RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 GPRC5CQ9NQ84 441 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 CYP26B1Q9NR63 512 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 PSMC3IPQ9P2W1 217 aaPredicted RBP7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 CDH22Q9UJ99 828 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 NUDT5Q9UKK9 219 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 NENFQ9UMX5 172 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 PRELID1Q9Y255 219 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 SSX2IPQ9Y2D8 614 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 FADS3Q9Y5Q0 445 aa7.55□□□□□ -1.2
LIMCH1-207ENST00000508466 FRMPD4Q14CM0 1322 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 DENND3A2RUS2 1198 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 C7orf72A4D263 438 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 NOTOA8MTQ0 251 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 CAPN14A8MX76 684 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 H3BNX3 289 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 PIK3CDO00329 1044 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 MAN1A2O60476 641 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 FDX1P10109 184 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 RPA1P27694 616 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 SMARCA1P28370 1054 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 RXRBP28702 533 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 CPOXP36551 454 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 SCNN1DP51172 638 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 BMXP51813 675 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 GDF10P55107 478 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 NPEPPSP55786 919 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 RPL10AP62906 217 aaKnown RBP7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 PDAP1Q13442 181 aaKnown RBP7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 PTPN20Q4JDL3 420 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 UBE2UQ5VVX9 321 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 ATG14Q6ZNE5 492 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 PIWIL3Q7Z3Z3 882 aaKnown RBP7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 ETNPPLQ8TBG4 499 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 ELMO1Q92556 727 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 CDRT15Q96T59 188 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 TMEM79Q9BSE2 394 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 RNF38Q9H0F5 515 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 TOPORSQ9NS56 1045 aaPredicted RBP7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 TBC1D23Q9NUY8 699 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 DNAJC28Q9NX36 388 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 GMPR2Q9P2T1 348 aaKnown RBP7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 PI4KBQ9UBF8 816 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 GTF3C4Q9UKN8 822 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 DSEQ9UL01 958 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 CCPG1Q9ULG6 757 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 SOX13Q9UN79 622 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 SMG5Q9UPR3 1016 aaKnown RBP7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 BOLA1Q9Y3E2 137 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 IKBKGQ9Y6K9 419 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 ANKRD12Q6UB98 2062 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 CLUHO75153 1309 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 TRIM49D1C9J1S8 452 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 MCF2LO15068 1137 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 PRPF4O43172 522 aaKnown RBP eCLIP7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 ARSAP15289 507 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 XRCC1P18887 633 aaPredicted RBP7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 PHBP35232 272 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 PHKA2P46019 1235 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 TPTEP56180 551 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 BASP1P80723 227 aaKnown RBP7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 MS4A2Q01362 244 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 MYL7Q01449 175 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 PPP3CAQ08209 521 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 PTK7Q13308 1070 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 ITGA9Q13797 1035 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 PRKD1Q15139 912 aaPredicted RBP7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 GRIK5Q16478 980 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 Q3C1V9 767 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 PDCD4Q53EL6 469 aaKnown RBP7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 GALNT18Q6P9A2 607 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 NUDCD3Q8IVD9 361 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 ZNF786Q8N393 782 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 ATXN7L3BQ96GX2 97 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 CIB1Q99828 191 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 APEX2Q9UBZ4 518 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 STK17AQ9UEE5 414 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 KLQ9UEF7 1012 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 RABGEF1Q9UJ41 708 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 MAGED2Q9UNF1 606 aaPredicted RBP7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 FRMD4BQ9Y2L6 1034 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 RNF11Q9Y3C5 154 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 CNTNAP2Q9UHC6 1331 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 RGPD2P0DJD1 1756 aa7.54□□□□□ -1.2
LIMCH1-207ENST00000508466 FAM149AA5PLN7 773 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 ZBBXA8MT70 800 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 CXorf49A8MYA2 514 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 F8W8V4 182 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 I3L4J1 428 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 B4GAT1O43505 415 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 MAGEC1O60732 1142 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 NAT2P11245 290 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 ENO3P13929 434 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 MLLT3P42568 568 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 HNRNPDQ14103 355 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 KRT80Q6KB66 452 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 FRMD5Q7Z6J6 570 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 ZC3H7AQ8IWR0 971 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 UNC5BQ8IZJ1 945 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 BANPQ8N9N5 519 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 LZICQ8WZA0 190 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms