RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 CYP2S1Q96SQ9 504 aa17.17■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 CBX8Q9HC52 389 aa17.17■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 TLR8Q9NR97 1041 aaKnown RBP17.17■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 WNT16Q9UBV4 365 aa17.17■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 CHORDC1Q9UHD1 332 aaPredicted RBP17.17■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 TULP2O00295 520 aa17.16■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 CYP26A1O43174 497 aa17.16■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 MED7O43513 233 aa17.16■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 OAS1P00973 400 aaKnown RBP17.16■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 ZDHHC11BP0C7U3 371 aa17.16■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 UCHL3P15374 230 aa17.16■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 HDCP19113 662 aa17.16■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 GDI1P31150 447 aa17.16■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 PLA2G4AP47712 749 aa17.16■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 KLK7P49862 253 aa17.16■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 PFKPQ01813 784 aa17.16■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 UBXN1Q04323 297 aa17.16■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 FCHO2Q0JRZ9 810 aa17.16■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 RAPGEF1Q13905 1077 aa17.16■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 RAB41Q5JT25 222 aa17.16■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 LRRC3BQ96PB8 259 aa17.16■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 GANQ9H2C0 597 aa17.16■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 BRD9Q9H8M2 597 aa17.16■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 CCL26Q9Y258 94 aa17.16■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 SIK3Q9Y2K2 1263 aa17.16■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 USP3Q9Y6I4 520 aa17.16■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 PRR33A8MZF0 331 aa17.15■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 ZNF263O14978 683 aa17.15■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 THAP12O43422 761 aa17.15■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 OLFM2O95897 454 aa17.15■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 TUBP50607 506 aa17.15■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 TPM4P67936 248 aa17.15■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 USP4Q13107 963 aa17.15■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 DRAP1Q14919 205 aaPredicted RBP17.15■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 SYCP1Q15431 976 aa17.15■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 MEA1Q16626 185 aa17.15■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 HECTD3Q5T447 861 aa17.15■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 CCDC186Q7Z3E2 898 aa17.15■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 DNASE1L2Q92874 299 aa17.15■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 IRF7Q92985 503 aa17.15■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 SECISBP2LQ93073 1101 aaKnown RBP17.15■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 NAA15Q9BXJ9 866 aaKnown RBP17.15■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 LRRC4Q9HBW1 653 aa17.15■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 CA14Q9ULX7 337 aa17.15■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 ARHGAP26Q9UNA1 814 aa17.15■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 DAAM1Q9Y4D1 1078 aa17.15■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 HELZP42694 1942 aaKnown RBP17.14■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 FOXN3O00409 490 aaPredicted RBP17.14■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 CHADO15335 359 aa17.14■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 PNMA6AP0CW24 399 aaPredicted RBP17.14■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 TKTL1P51854 596 aa17.14■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 SLC7A9P82251 487 aa17.14■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 PTK2Q05397 1052 aa17.14■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 ZNF77Q15935 545 aa17.14■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 ARHGAP29Q52LW3 1261 aa17.14■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 BMP8AQ7Z5Y6 402 aa17.14■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 LUZP1Q86V48 1076 aa17.14■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 FAM71AQ8IYT1 594 aa17.14■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 SIX5Q8N196 739 aa17.14■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 SLC35F5Q8WV83 523 aa17.14■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 ZNF606Q8WXB4 792 aa17.14■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 KCTD13Q8WZ19 329 aa17.14■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 PBXIP1Q96AQ6 731 aa17.14■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 PCMTD1Q96MG8 357 aaPredicted RBP17.14■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 ERGIC2Q96RQ1 377 aa17.14■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 STK33Q9BYT3 514 aa17.14■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 RNF38Q9H0F5 515 aa17.14■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 CCSER2Q9H7U1 834 aa17.14■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 ACP6Q9NPH0 428 aa17.14■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 ARHGEF3Q9NR81 526 aa17.14■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 FAM207AQ9NSI2 230 aaPredicted RBP17.14■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 THG1LQ9NWX6 298 aaKnown RBP17.14■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 CPQQ9Y646 472 aa17.14■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 CUL9Q8IWT3 2517 aa17.14■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 KIF26AQ9ULI4 1882 aaPredicted RBP17.14■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 A0A1W2PQH9 124 aa17.13■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 KRBA1A5PL33 1030 aa17.13■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 COCHO43405 550 aa17.13■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 TLR5O60602 858 aa17.13■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 MBL2P11226 248 aaPredicted RBP17.13■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 TCF3P15923 654 aa17.13■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 PGFP49763 221 aa17.13■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 RGS7P49802 495 aa17.13■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 POLR2FP61218 127 aaKnown RBP17.13■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 PLCB2Q00722 1185 aa17.13■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 ADIGQ0VDE8 80 aa17.13■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 MLF2Q15773 248 aaPredicted RBP17.13■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 FILIP1LQ4L180 1135 aa17.13■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 DENND1BQ6P3S1 775 aa17.13■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 HFE2Q6ZVN8 426 aa17.13■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 SIX6OS1Q8N1H7 587 aa17.13■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 ARHGAP18Q8N392 663 aa17.13■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 NEK11Q8NG66 645 aa17.13■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 RIN3Q8TB24 985 aa17.13■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 SH3RF2Q8TEC5 729 aa17.13■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 LRFN3Q9BTN0 628 aa17.13■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 ULBP1Q9BZM6 244 aa17.13■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 MFSD1Q9H3U5 465 aa17.13■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 TRPV5Q9NQA5 729 aa17.13■□□□□ 0.33
MSH5-SAPCD1-206ENST00000491552 OSER1Q9NX31 292 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms