RNA–Protein interactions for RNA: ENST00000503742.5

UBE2D3-216, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 1 (best)

Gene UBE2D3, Length 1,977 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-216ENST00000503742 DYNLT1P63172 113 aa22.33■■□□□ 1.17
UBE2D3-216ENST00000503742 UPP1Q16831 310 aa22.33■■□□□ 1.17
UBE2D3-216ENST00000503742 IZUMO3Q5VZ72 239 aa22.33■■□□□ 1.17
UBE2D3-216ENST00000503742 HIBCHQ6NVY1 386 aaPredicted RBP22.33■■□□□ 1.17
UBE2D3-216ENST00000503742 RFX6Q8HWS3 928 aa22.33■■□□□ 1.17
UBE2D3-216ENST00000503742 CENPIQ92674 756 aaPredicted RBP22.33■■□□□ 1.17
UBE2D3-216ENST00000503742 ADAM7Q9H2U9 754 aa22.33■■□□□ 1.17
UBE2D3-216ENST00000503742 SAE1Q9UBE0 346 aaPredicted RBP22.33■■□□□ 1.17
UBE2D3-216ENST00000503742 LCP1P13796 627 aa22.32■■□□□ 1.16
UBE2D3-216ENST00000503742 CDH6P55285 790 aa22.32■■□□□ 1.16
UBE2D3-216ENST00000503742 HDAC4P56524 1084 aa22.32■■□□□ 1.16
UBE2D3-216ENST00000503742 DPYSL3Q14195 570 aa22.32■■□□□ 1.16
UBE2D3-216ENST00000503742 KDM7AQ6ZMT4 941 aa22.32■■□□□ 1.16
UBE2D3-216ENST00000503742 TBCBQ99426 244 aa22.32■■□□□ 1.16
UBE2D3-216ENST00000503742 NGRNQ9NPE2 291 aaKnown RBP22.32■■□□□ 1.16
UBE2D3-216ENST00000503742 CREBZFQ9NS37 354 aa22.32■■□□□ 1.16
UBE2D3-216ENST00000503742 NOD1Q9Y239 953 aa22.32■■□□□ 1.16
UBE2D3-216ENST00000503742 APOC4-APOC2K7ER74 178 aa22.32■■□□□ 1.16
UBE2D3-216ENST00000503742 CAND2O75155 1236 aa22.32■■□□□ 1.16
UBE2D3-216ENST00000503742 APOC2P02655 101 aa22.32■■□□□ 1.16
UBE2D3-216ENST00000503742 NPR3P17342 541 aa22.32■■□□□ 1.16
UBE2D3-216ENST00000503742 CAPN2P17655 700 aa22.32■■□□□ 1.16
UBE2D3-216ENST00000503742 LHX1P48742 406 aa22.32■■□□□ 1.16
UBE2D3-216ENST00000503742 IFFO1Q0D2I5 559 aa22.32■■□□□ 1.16
UBE2D3-216ENST00000503742 P3H1Q32P28 736 aa22.32■■□□□ 1.16
UBE2D3-216ENST00000503742 PIGZQ86VD9 579 aa22.32■■□□□ 1.16
UBE2D3-216ENST00000503742 CCDC25Q86WR0 208 aa22.32■■□□□ 1.16
UBE2D3-216ENST00000503742 ADAM2Q99965 735 aa22.32■■□□□ 1.16
UBE2D3-216ENST00000503742 TMEM121Q9BTD3 319 aa22.32■■□□□ 1.16
UBE2D3-216ENST00000503742 CALN1Q9BXU9 219 aa22.32■■□□□ 1.16
UBE2D3-216ENST00000503742 CDC42EP4Q9H3Q1 356 aaKnown RBP22.32■■□□□ 1.16
UBE2D3-216ENST00000503742 CRTAC1Q9NQ79 661 aa22.32■■□□□ 1.16
UBE2D3-216ENST00000503742 DDX43Q9NXZ2 648 aaKnown RBP22.32■■□□□ 1.16
UBE2D3-216ENST00000503742 MOXD2PA6NHM9 499 aa22.31■■□□□ 1.16
UBE2D3-216ENST00000503742 CLDN5O00501 218 aa22.31■■□□□ 1.16
UBE2D3-216ENST00000503742 DNALI1O14645 258 aaPredicted RBP22.31■■□□□ 1.16
UBE2D3-216ENST00000503742 ZSCAN5DPP0CG00 497 aa22.31■■□□□ 1.16
UBE2D3-216ENST00000503742 PLCB3Q01970 1234 aa22.31■■□□□ 1.16
UBE2D3-216ENST00000503742 MMRN1Q13201 1228 aa22.31■■□□□ 1.16
UBE2D3-216ENST00000503742 PDK2Q15119 407 aa22.31■■□□□ 1.16
UBE2D3-216ENST00000503742 KRT71Q3SY84 523 aa22.31■■□□□ 1.16
UBE2D3-216ENST00000503742 VSIG1Q86XK7 387 aa22.31■■□□□ 1.16
UBE2D3-216ENST00000503742 RAET1EQ8TD07 263 aa22.31■■□□□ 1.16
UBE2D3-216ENST00000503742 PAAF1Q9BRP4 392 aa22.31■■□□□ 1.16
UBE2D3-216ENST00000503742 DDX23Q9BUQ8 820 aaKnown RBP22.31■■□□□ 1.16
UBE2D3-216ENST00000503742 TMEM109Q9BVC6 243 aa22.31■■□□□ 1.16
UBE2D3-216ENST00000503742 ADAM33Q9BZ11 813 aa22.31■■□□□ 1.16
UBE2D3-216ENST00000503742 PCDH9Q9HC56 1237 aa22.31■■□□□ 1.16
UBE2D3-216ENST00000503742 CASTOR2A6NHX0 329 aa22.3■■□□□ 1.16
UBE2D3-216ENST00000503742 MDM4O15151 490 aa22.3■■□□□ 1.16
UBE2D3-216ENST00000503742 ETS1P14921 441 aa22.3■■□□□ 1.16
UBE2D3-216ENST00000503742 DESP17661 470 aa22.3■■□□□ 1.16
UBE2D3-216ENST00000503742 TFE3P19532 575 aaPredicted RBP22.3■■□□□ 1.16
UBE2D3-216ENST00000503742 NR1D1P20393 614 aa22.3■■□□□ 1.16
UBE2D3-216ENST00000503742 KCTD13Q8WZ19 329 aa22.3■■□□□ 1.16
UBE2D3-216ENST00000503742 FOXP3Q9BZS1 431 aa22.3■■□□□ 1.16
UBE2D3-216ENST00000503742 CENPHQ9H3R5 247 aa22.3■■□□□ 1.16
UBE2D3-216ENST00000503742 TDRD15B5MCY1 1934 aaKnown RBP22.3■■□□□ 1.16
UBE2D3-216ENST00000503742 BEST1O76090 585 aa22.3■■□□□ 1.16
UBE2D3-216ENST00000503742 PECAM1P16284 738 aaPredicted RBP22.3■■□□□ 1.16
UBE2D3-216ENST00000503742 IL4RP24394 825 aa22.3■■□□□ 1.16
UBE2D3-216ENST00000503742 ADCY1Q08828 1119 aa22.3■■□□□ 1.16
UBE2D3-216ENST00000503742 MDH1BQ5I0G3 518 aa22.3■■□□□ 1.16
UBE2D3-216ENST00000503742 SCYL2Q6P3W7 929 aa22.3■■□□□ 1.16
UBE2D3-216ENST00000503742 DSTYKQ6XUX3 929 aa22.3■■□□□ 1.16
UBE2D3-216ENST00000503742 CLEC20AQ6ZU45 233 aa22.3■■□□□ 1.16
UBE2D3-216ENST00000503742 HOOK3Q86VS8 718 aa22.3■■□□□ 1.16
UBE2D3-216ENST00000503742 RELL1Q8IUW5 271 aa22.3■■□□□ 1.16
UBE2D3-216ENST00000503742 PGBD4Q96DM1 585 aa22.3■■□□□ 1.16
UBE2D3-216ENST00000503742 GLT1D1Q96MS3 346 aa22.3■■□□□ 1.16
UBE2D3-216ENST00000503742 RNF157Q96PX1 679 aa22.3■■□□□ 1.16
UBE2D3-216ENST00000503742 TSEN34Q9BSV6 310 aaKnown RBP22.3■■□□□ 1.16
UBE2D3-216ENST00000503742 SNRNP25Q9BV90 132 aaKnown RBP22.3■■□□□ 1.16
UBE2D3-216ENST00000503742 GNRH1P01148 92 aa22.29■■□□□ 1.16
UBE2D3-216ENST00000503742 SKIP12755 728 aa22.29■■□□□ 1.16
UBE2D3-216ENST00000503742 SLC8A3P57103 927 aa22.29■■□□□ 1.16
UBE2D3-216ENST00000503742 TIGD5Q53EQ6 642 aa22.29■■□□□ 1.16
UBE2D3-216ENST00000503742 DNAJC21Q5F1R6 531 aaKnown RBP22.29■■□□□ 1.16
UBE2D3-216ENST00000503742 EFHC1Q5JVL4 640 aa22.29■■□□□ 1.16
UBE2D3-216ENST00000503742 TRAF7Q6Q0C0 670 aa22.29■■□□□ 1.16
UBE2D3-216ENST00000503742 ZNF598Q86UK7 904 aaKnown RBP22.29■■□□□ 1.16
UBE2D3-216ENST00000503742 MAP7D3Q8IWC1 876 aa22.29■■□□□ 1.16
UBE2D3-216ENST00000503742 SYT15Q9BQS2 421 aa22.29■■□□□ 1.16
UBE2D3-216ENST00000503742 PCDH18Q9HCL0 1135 aa22.29■■□□□ 1.16
UBE2D3-216ENST00000503742 UBN1Q9NPG3 1134 aa22.29■■□□□ 1.16
UBE2D3-216ENST00000503742 SGK1O00141 431 aa22.29■■□□□ 1.16
UBE2D3-216ENST00000503742 ADIGQ0VDE8 80 aa22.29■■□□□ 1.16
UBE2D3-216ENST00000503742 GRIK3Q13003 919 aa22.29■■□□□ 1.16
UBE2D3-216ENST00000503742 GPS1Q13098 491 aa22.29■■□□□ 1.16
UBE2D3-216ENST00000503742 TFDP2Q14188 446 aa22.29■■□□□ 1.16
UBE2D3-216ENST00000503742 ZC3H12AQ5D1E8 599 aaKnown RBP22.29■■□□□ 1.16
UBE2D3-216ENST00000503742 LHX8Q68G74 356 aa22.29■■□□□ 1.16
UBE2D3-216ENST00000503742 ZCCHC9Q8N567 271 aaKnown RBP22.29■■□□□ 1.16
UBE2D3-216ENST00000503742 RNF169Q8NCN4 708 aa22.29■■□□□ 1.16
UBE2D3-216ENST00000503742 PWWP2AQ96N64 755 aa22.29■■□□□ 1.16
UBE2D3-216ENST00000503742 MAK16Q9BXY0 300 aaKnown RBP22.29■■□□□ 1.16
UBE2D3-216ENST00000503742 CAPS2Q9BXY5 557 aa22.29■■□□□ 1.16
UBE2D3-216ENST00000503742 GPATCH2LQ9NWQ4 482 aa22.29■■□□□ 1.16
UBE2D3-216ENST00000503742 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP22.29■■□□□ 1.16
UBE2D3-216ENST00000503742 TPX2Q9ULW0 747 aaKnown RBP22.29■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms