RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 MCTP1Q6DN14 999 aa17.27■□□□□ 0.36
USP48-210ENST00000489108 ZNF720Q7Z2F6 126 aa17.27■□□□□ 0.36
USP48-210ENST00000489108 MIB1Q86YT6 1006 aa17.27■□□□□ 0.36
USP48-210ENST00000489108 NAXDQ8IW45 347 aa17.27■□□□□ 0.36
USP48-210ENST00000489108 RGL4Q8IZJ4 473 aa17.27■□□□□ 0.36
USP48-210ENST00000489108 KCNV2Q8TDN2 545 aa17.27■□□□□ 0.36
USP48-210ENST00000489108 RAD54LQ92698 747 aa17.27■□□□□ 0.36
USP48-210ENST00000489108 SAAL1Q96ER3 474 aa17.27■□□□□ 0.36
USP48-210ENST00000489108 SIX4Q9UIU6 781 aa17.27■□□□□ 0.36
USP48-210ENST00000489108 ITGA11Q9UKX5 1188 aa17.27■□□□□ 0.36
USP48-210ENST00000489108 CDH9Q9ULB4 789 aa17.27■□□□□ 0.36
USP48-210ENST00000489108 CYP8B1Q9UNU6 501 aa17.27■□□□□ 0.36
USP48-210ENST00000489108 A0A1W2PQF6 199 aa17.26■□□□□ 0.35
USP48-210ENST00000489108 EIF4E1BA6NMX2 242 aaKnown RBP17.26■□□□□ 0.35
USP48-210ENST00000489108 SLC26A4O43511 780 aa17.26■□□□□ 0.35
USP48-210ENST00000489108 OAS1P00973 400 aaKnown RBP17.26■□□□□ 0.35
USP48-210ENST00000489108 PDGFRBP09619 1106 aa17.26■□□□□ 0.35
USP48-210ENST00000489108 MBL2P11226 248 aaPredicted RBP17.26■□□□□ 0.35
USP48-210ENST00000489108 HOXB2P14652 356 aa17.26■□□□□ 0.35
USP48-210ENST00000489108 MAOBP27338 520 aa17.26■□□□□ 0.35
USP48-210ENST00000489108 PPP3CCP48454 512 aa17.26■□□□□ 0.35
USP48-210ENST00000489108 GAD2Q05329 585 aa17.26■□□□□ 0.35
USP48-210ENST00000489108 KCNA1Q09470 495 aa17.26■□□□□ 0.35
USP48-210ENST00000489108 TAF10Q12962 218 aa17.26■□□□□ 0.35
USP48-210ENST00000489108 TOGARAM2Q6ZUX3 1019 aa17.26■□□□□ 0.35
USP48-210ENST00000489108 TRMT11Q7Z4G4 463 aaKnown RBP17.26■□□□□ 0.35
USP48-210ENST00000489108 BRSK2Q8IWQ3 736 aa17.26■□□□□ 0.35
USP48-210ENST00000489108 ETFBKMTQ8IXQ9 262 aa17.26■□□□□ 0.35
USP48-210ENST00000489108 SPRYD3Q8NCJ5 442 aa17.26■□□□□ 0.35
USP48-210ENST00000489108 KBTBD7Q8WVZ9 684 aa17.26■□□□□ 0.35
USP48-210ENST00000489108 ZNF419Q96HQ0 510 aaPredicted RBP17.26■□□□□ 0.35
USP48-210ENST00000489108 CEP295NLQ96MC4 621 aa17.26■□□□□ 0.35
USP48-210ENST00000489108 TBC1D14Q9P2M4 693 aa17.26■□□□□ 0.35
USP48-210ENST00000489108 DEC1Q9P2X7 70 aa17.26■□□□□ 0.35
USP48-210ENST00000489108 APOBEC2Q9Y235 224 aaKnown RBP17.26■□□□□ 0.35
USP48-210ENST00000489108 GOLGA8IPA6NC78 632 aa17.25■□□□□ 0.35
USP48-210ENST00000489108 GOLGA8JA6NMD2 632 aa17.25■□□□□ 0.35
USP48-210ENST00000489108 F8VP50 259 aa17.25■□□□□ 0.35
USP48-210ENST00000489108 TRIM24O15164 1050 aa17.25■□□□□ 0.35
USP48-210ENST00000489108 ZNF217O75362 1048 aa17.25■□□□□ 0.35
USP48-210ENST00000489108 TULP3O75386 442 aa17.25■□□□□ 0.35
USP48-210ENST00000489108 NDUFV2P19404 249 aa17.25■□□□□ 0.35
USP48-210ENST00000489108 NTSR1P30989 418 aa17.25■□□□□ 0.35
USP48-210ENST00000489108 NOP14P78316 857 aaKnown RBP17.25■□□□□ 0.35
USP48-210ENST00000489108 C10orf76Q5T2E6 689 aa17.25■□□□□ 0.35
USP48-210ENST00000489108 BTBD8Q5XKL5 378 aa17.25■□□□□ 0.35
USP48-210ENST00000489108 DPH6Q7L8W6 267 aa17.25■□□□□ 0.35
USP48-210ENST00000489108 LIMS2Q7Z4I7 341 aa17.25■□□□□ 0.35
USP48-210ENST00000489108 SFR1Q86XK3 245 aa17.25■□□□□ 0.35
USP48-210ENST00000489108 PCED1BQ96HM7 432 aa17.25■□□□□ 0.35
USP48-210ENST00000489108 ZSCAN31Q96LW9 406 aaPredicted RBP17.25■□□□□ 0.35
USP48-210ENST00000489108 AK8Q96MA6 479 aa17.25■□□□□ 0.35
USP48-210ENST00000489108 FAM124BQ9H5Z6 455 aaPredicted RBP17.25■□□□□ 0.35
USP48-210ENST00000489108 PDE11AQ9HCR9 933 aa17.25■□□□□ 0.35
USP48-210ENST00000489108 CD93Q9NPY3 652 aa17.25■□□□□ 0.35
USP48-210ENST00000489108 RBAKQ9NYW8 714 aaPredicted RBP17.25■□□□□ 0.35
USP48-210ENST00000489108 EHD2Q9NZN4 543 aa17.25■□□□□ 0.35
USP48-210ENST00000489108 FLNBO75369 2602 aaKnown RBP17.24■□□□□ 0.35
USP48-210ENST00000489108 E2F8A0AVK6 867 aa17.24■□□□□ 0.35
USP48-210ENST00000489108 TRIM66O15016 1216 aa17.24■□□□□ 0.35
USP48-210ENST00000489108 ZBTB24O43167 697 aaPredicted RBP17.24■□□□□ 0.35
USP48-210ENST00000489108 CBFA2T3O75081 653 aa17.24■□□□□ 0.35
USP48-210ENST00000489108 NDUFS2O75306 463 aa17.24■□□□□ 0.35
USP48-210ENST00000489108 PPP1R37O75864 691 aa17.24■□□□□ 0.35
USP48-210ENST00000489108 MAPRE1Q15691 268 aaKnown RBP17.24■□□□□ 0.35
USP48-210ENST00000489108 TDRD10Q5VZ19 366 aaKnown RBP17.24■□□□□ 0.35
USP48-210ENST00000489108 DDX42Q86XP3 938 aaKnown RBP eCLIP17.24■□□□□ 0.35
USP48-210ENST00000489108 TMEM25Q86YD3 366 aa17.24■□□□□ 0.35
USP48-210ENST00000489108 KRI1Q8N9T8 703 aaKnown RBP17.24■□□□□ 0.35
USP48-210ENST00000489108 IPO4Q8TEX9 1081 aaKnown RBP17.24■□□□□ 0.35
USP48-210ENST00000489108 C8orf48Q96LL4 319 aa17.24■□□□□ 0.35
USP48-210ENST00000489108 ACOX2Q99424 681 aa17.24■□□□□ 0.35
USP48-210ENST00000489108 STRA6Q9BX79 667 aa17.24■□□□□ 0.35
USP48-210ENST00000489108 MTMR12Q9C0I1 747 aa17.24■□□□□ 0.35
USP48-210ENST00000489108 SCUBE2Q9NQ36 999 aa17.24■□□□□ 0.35
USP48-210ENST00000489108 GNSP15586 552 aa17.23■□□□□ 0.35
USP48-210ENST00000489108 IFRD2Q12894 506 aaPredicted RBP17.23■□□□□ 0.35
USP48-210ENST00000489108 GRIK2Q13002 908 aa17.23■□□□□ 0.35
USP48-210ENST00000489108 ANO4Q32M45 955 aa17.23■□□□□ 0.35
USP48-210ENST00000489108 PREPLQ4J6C6 727 aaPredicted RBP17.23■□□□□ 0.35
USP48-210ENST00000489108 SYCP2LQ5T4T6 812 aa17.23■□□□□ 0.35
USP48-210ENST00000489108 EGFLAMQ63HQ2 1017 aa17.23■□□□□ 0.35
USP48-210ENST00000489108 NUDT18Q6ZVK8 323 aa17.23■□□□□ 0.35
USP48-210ENST00000489108 DYMQ7RTS9 669 aa17.23■□□□□ 0.35
USP48-210ENST00000489108 GLRX5Q86SX6 157 aa17.23■□□□□ 0.35
USP48-210ENST00000489108 MARCH9Q86YJ5 346 aa17.23■□□□□ 0.35
USP48-210ENST00000489108 TERB1Q8NA31 727 aa17.23■□□□□ 0.35
USP48-210ENST00000489108 GLIS3Q8NEA6 775 aa17.23■□□□□ 0.35
USP48-210ENST00000489108 MYCBPAPQ8TBZ2 947 aa17.23■□□□□ 0.35
USP48-210ENST00000489108 ADAM32Q8TC27 787 aa17.23■□□□□ 0.35
USP48-210ENST00000489108 SETD7Q8WTS6 366 aaKnown RBP17.23■□□□□ 0.35
USP48-210ENST00000489108 NOC3LQ8WTT2 800 aaKnown RBP17.23■□□□□ 0.35
USP48-210ENST00000489108 HVCN1Q96D96 273 aa17.23■□□□□ 0.35
USP48-210ENST00000489108 OTUB2Q96DC9 234 aa17.23■□□□□ 0.35
USP48-210ENST00000489108 HPDLQ96IR7 371 aa17.23■□□□□ 0.35
USP48-210ENST00000489108 ZFRQ96KR1 1074 aaKnown RBP17.23■□□□□ 0.35
USP48-210ENST00000489108 SLITRK1Q96PX8 696 aa17.23■□□□□ 0.35
USP48-210ENST00000489108 SLC6A17Q9H1V8 727 aa17.23■□□□□ 0.35
USP48-210ENST00000489108 CD248Q9HCU0 757 aa17.23■□□□□ 0.35
USP48-210ENST00000489108 TBC1D7Q9P0N9 293 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms