RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 GAREM2Q75VX8 874 aa31.18■■■□□ 2.58
LIMCH1-211ENST00000509638 CPA5Q8WXQ8 436 aa31.18■■■□□ 2.58
LIMCH1-211ENST00000509638 TCEAL4Q96EI5 215 aa31.18■■■□□ 2.58
LIMCH1-211ENST00000509638 GCNAQ96QF7 691 aa31.18■■■□□ 2.58
LIMCH1-211ENST00000509638 SLC4A5Q9BY07 1137 aa31.18■■■□□ 2.58
LIMCH1-211ENST00000509638 AVENQ9NQS1 362 aaPredicted RBP31.18■■■□□ 2.58
LIMCH1-211ENST00000509638 COMMD8Q9NX08 183 aa31.18■■■□□ 2.58
LIMCH1-211ENST00000509638 USP3Q9Y6I4 520 aa31.18■■■□□ 2.58
LIMCH1-211ENST00000509638 DOCK8Q8NF50 2099 aa31.18■■■□□ 2.58
LIMCH1-211ENST00000509638 A0A1W2PRU2 124 aa31.17■■■□□ 2.58
LIMCH1-211ENST00000509638 FAM92AA1XBS5 289 aa31.17■■■□□ 2.58
LIMCH1-211ENST00000509638 E5RJQ4 531 aa31.17■■■□□ 2.58
LIMCH1-211ENST00000509638 CLEC16AQ2KHT3 1053 aa31.17■■■□□ 2.58
LIMCH1-211ENST00000509638 PTPN20Q4JDL3 420 aa31.17■■■□□ 2.58
LIMCH1-211ENST00000509638 TMEM150AQ86TG1 271 aa31.17■■■□□ 2.58
LIMCH1-211ENST00000509638 GADD45GIP1Q8TAE8 222 aaPredicted RBP31.17■■■□□ 2.58
LIMCH1-211ENST00000509638 PPP1R13BQ96KQ4 1090 aa31.17■■■□□ 2.58
LIMCH1-211ENST00000509638 ULBP1Q9BZM6 244 aa31.17■■■□□ 2.58
LIMCH1-211ENST00000509638 TJP2Q9UDY2 1190 aa31.17■■■□□ 2.58
LIMCH1-211ENST00000509638 MRPS23Q9Y3D9 190 aaKnown RBP31.17■■■□□ 2.58
LIMCH1-211ENST00000509638 FGF19O95750 216 aa31.17■■■□□ 2.58
LIMCH1-211ENST00000509638 USP17L7P0C7H9 530 aa31.17■■■□□ 2.58
LIMCH1-211ENST00000509638 TNFAIP3P21580 790 aa31.17■■■□□ 2.58
LIMCH1-211ENST00000509638 FSHRP23945 695 aa31.17■■■□□ 2.58
LIMCH1-211ENST00000509638 CDC25CP30307 473 aa31.17■■■□□ 2.58
LIMCH1-211ENST00000509638 RPL34P49207 117 aaKnown RBP31.17■■■□□ 2.58
LIMCH1-211ENST00000509638 GET4Q7L5D6 327 aaPredicted RBP31.17■■■□□ 2.58
LIMCH1-211ENST00000509638 ITFG1Q8TB96 612 aa31.17■■■□□ 2.58
LIMCH1-211ENST00000509638 SHKBP1Q8TBC3 707 aa31.17■■■□□ 2.58
LIMCH1-211ENST00000509638 CYLDQ9NQC7 956 aa31.17■■■□□ 2.58
LIMCH1-211ENST00000509638 GMIPQ9P107 970 aa31.17■■■□□ 2.58
LIMCH1-211ENST00000509638 SCML2Q9UQR0 700 aa31.17■■■□□ 2.58
LIMCH1-211ENST00000509638 GOLGA6L6A8MZA4 724 aa31.16■■■□□ 2.58
LIMCH1-211ENST00000509638 GJA1P17302 382 aa31.16■■■□□ 2.58
LIMCH1-211ENST00000509638 ACADSBP45954 432 aa31.16■■■□□ 2.58
LIMCH1-211ENST00000509638 PTCRAQ6ISU1 281 aaPredicted RBP31.16■■■□□ 2.58
LIMCH1-211ENST00000509638 CCDC186Q7Z3E2 898 aa31.16■■■□□ 2.58
LIMCH1-211ENST00000509638 IPO4Q8TEX9 1081 aaKnown RBP31.16■■■□□ 2.58
LIMCH1-211ENST00000509638 ING5Q8WYH8 240 aa31.16■■■□□ 2.58
LIMCH1-211ENST00000509638 SYNCQ9H7C4 482 aa31.16■■■□□ 2.58
LIMCH1-211ENST00000509638 ZNF197O14709 1029 aa31.15■■■□□ 2.58
LIMCH1-211ENST00000509638 ZBED1O96006 694 aa31.15■■■□□ 2.58
LIMCH1-211ENST00000509638 F11P03951 625 aa31.15■■■□□ 2.58
LIMCH1-211ENST00000509638 UNGP13051 313 aaPredicted RBP31.15■■■□□ 2.58
LIMCH1-211ENST00000509638 CEBPBP17676 345 aa31.15■■■□□ 2.58
LIMCH1-211ENST00000509638 CENPCQ03188 943 aa31.15■■■□□ 2.58
LIMCH1-211ENST00000509638 VPS36Q86VN1 386 aa31.15■■■□□ 2.58
LIMCH1-211ENST00000509638 MIS12Q9H081 205 aa31.15■■■□□ 2.58
LIMCH1-211ENST00000509638 ATXN3LQ9H3M9 355 aa31.15■■■□□ 2.58
LIMCH1-211ENST00000509638 CNGB3Q9NQW8 809 aa31.15■■■□□ 2.58
LIMCH1-211ENST00000509638 DDX3XO00571 662 aaKnown RBP eCLIP31.14■■■□□ 2.58
LIMCH1-211ENST00000509638 MOSPD3O75425 235 aa31.14■■■□□ 2.58
LIMCH1-211ENST00000509638 NSFP46459 744 aaKnown RBP31.14■■■□□ 2.58
LIMCH1-211ENST00000509638 CYP4F8P98187 520 aa31.14■■■□□ 2.58
LIMCH1-211ENST00000509638 TMEM110Q86TL2 294 aa31.14■■■□□ 2.58
LIMCH1-211ENST00000509638 PDZD8Q8NEN9 1154 aa31.14■■■□□ 2.58
LIMCH1-211ENST00000509638 SLC30A5Q8TAD4 765 aa31.14■■■□□ 2.58
LIMCH1-211ENST00000509638 CLEC4CQ8WTT0 213 aa31.14■■■□□ 2.58
LIMCH1-211ENST00000509638 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP31.14■■■□□ 2.58
LIMCH1-211ENST00000509638 NCANO14594 1321 aa31.14■■■□□ 2.57
LIMCH1-211ENST00000509638 ERBB2P04626 1255 aa31.13■■■□□ 2.57
LIMCH1-211ENST00000509638 EIF4A3P38919 411 aaKnown RBP31.13■■■□□ 2.57
LIMCH1-211ENST00000509638 MSANTD4Q8NCY6 345 aa31.13■■■□□ 2.57
LIMCH1-211ENST00000509638 OVCA2Q8WZ82 227 aa31.13■■■□□ 2.57
LIMCH1-211ENST00000509638 NDRG1Q92597 394 aaKnown RBP31.13■■■□□ 2.57
LIMCH1-211ENST00000509638 PANX2Q96RD6 677 aa31.13■■■□□ 2.57
LIMCH1-211ENST00000509638 TRPM5Q9NZQ8 1165 aa31.13■■■□□ 2.57
LIMCH1-211ENST00000509638 TEAD2Q15562 447 aa31.13■■■□□ 2.57
LIMCH1-211ENST00000509638 STXBP5Q5T5C0 1151 aa31.13■■■□□ 2.57
LIMCH1-211ENST00000509638 PM20D1Q6GTS8 502 aa31.13■■■□□ 2.57
LIMCH1-211ENST00000509638 ERICH1Q86X53 443 aa31.13■■■□□ 2.57
LIMCH1-211ENST00000509638 ANP32BQ92688 251 aaKnown RBP31.13■■■□□ 2.57
LIMCH1-211ENST00000509638 CHP1Q99653 195 aa31.13■■■□□ 2.57
LIMCH1-211ENST00000509638 TAS2R14Q9NYV8 317 aa31.13■■■□□ 2.57
LIMCH1-211ENST00000509638 ADAMTS1Q9UHI8 967 aa31.13■■■□□ 2.57
LIMCH1-211ENST00000509638 PAPSS1O43252 624 aaPredicted RBP31.12■■■□□ 2.57
LIMCH1-211ENST00000509638 FBXO21O94952 628 aa31.12■■■□□ 2.57
LIMCH1-211ENST00000509638 PGFP49763 221 aa31.12■■■□□ 2.57
LIMCH1-211ENST00000509638 DAOAP59103 153 aa31.12■■■□□ 2.57
LIMCH1-211ENST00000509638 SMAD2Q15796 467 aaKnown RBP31.12■■■□□ 2.57
LIMCH1-211ENST00000509638 PUS10Q3MIT2 529 aaKnown RBP31.12■■■□□ 2.57
LIMCH1-211ENST00000509638 C2CD6Q53TS8 623 aa31.12■■■□□ 2.57
LIMCH1-211ENST00000509638 MMS22LQ6ZRQ5 1243 aa31.12■■■□□ 2.57
LIMCH1-211ENST00000509638 BHLHA9Q7RTU4 235 aa31.12■■■□□ 2.57
LIMCH1-211ENST00000509638 SCUBE3Q8IX30 993 aa31.12■■■□□ 2.57
LIMCH1-211ENST00000509638 MRPS31Q92665 395 aaKnown RBP31.12■■■□□ 2.57
LIMCH1-211ENST00000509638 CHORDC1Q9UHD1 332 aaPredicted RBP31.12■■■□□ 2.57
LIMCH1-211ENST00000509638 ZNF840PA6NDX5 716 aa31.11■■■□□ 2.57
LIMCH1-211ENST00000509638 ABL1P00519 1130 aa31.11■■■□□ 2.57
LIMCH1-211ENST00000509638 MMP8P22894 467 aa31.11■■■□□ 2.57
LIMCH1-211ENST00000509638 PPP3CCP48454 512 aa31.11■■■□□ 2.57
LIMCH1-211ENST00000509638 KCNQ1P51787 676 aa31.11■■■□□ 2.57
LIMCH1-211ENST00000509638 SNX16P57768 344 aa31.11■■■□□ 2.57
LIMCH1-211ENST00000509638 CDK17Q00537 523 aa31.11■■■□□ 2.57
LIMCH1-211ENST00000509638 AAK1Q2M2I8 961 aa31.11■■■□□ 2.57
LIMCH1-211ENST00000509638 NPAS3Q8IXF0 933 aa31.11■■■□□ 2.57
LIMCH1-211ENST00000509638 SCML4Q8N228 414 aa31.11■■■□□ 2.57
LIMCH1-211ENST00000509638 C11orf70Q9BRQ4 267 aa31.11■■■□□ 2.57
LIMCH1-211ENST00000509638 DEF6Q9H4E7 631 aa31.11■■■□□ 2.57
LIMCH1-211ENST00000509638 SLITRK6Q9H5Y7 841 aa31.11■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms