RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 OSBPL1AQ9BXW6 950 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 EPN3Q9H201 632 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 IARS2Q9NSE4 1012 aaKnown RBP13.57□□□□□ -0.24
COL6A3-212ENST00000491769 DDX43Q9NXZ2 648 aaKnown RBP13.57□□□□□ -0.24
COL6A3-212ENST00000491769 GRID1Q9ULK0 1009 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 A0A1B0GW55 424 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 CHURC1-FNTBB4DL54 471 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 TK2O00142 265 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 OGTO15294 1046 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 DUX4L2P0CJ85 424 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 DUX4L3P0CJ86 424 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 DUX4L4P0CJ87 422 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 DUX4L5P0CJ88 424 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 DUX4L6P0CJ89 424 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 DUX4L7P0CJ90 424 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 CSTF3Q12996 717 aaKnown RBP13.57□□□□□ -0.24
COL6A3-212ENST00000491769 NBPF12Q5TAG4 269 aaPredicted RBP13.57□□□□□ -0.24
COL6A3-212ENST00000491769 SIRT2Q8IXJ6 389 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 CYP4X1Q8N118 509 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 C1QTNF7Q9BXJ2 289 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 GLIS2Q9BZE0 524 aaPredicted RBP13.57□□□□□ -0.24
COL6A3-212ENST00000491769 GPATCH2LQ9NWQ4 482 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 DUX4Q9UBX2 424 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 KPNA3O00505 521 aaPredicted RBP13.56□□□□□ -0.24
COL6A3-212ENST00000491769 NKRFO15226 690 aaKnown RBP eCLIP13.56□□□□□ -0.24
COL6A3-212ENST00000491769 CSDE1O75534 798 aaKnown RBP13.56□□□□□ -0.24
COL6A3-212ENST00000491769 BMP10O95393 424 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 ABCB1P08183 1280 aaPredicted RBP13.56□□□□□ -0.24
COL6A3-212ENST00000491769 CHI3L2Q15782 390 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 ZCCHC8Q6NZY4 707 aaKnown RBP13.56□□□□□ -0.24
COL6A3-212ENST00000491769 SPATA21Q7Z572 469 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 PALB2Q86YC2 1186 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 ACER1Q8TDN7 264 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 CASP10Q92851 521 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 PHF20Q9BVI0 1012 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 SNTG2Q9NY99 539 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 MUTP22033 750 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 XRCC4Q13426 336 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 C16orf59Q7L2K0 433 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 SGMS1Q86VZ5 419 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 MCOLN3Q8TDD5 553 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 SUSD6Q92537 303 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 FDXACB1Q9BRP7 624 aaPredicted RBP13.56□□□□□ -0.24
COL6A3-212ENST00000491769 GPRC5CQ9NQ84 441 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 GALNT8Q9NY28 637 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 VPS51Q9UID3 782 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 MAGI2Q86UL8 1455 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 GARTP22102 1010 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 IKBKEQ14164 716 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 OVOS1Q6IE37 1185 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 DENND1BQ6P3S1 775 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 CNDP1Q96KN2 507 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 BCL2L14Q9BZR8 327 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 PDS5AQ29RF7 1337 aaKnown RBP13.56□□□□□ -0.24
COL6A3-212ENST00000491769 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.56□□□□□ -0.24
COL6A3-212ENST00000491769 CLTBP09497 229 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 SERPINB3P29508 390 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 SNRPFP62306 86 aaKnown RBP13.56□□□□□ -0.24
COL6A3-212ENST00000491769 C7orf25Q9BPX7 421 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 CAAP1Q9H8G2 361 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 A0A1W2PQC6 194 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 A8MX80 341 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 ZNF185O15231 689 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 MSH4O15457 936 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 POLR2EP19388 210 aaKnown RBP13.56□□□□□ -0.24
COL6A3-212ENST00000491769 FNTAP49354 379 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 BCAT1P54687 386 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 SLC18A3Q16572 532 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 GJB7Q6PEY0 223 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 ZNF677Q86XU0 584 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 CYP4F12Q9HCS2 524 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 TTC37Q6PGP7 1564 aa13.56□□□□□ -0.24
COL6A3-212ENST00000491769 SNTNA6NMZ2 147 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 TEX28O15482 410 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 F9P00740 461 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 PYGMP11217 842 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 NOS3P29474 1203 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 CTNNB1P35222 781 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 TAF13Q15543 124 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 LY6KQ17RY6 165 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 C4orf22Q6V702 233 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 COL23A1Q86Y22 540 aaPredicted RBP13.55□□□□□ -0.24
COL6A3-212ENST00000491769 CDK20Q8IZL9 346 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 USP7Q93009 1102 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 CMTM5Q96DZ9 223 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 PALMDQ9NP74 551 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 MKL2Q9ULH7 1088 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 TRPC5OSA6NMA1 111 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 KRT33AO76009 404 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 MFSD10Q14728 455 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 GRIK4Q16099 956 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 TPGS1Q6ZTW0 290 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 TMEM199Q8N511 208 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 TMEM159Q96B96 161 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 MRPL48Q96GC5 212 aaKnown RBP13.55□□□□□ -0.24
COL6A3-212ENST00000491769 APOL2Q9BQE5 337 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 AASDHPPTQ9NRN7 309 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 EIF2S1P05198 315 aaKnown RBP13.55□□□□□ -0.24
COL6A3-212ENST00000491769 VDRP11473 427 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 AKR1A1P14550 325 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms