEPQ9UIQ6 1025 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 CDH7Q9ULB5 785 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 ABT1Q9ULW3 272 aaKnown RBP3.69□□□□□ -1.82
USP53-205ENST00000509769 BARX2Q9UMQ3 279 aaPredicted RBP3.69□□□□□ -1.82
USP53-205ENST00000509769 GRIP1Q9Y3R0 1128 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 IRAK3Q9Y616 596 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 STK36Q9NRP7 1315 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 SLC35F4A4IF30 521 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 TRAPPC13A5PLN9 417 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 TRIM49BA6NDI0 452 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 SPDYE5A6NIY4 337 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 TMEM114B3SHH9 223 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 TRIM49D1C9J1S8 452 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 ATP6V1G2-DDX39BF2Z307 99 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 K7ERI5 159 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 B3GALNT1O75752 331 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 ITGB1P05556 798 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 ANXA6P08133 673 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 MYL6BP14649 208 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 STIP1P31948 543 aaKnown RBP3.69□□□□□ -1.82
USP53-205ENST00000509769 EPHB1P54762 984 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 SCN1BQ07699 218 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 IFRD2Q12894 506 aaPredicted RBP3.69□□□□□ -1.82
USP53-205ENST00000509769 FASTKD1Q53R41 847 aaKnown RBP3.69□□□□□ -1.82
USP53-205ENST00000509769 SNX30Q5VWJ9 437 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 SLC9A4Q6AI14 798 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 MACC1Q6ZN28 852 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 FRMD7Q6ZUT3 714 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 ZNF804AQ7Z570 1209 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 EXOC3L1Q86VI1 746 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 SLITRK4Q8IW52 837 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 MYO1HQ8N1T3 1032 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 OR14K1Q8NGZ2 314 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 PLEKHG4BQ96PX9 1271 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 FAM111AQ96PZ2 611 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 DNAJC7Q99615 494 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 PI4K2AQ9BTU6 479 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 RACGAP1Q9H0H5 632 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 SP140LQ9H930 580 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 PRDM16Q9HAZ2 1276 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 VTA1Q9NP79 307 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 BIN3Q9NQY0 253 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 PTTG3PQ9NZH4 202 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 NYAP2Q9P242 653 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 SPASTQ9UBP0 616 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 ZMAT5Q9UDW3 170 aaKnown RBP3.69□□□□□ -1.82
USP53-205ENST00000509769 ZNF180Q9UJW8 692 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 GRID1Q9ULK0 1009 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 MEMO1Q9Y316 297 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 ATP8B3O60423 1300 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 MYO3BQ8WXR4 1341 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 A0A1W2PPC1 479 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 CCDC189A1A4V9 331 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 SPDYE16A6NNV3 312 aaPredicted RBP3.69□□□□□ -1.82
USP53-205ENST00000509769 B2RBV5 119 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 SULT1C2O00338 296 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 SEC24AO95486 1093 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 THRBP10828 461 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 MTHFD1P11586 935 aaKnown RBP3.69□□□□□ -1.82
USP53-205ENST00000509769 IFNAR1P17181 557 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 ERCC2P18074 760 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 MARCKSP29966 332 aaPredicted RBP3.69□□□□□ -1.82
USP53-205ENST00000509769 PRKAR2BP31323 418 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 IFNGR2P38484 337 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 NAMPTP43490 491 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms