RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 NUP210Q8TEM1 1887 aaPredicted RBP16.81■□□□□ 0.28
LIME1-209ENST00000494776 MYH10P35580 1976 aa16.8■□□□□ 0.28
LIME1-209ENST00000494776 TRIOO75962 3097 aa16.8■□□□□ 0.28
LIME1-209ENST00000494776 FAM92AA1XBS5 289 aa16.8■□□□□ 0.28
LIME1-209ENST00000494776 O00370 1275 aa16.8■□□□□ 0.28
LIME1-209ENST00000494776 CYP26A1O43174 497 aa16.8■□□□□ 0.28
LIME1-209ENST00000494776 OAS1P00973 400 aaKnown RBP16.8■□□□□ 0.28
LIME1-209ENST00000494776 BRD2P25440 801 aaKnown RBP16.8■□□□□ 0.28
LIME1-209ENST00000494776 KIF11P52732 1056 aa16.8■□□□□ 0.28
LIME1-209ENST00000494776 VCPP55072 806 aaKnown RBP16.8■□□□□ 0.28
LIME1-209ENST00000494776 STARD6P59095 220 aa16.8■□□□□ 0.28
LIME1-209ENST00000494776 APBA1Q02410 837 aa16.8■□□□□ 0.28
LIME1-209ENST00000494776 PDE4CQ08493 712 aa16.8■□□□□ 0.28
LIME1-209ENST00000494776 MTF1Q14872 753 aa16.8■□□□□ 0.28
LIME1-209ENST00000494776 UBXN2BQ14CS0 331 aa16.8■□□□□ 0.28
LIME1-209ENST00000494776 KRT31Q15323 416 aa16.8■□□□□ 0.28
LIME1-209ENST00000494776 CDKAL1Q5VV42 579 aa16.8■□□□□ 0.28
LIME1-209ENST00000494776 CWF19L1Q69YN2 538 aaKnown RBP16.8■□□□□ 0.28
LIME1-209ENST00000494776 TTC8Q8TAM2 541 aa16.8■□□□□ 0.28
LIME1-209ENST00000494776 TFAP2BQ92481 460 aa16.8■□□□□ 0.28
LIME1-209ENST00000494776 RNF38Q9H0F5 515 aa16.8■□□□□ 0.28
LIME1-209ENST00000494776 SMPD4Q9NXE4 827 aa16.8■□□□□ 0.28
LIME1-209ENST00000494776 ARHGAP26Q9UNA1 814 aa16.8■□□□□ 0.28
LIME1-209ENST00000494776 SIT1Q9Y3P8 196 aa16.8■□□□□ 0.28
LIME1-209ENST00000494776 DENND4CQ5VZ89 1909 aa16.79■□□□□ 0.28
LIME1-209ENST00000494776 KANSL1LA0AUZ9 987 aa16.79■□□□□ 0.28
LIME1-209ENST00000494776 M0QYV0 167 aa16.79■□□□□ 0.28
LIME1-209ENST00000494776 MAN2B1O00754 1011 aa16.79■□□□□ 0.28
LIME1-209ENST00000494776 XPO1O14980 1071 aaKnown RBP16.79■□□□□ 0.28
LIME1-209ENST00000494776 MED7O43513 233 aa16.79■□□□□ 0.28
LIME1-209ENST00000494776 SETSIPP0DME0 302 aa16.79■□□□□ 0.28
LIME1-209ENST00000494776 AOC1P19801 751 aa16.79■□□□□ 0.28
LIME1-209ENST00000494776 CD72P21854 359 aa16.79■□□□□ 0.28
LIME1-209ENST00000494776 SLC7A9P82251 487 aa16.79■□□□□ 0.28
LIME1-209ENST00000494776 CNGA2Q16280 664 aa16.79■□□□□ 0.28
LIME1-209ENST00000494776 FKBP15Q5T1M5 1219 aa16.79■□□□□ 0.28
LIME1-209ENST00000494776 SNX30Q5VWJ9 437 aa16.79■□□□□ 0.28
LIME1-209ENST00000494776 LCLAT1Q6UWP7 414 aa16.79■□□□□ 0.28
LIME1-209ENST00000494776 ZNF852Q6ZMS4 543 aa16.79■□□□□ 0.28
LIME1-209ENST00000494776 AOPEPQ8N6M6 819 aa16.79■□□□□ 0.28
LIME1-209ENST00000494776 FOXQ1Q9C009 403 aa16.79■□□□□ 0.28
LIME1-209ENST00000494776 CCSER2Q9H7U1 834 aa16.79■□□□□ 0.28
LIME1-209ENST00000494776 LRRC4Q9HBW1 653 aa16.79■□□□□ 0.28
LIME1-209ENST00000494776 DUS2Q9NX74 493 aaKnown RBP16.79■□□□□ 0.28
LIME1-209ENST00000494776 NAGPAQ9UK23 515 aa16.79■□□□□ 0.28
LIME1-209ENST00000494776 DNAJC12Q9UKB3 198 aa16.79■□□□□ 0.28
LIME1-209ENST00000494776 MRPS17Q9Y2R5 130 aaKnown RBP16.79■□□□□ 0.28
LIME1-209ENST00000494776 CPQQ9Y646 472 aa16.79■□□□□ 0.28
LIME1-209ENST00000494776 PIAS3Q9Y6X2 628 aa16.79■□□□□ 0.28
LIME1-209ENST00000494776 OBSL1O75147 1896 aa16.79■□□□□ 0.28
LIME1-209ENST00000494776 A0A1W2PQH9 124 aa16.78■□□□□ 0.28
LIME1-209ENST00000494776 LEFTY2O00292 366 aa16.78■□□□□ 0.28
LIME1-209ENST00000494776 ARNTLO00327 626 aa16.78■□□□□ 0.28
LIME1-209ENST00000494776 COCHO43405 550 aa16.78■□□□□ 0.28
LIME1-209ENST00000494776 PI15O43692 258 aa16.78■□□□□ 0.28
LIME1-209ENST00000494776 TLR5O60602 858 aa16.78■□□□□ 0.28
LIME1-209ENST00000494776 CALCAP01258 141 aa16.78■□□□□ 0.28
LIME1-209ENST00000494776 ZDHHC11BP0C7U3 371 aa16.78■□□□□ 0.28
LIME1-209ENST00000494776 IFNAR2P48551 515 aa16.78■□□□□ 0.28
LIME1-209ENST00000494776 PSEN1P49768 467 aa16.78■□□□□ 0.28
LIME1-209ENST00000494776 TUBP50607 506 aa16.78■□□□□ 0.28
LIME1-209ENST00000494776 TKTL1P51854 596 aa16.78■□□□□ 0.28
LIME1-209ENST00000494776 ZNF132P52740 706 aa16.78■□□□□ 0.28
LIME1-209ENST00000494776 TNK2Q07912 1038 aa16.78■□□□□ 0.28
LIME1-209ENST00000494776 USP4Q13107 963 aa16.78■□□□□ 0.28
LIME1-209ENST00000494776 PDGFRLQ15198 375 aa16.78■□□□□ 0.28
LIME1-209ENST00000494776 ZNF77Q15935 545 aa16.78■□□□□ 0.28
LIME1-209ENST00000494776 DDX42Q86XP3 938 aaKnown RBP eCLIP16.78■□□□□ 0.28
LIME1-209ENST00000494776 SIX6OS1Q8N1H7 587 aa16.78■□□□□ 0.28
LIME1-209ENST00000494776 ARHGAP18Q8N392 663 aa16.78■□□□□ 0.28
LIME1-209ENST00000494776 TMEM105Q8N8V8 129 aa16.78■□□□□ 0.28
LIME1-209ENST00000494776 LSM14BQ9BX40 385 aaKnown RBP16.78■□□□□ 0.28
LIME1-209ENST00000494776 C8orf33Q9H7E9 229 aaPredicted RBP16.78■□□□□ 0.28
LIME1-209ENST00000494776 SIX2Q9NPC8 291 aa16.78■□□□□ 0.28
LIME1-209ENST00000494776 GTSE1Q9NYZ3 720 aa16.78■□□□□ 0.28
LIME1-209ENST00000494776 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.78■□□□□ 0.28
LIME1-209ENST00000494776 CNTN6Q9UQ52 1028 aa16.78■□□□□ 0.28
LIME1-209ENST00000494776 MUC6Q6W4X9 2439 aa16.77■□□□□ 0.28
LIME1-209ENST00000494776 ZNF638Q14966 1978 aaKnown RBP16.77■□□□□ 0.28
LIME1-209ENST00000494776 SYCE3A1L190 88 aa16.77■□□□□ 0.28
LIME1-209ENST00000494776 FAM170BA6NMN3 283 aa16.77■□□□□ 0.28
LIME1-209ENST00000494776 SMTNL1A8MU46 457 aa16.77■□□□□ 0.28
LIME1-209ENST00000494776 TULP2O00295 520 aa16.77■□□□□ 0.28
LIME1-209ENST00000494776 THAP12O43422 761 aa16.77■□□□□ 0.28
LIME1-209ENST00000494776 OLFM2O95897 454 aa16.77■□□□□ 0.28
LIME1-209ENST00000494776 RALAP11233 206 aa16.77■□□□□ 0.28
LIME1-209ENST00000494776 GLULP15104 373 aa16.77■□□□□ 0.28
LIME1-209ENST00000494776 GNA15P30679 374 aa16.77■□□□□ 0.28
LIME1-209ENST00000494776 ATP5C1P36542 298 aaKnown RBP16.77■□□□□ 0.28
LIME1-209ENST00000494776 PLA2G4AP47712 749 aa16.77■□□□□ 0.28
LIME1-209ENST00000494776 KCNMA1Q12791 1236 aa16.77■□□□□ 0.28
LIME1-209ENST00000494776 RUNX3Q13761 415 aa16.77■□□□□ 0.28
LIME1-209ENST00000494776 RAPGEF1Q13905 1077 aa16.77■□□□□ 0.28
LIME1-209ENST00000494776 SKOR2Q2VWA4 1001 aaPredicted RBP16.77■□□□□ 0.28
LIME1-209ENST00000494776 ITPRIPL2Q3MIP1 535 aa16.77■□□□□ 0.28
LIME1-209ENST00000494776 TRIM68Q6AZZ1 485 aa16.77■□□□□ 0.28
LIME1-209ENST00000494776 CCDC186Q7Z3E2 898 aa16.77■□□□□ 0.28
LIME1-209ENST00000494776 TADA2BQ86TJ2 420 aa16.77■□□□□ 0.28
LIME1-209ENST00000494776 PJA1Q8NG27 643 aa16.77■□□□□ 0.28
LIME1-209ENST00000494776 OSCP1Q8WVF1 389 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms