RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 AMIGO2Q86SJ2 522 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 C14orf80Q86SX3 495 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 PRIMA1Q86XR5 153 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 AFAP1Q8N556 730 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 FANCBQ8NB91 859 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 IL31RAQ8NI17 732 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 OSCP1Q8WVF1 389 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 TSR2Q969E8 191 aaKnown RBP2.64□□□□□ -1.99
HMGB1-208ENST00000490788 SPSB4Q96A44 273 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 TTC17Q96AE7 1141 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 GCC1Q96CN9 775 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 TIMP4Q99727 224 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 STK31Q9BXU1 1019 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 ADARB2Q9NS39 739 aaKnown RBP2.64□□□□□ -1.99
HMGB1-208ENST00000490788 SEMA4GQ9NTN9 838 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 AFF4Q9UHB7 1163 aaKnown RBP2.64□□□□□ -1.99
HMGB1-208ENST00000490788 NDRG4Q9ULP0 352 aaKnown RBP2.64□□□□□ -1.99
HMGB1-208ENST00000490788 L1RE1Q9UN81 338 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 MRPS17Q9Y2R5 130 aaKnown RBP2.64□□□□□ -1.99
HMGB1-208ENST00000490788 ZBTB32Q9Y2Y4 487 aaPredicted RBP2.64□□□□□ -1.99
HMGB1-208ENST00000490788 COX11Q9Y6N1 276 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 WDR90Q96KV7 1748 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 DEPDC5O75140 1603 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 AHDC1Q5TGY3 1603 aaPredicted RBP2.64□□□□□ -1.99
HMGB1-208ENST00000490788 UGGT1Q9NYU2 1555 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 DIP2CQ9Y2E4 1556 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 A0A0U1RQG5 324 aaPredicted RBP2.63□□□□□ -1.99
HMGB1-208ENST00000490788 LOC102723971A0A1B0GUV8 181 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 A1L4Q6 167 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 WDR27A2RRH5 827 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 MGST3O14880 152 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 TBX3O15119 743 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 FRS3O43559 492 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 PROP1O75360 226 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 INMTO95050 263 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 ZBED1O96006 694 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 FESP07332 822 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 HNRNPCP07910 306 aaKnown RBP eCLIP2.63□□□□□ -1.99
HMGB1-208ENST00000490788 ENGP17813 658 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 WT1P19544 449 aaPredicted RBP2.63□□□□□ -1.99
HMGB1-208ENST00000490788 PEX2P28328 305 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 LIPAP38571 399 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 DGKEP52429 567 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 ARFIP2P53365 341 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 SUMO2P61956 95 aaKnown RBP2.63□□□□□ -1.99
HMGB1-208ENST00000490788 MYO1EQ12965 1108 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 CNGA2Q16280 664 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 AARS2Q5JTZ9 985 aaKnown RBP2.63□□□□□ -1.99
HMGB1-208ENST00000490788 PCID2Q5JVF3 399 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 CERCAMQ5T4B2 595 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 DCAF12L1Q5VU92 463 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 APOA5Q6Q788 366 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 PARS2Q7L3T8 475 aaKnown RBP2.63□□□□□ -1.99
HMGB1-208ENST00000490788 PTF1AQ7RTS3 328 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 GAS2L3Q86XJ1 694 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 RAB11FIP4Q86YS3 637 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 CCAR1Q8IX12 1150 aaKnown RBP2.63□□□□□ -1.99
HMGB1-208ENST00000490788 YAF2Q8IY57 180 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 C16orf71Q8IYS4 520 aaPredicted RBP2.63□□□□□ -1.99
HMGB1-208ENST00000490788 KIAA0319LQ8IZA0 1049 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 FAM109AQ8N4B1 249 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 FAM156AQ8NDB6 213 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 ABHD11Q8NFV4 315 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 TTC8Q8TAM2 541 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 BPIFB1Q8TDL5 484 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 ATG4AQ8WYN0 398 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 TBC1D5Q92609 795 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 ANKS1AQ92625 1134 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 GLG1Q92896 1179 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 RFKQ969G6 155 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 PPP2R3CQ969Q6 453 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 SARAFQ96BY9 339 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 R3HDM4Q96D70 268 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 ZNF764Q96H86 408 aaPredicted RBP2.63□□□□□ -1.99
HMGB1-208ENST00000490788 C22orf23Q9BZE7 217 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 R3HDMLQ9H3Y0 253 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 ALG13Q9NP73 1137 aaKnown RBP2.63□□□□□ -1.99
HMGB1-208ENST00000490788 SERTAD4Q9NUC0 356 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 OBP2AQ9NY56 170 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 TFCP2L1Q9NZI6 479 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 SH3BP4Q9P0V3 963 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 CPNE7Q9UBL6 633 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 DKK3Q9UBP4 350 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 ITGB1BP2Q9UKP3 347 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 USP22Q9UPT9 525 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 SH2B3Q9UQQ2 575 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 SNX13Q9Y5W8 968 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 A2MP01023 1474 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 MYOM1P52179 1685 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 ATP7AQ04656 1500 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 MAP3K1Q13233 1512 aa2.63□□□□□ -1.99
HMGB1-208ENST00000490788 DHX57Q6P158 1386 aaKnown RBP2.62□□□□□ -1.99
HMGB1-208ENST00000490788 PNPLA6Q8IY17 1366 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 DIP2AQ14689 1571 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 REREQ9P2R6 1566 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 MBD3L4A6NDZ8 208 aaPredicted RBP2.62□□□□□ -1.99
HMGB1-208ENST00000490788 MBD3L3A6NE82 208 aaPredicted RBP2.62□□□□□ -1.99
HMGB1-208ENST00000490788 PLEKHD1A6NEE1 506 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 VWC2LB2RUY7 222 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 PYCARD-AS1I3L0S3 204 aa2.62□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms