RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 SGSM1Q2NKQ1 1148 aa14.47□□□□□ -0.09
COL6A3-211ENST00000491233 C1orf220Q5T0J3 134 aa14.47□□□□□ -0.09
COL6A3-211ENST00000491233 SPOPLQ6IQ16 392 aa14.47□□□□□ -0.09
COL6A3-211ENST00000491233 SV2AQ7L0J3 742 aa14.47□□□□□ -0.09
COL6A3-211ENST00000491233 DDX42Q86XP3 938 aaKnown RBP eCLIP14.47□□□□□ -0.09
COL6A3-211ENST00000491233 KIAA1958Q8N8K9 716 aa14.47□□□□□ -0.09
COL6A3-211ENST00000491233 SCAMP5Q8TAC9 235 aa14.47□□□□□ -0.09
COL6A3-211ENST00000491233 USP33Q8TEY7 942 aa14.47□□□□□ -0.09
COL6A3-211ENST00000491233 OVCA2Q8WZ82 227 aa14.47□□□□□ -0.09
COL6A3-211ENST00000491233 CCDC47Q96A33 483 aaKnown RBP14.47□□□□□ -0.09
COL6A3-211ENST00000491233 LOXL4Q96JB6 756 aa14.47□□□□□ -0.09
COL6A3-211ENST00000491233 ARRDC1-AS1Q9H2J1 176 aa14.47□□□□□ -0.09
COL6A3-211ENST00000491233 FAM49BQ9NUQ9 324 aa14.47□□□□□ -0.09
COL6A3-211ENST00000491233 GMIPQ9P107 970 aa14.47□□□□□ -0.09
COL6A3-211ENST00000491233 FRMD4BQ9Y2L6 1034 aa14.47□□□□□ -0.09
COL6A3-211ENST00000491233 FAM237AA0A1B0GTK4 181 aa14.46□□□□□ -0.09
COL6A3-211ENST00000491233 ANTXRLA6NF34 631 aa14.46□□□□□ -0.09
COL6A3-211ENST00000491233 K7EQS6 105 aa14.46□□□□□ -0.09
COL6A3-211ENST00000491233 TNFRSF10BO14763 440 aa14.46□□□□□ -0.09
COL6A3-211ENST00000491233 COCHO43405 550 aa14.46□□□□□ -0.09
COL6A3-211ENST00000491233 GDF9O60383 454 aa14.46□□□□□ -0.09
COL6A3-211ENST00000491233 HLA-DRAP01903 254 aa14.46□□□□□ -0.09
COL6A3-211ENST00000491233 TRIM49P0CI25 452 aa14.46□□□□□ -0.09
COL6A3-211ENST00000491233 TRIM49CP0CI26 452 aa14.46□□□□□ -0.09
COL6A3-211ENST00000491233 NR2F2P24468 414 aa14.46□□□□□ -0.09
COL6A3-211ENST00000491233 ASPAP45381 313 aa14.46□□□□□ -0.09
COL6A3-211ENST00000491233 NDST1P52848 882 aa14.46□□□□□ -0.09
COL6A3-211ENST00000491233 SF3A2Q15428 464 aaKnown RBP14.46□□□□□ -0.09
COL6A3-211ENST00000491233 HECTD3Q5T447 861 aa14.46□□□□□ -0.09
COL6A3-211ENST00000491233 C12orf40Q86WS4 652 aa14.46□□□□□ -0.09
COL6A3-211ENST00000491233 ZMIZ2Q8NF64 920 aa14.46□□□□□ -0.09
COL6A3-211ENST00000491233 TSTD1Q8NFU3 115 aa14.46□□□□□ -0.09
COL6A3-211ENST00000491233 CCDC26Q8TAB7 109 aa14.46□□□□□ -0.09
COL6A3-211ENST00000491233 SLC2A14Q8TDB8 520 aa14.46□□□□□ -0.09
COL6A3-211ENST00000491233 TAF4BQ92750 862 aa14.46□□□□□ -0.09
COL6A3-211ENST00000491233 ZFRQ96KR1 1074 aaKnown RBP14.46□□□□□ -0.09
COL6A3-211ENST00000491233 SMOQ99835 787 aa14.46□□□□□ -0.09
COL6A3-211ENST00000491233 CCSER2Q9H7U1 834 aa14.46□□□□□ -0.09
COL6A3-211ENST00000491233 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.46□□□□□ -0.09
COL6A3-211ENST00000491233 CHORDC1Q9UHD1 332 aaPredicted RBP14.46□□□□□ -0.09
COL6A3-211ENST00000491233 TRAF3IP3Q9Y228 551 aa14.46□□□□□ -0.09
COL6A3-211ENST00000491233 SDK1Q7Z5N4 2213 aa14.46□□□□□ -0.1
COL6A3-211ENST00000491233 NUP205Q92621 2012 aa14.46□□□□□ -0.1
COL6A3-211ENST00000491233 IKBKBO14920 756 aa14.45□□□□□ -0.1
COL6A3-211ENST00000491233 FOXD2O60548 495 aaPredicted RBP14.45□□□□□ -0.1
COL6A3-211ENST00000491233 BEST1O76090 585 aa14.45□□□□□ -0.1
COL6A3-211ENST00000491233 RHOBTB3O94955 611 aa14.45□□□□□ -0.1
COL6A3-211ENST00000491233 KIF20AO95235 890 aa14.45□□□□□ -0.1
COL6A3-211ENST00000491233 ADH1CP00326 375 aa14.45□□□□□ -0.1
COL6A3-211ENST00000491233 ADH5P11766 374 aa14.45□□□□□ -0.1
COL6A3-211ENST00000491233 SLC6A11P48066 632 aa14.45□□□□□ -0.1
COL6A3-211ENST00000491233 TUBP50607 506 aa14.45□□□□□ -0.1
COL6A3-211ENST00000491233 VAMP7P51809 220 aa14.45□□□□□ -0.1
COL6A3-211ENST00000491233 DGKEP52429 567 aa14.45□□□□□ -0.1
COL6A3-211ENST00000491233 KDSRQ06136 332 aa14.45□□□□□ -0.1
COL6A3-211ENST00000491233 DNAH14Q0VDD8 3507 aa14.45□□□□□ -0.1
COL6A3-211ENST00000491233 DPYDQ12882 1025 aa14.45□□□□□ -0.1
COL6A3-211ENST00000491233 PLK5Q496M5 336 aa14.45□□□□□ -0.1
COL6A3-211ENST00000491233 AASDHQ4L235 1098 aaPredicted RBP14.45□□□□□ -0.1
COL6A3-211ENST00000491233 C2orf27AQ580R0 203 aa14.45□□□□□ -0.1
COL6A3-211ENST00000491233 UNC93AQ86WB7 457 aa14.45□□□□□ -0.1
COL6A3-211ENST00000491233 SFTPA1Q8IWL2 248 aa14.45□□□□□ -0.1
COL6A3-211ENST00000491233 ADGRG2Q8IZP9 1017 aa14.45□□□□□ -0.1
COL6A3-211ENST00000491233 CCDC33Q8N5R6 958 aa14.45□□□□□ -0.1
COL6A3-211ENST00000491233 C12orf50Q8NA57 414 aaPredicted RBP14.45□□□□□ -0.1
COL6A3-211ENST00000491233 ZC3H10Q96K80 434 aaKnown RBP14.45□□□□□ -0.1
COL6A3-211ENST00000491233 TWNKQ96RR1 684 aa14.45□□□□□ -0.1
COL6A3-211ENST00000491233 IL37Q9NZH6 218 aa14.45□□□□□ -0.1
COL6A3-211ENST00000491233 TBC1D14Q9P2M4 693 aa14.45□□□□□ -0.1
COL6A3-211ENST00000491233 MMP17Q9ULZ9 603 aa14.45□□□□□ -0.1
COL6A3-211ENST00000491233 MAPK8IP1Q9UQF2 711 aa14.45□□□□□ -0.1
COL6A3-211ENST00000491233 SH3BP1Q9Y3L3 701 aa14.45□□□□□ -0.1
COL6A3-211ENST00000491233 THADAQ6YHU6 1953 aa14.45□□□□□ -0.1
COL6A3-211ENST00000491233 E2F8A0AVK6 867 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 FAM92AA1XBS5 289 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 DCLK1O15075 740 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 MAPK13O15264 365 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 APODP05090 189 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 ZDHHC11BP0C7U3 371 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 ADORA2BP29275 332 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 MPLP40238 635 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 EIF2DP41214 584 aaKnown RBP14.44□□□□□ -0.1
COL6A3-211ENST00000491233 GCLMP48507 274 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 MAP3K7CLP57077 242 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 MESP2Q0VG99 397 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 ELF2Q15723 593 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 NFIL3Q16649 462 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 SNX30Q5VWJ9 437 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 ANO7Q6IWH7 933 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 RHBDF2Q6PJF5 856 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 KRBA2Q6ZNG9 492 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 FAM186BQ8IYM0 893 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 CRYBG2Q8N1P7 616 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 C12orf29Q8N999 325 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 TAS1R2Q8TE23 839 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 JAKMIP2Q96AA8 810 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 PNKPQ96T60 521 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 TPSD1Q9BZJ3 242 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 IMPG2Q9BZV3 1241 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 NACA2Q9H009 215 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms