RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 FOXB2Q5VYV0 432 aa12.72□□□□□ -0.37
COL3A1-206ENST00000487010 SCUBE1Q8IWY4 988 aa12.72□□□□□ -0.37
COL3A1-206ENST00000487010 CEP120Q8N960 986 aa12.72□□□□□ -0.37
COL3A1-206ENST00000487010 RBM15BQ8NDT2 890 aaKnown RBP12.72□□□□□ -0.37
COL3A1-206ENST00000487010 FBXO27Q8NI29 283 aa12.72□□□□□ -0.37
COL3A1-206ENST00000487010 SPATA18Q8TC71 538 aa12.72□□□□□ -0.37
COL3A1-206ENST00000487010 NSUN6Q8TEA1 469 aaKnown RBP12.72□□□□□ -0.37
COL3A1-206ENST00000487010 CDHR1Q96JP9 859 aa12.72□□□□□ -0.37
COL3A1-206ENST00000487010 PPP1R12CQ9BZL4 782 aa12.72□□□□□ -0.37
COL3A1-206ENST00000487010 RPAP3Q9H6T3 665 aaPredicted RBP12.72□□□□□ -0.37
COL3A1-206ENST00000487010 QTRT2Q9H974 415 aaKnown RBP12.72□□□□□ -0.37
COL3A1-206ENST00000487010 PPARGC1AQ9UBK2 798 aaKnown RBP12.72□□□□□ -0.37
COL3A1-206ENST00000487010 PCSK1NQ9UHG2 260 aa12.72□□□□□ -0.37
COL3A1-206ENST00000487010 CYTH4Q9UIA0 394 aa12.72□□□□□ -0.37
COL3A1-206ENST00000487010 CHADO15335 359 aa12.71□□□□□ -0.37
COL3A1-206ENST00000487010 SNRPAP09012 282 aaKnown RBP12.71□□□□□ -0.37
COL3A1-206ENST00000487010 ANPEPP15144 967 aa12.71□□□□□ -0.37
COL3A1-206ENST00000487010 GCLCP48506 637 aaPredicted RBP12.71□□□□□ -0.37
COL3A1-206ENST00000487010 ROR1Q01973 937 aa12.71□□□□□ -0.37
COL3A1-206ENST00000487010 BST1Q10588 318 aa12.71□□□□□ -0.37
COL3A1-206ENST00000487010 TAF5Q15542 800 aa12.71□□□□□ -0.37
COL3A1-206ENST00000487010 WDR78Q5VTH9 848 aa12.71□□□□□ -0.37
COL3A1-206ENST00000487010 ATG16L1Q676U5 607 aa12.71□□□□□ -0.37
COL3A1-206ENST00000487010 DARS2Q6PI48 645 aaKnown RBP12.71□□□□□ -0.37
COL3A1-206ENST00000487010 EMC1Q8N766 993 aa12.71□□□□□ -0.37
COL3A1-206ENST00000487010 HSPH1Q92598 858 aa12.71□□□□□ -0.37
COL3A1-206ENST00000487010 E2F7Q96AV8 911 aa12.71□□□□□ -0.37
COL3A1-206ENST00000487010 ATG4CQ96DT6 458 aa12.71□□□□□ -0.37
COL3A1-206ENST00000487010 CFAP36Q96G28 342 aa12.71□□□□□ -0.37
COL3A1-206ENST00000487010 WNK4Q96J92 1243 aa12.71□□□□□ -0.37
COL3A1-206ENST00000487010 NR1H4Q96RI1 486 aaPredicted RBP12.71□□□□□ -0.37
COL3A1-206ENST00000487010 MECRQ9BV79 373 aa12.71□□□□□ -0.37
COL3A1-206ENST00000487010 WWP1Q9H0M0 922 aa12.71□□□□□ -0.37
COL3A1-206ENST00000487010 LHX5Q9H2C1 402 aa12.71□□□□□ -0.37
COL3A1-206ENST00000487010 TAGLN3Q9UI15 199 aa12.71□□□□□ -0.37
COL3A1-206ENST00000487010 ZNF180Q9UJW8 692 aa12.71□□□□□ -0.37
COL3A1-206ENST00000487010 TTLL3Q9Y4R7 772 aa12.71□□□□□ -0.37
COL3A1-206ENST00000487010 FER1L6Q2WGJ9 1857 aa12.71□□□□□ -0.37
COL3A1-206ENST00000487010 TTLL13PA6NNM8 815 aa12.71□□□□□ -0.38
COL3A1-206ENST00000487010 SPATA31C2B4DYI2 1134 aa12.71□□□□□ -0.38
COL3A1-206ENST00000487010 SPECC1L-ADORA2AF8WAN1 911 aa12.71□□□□□ -0.38
COL3A1-206ENST00000487010 FAM189A1O60320 539 aa12.71□□□□□ -0.38
COL3A1-206ENST00000487010 AVILO75366 819 aa12.71□□□□□ -0.38
COL3A1-206ENST00000487010 CIB2O75838 187 aa12.71□□□□□ -0.38
COL3A1-206ENST00000487010 KRT37O76014 449 aa12.71□□□□□ -0.38
COL3A1-206ENST00000487010 TM7SF2O76062 418 aa12.71□□□□□ -0.38
COL3A1-206ENST00000487010 TRUB2O95900 331 aaKnown RBP12.71□□□□□ -0.38
COL3A1-206ENST00000487010 OATP04181 439 aa12.71□□□□□ -0.38
COL3A1-206ENST00000487010 MIPP30301 263 aa12.71□□□□□ -0.38
COL3A1-206ENST00000487010 RAB27AP51159 221 aa12.71□□□□□ -0.38
COL3A1-206ENST00000487010 TMPRSS15P98073 1019 aa12.71□□□□□ -0.38
COL3A1-206ENST00000487010 CDK18Q07002 472 aa12.71□□□□□ -0.38
COL3A1-206ENST00000487010 TRMT5Q32P41 509 aaKnown RBP12.71□□□□□ -0.38
COL3A1-206ENST00000487010 SYCP2LQ5T4T6 812 aa12.71□□□□□ -0.38
COL3A1-206ENST00000487010 ANGEL2Q5VTE6 544 aaKnown RBP12.71□□□□□ -0.38
COL3A1-206ENST00000487010 CES4AQ5XG92 561 aa12.71□□□□□ -0.38
COL3A1-206ENST00000487010 SCARA5Q6ZMJ2 495 aa12.71□□□□□ -0.38
COL3A1-206ENST00000487010 RIPOR1Q6ZS17 1223 aa12.71□□□□□ -0.38
COL3A1-206ENST00000487010 MYLK4Q86YV6 388 aaPredicted RBP12.71□□□□□ -0.38
COL3A1-206ENST00000487010 ARID3BQ8IVW6 561 aaPredicted RBP12.71□□□□□ -0.38
COL3A1-206ENST00000487010 PPM1NQ8N819 430 aa12.71□□□□□ -0.38
COL3A1-206ENST00000487010 MTMR14Q8NCE2 650 aa12.71□□□□□ -0.38
COL3A1-206ENST00000487010 FAF2Q96CS3 445 aa12.71□□□□□ -0.38
COL3A1-206ENST00000487010 ACAP3Q96P50 834 aa12.71□□□□□ -0.38
COL3A1-206ENST00000487010 PANX3Q96QZ0 392 aa12.71□□□□□ -0.38
COL3A1-206ENST00000487010 CALN1Q9BXU9 219 aa12.71□□□□□ -0.38
COL3A1-206ENST00000487010 RSAD1Q9HA92 442 aa12.71□□□□□ -0.38
COL3A1-206ENST00000487010 PDP2Q9P2J9 529 aa12.71□□□□□ -0.38
COL3A1-206ENST00000487010 MAFBQ9Y5Q3 323 aaPredicted RBP12.71□□□□□ -0.38
COL3A1-206ENST00000487010 ANKRD33BA6NCL7 494 aa12.7□□□□□ -0.38
COL3A1-206ENST00000487010 CXorf49A8MYA2 514 aaPredicted RBP12.7□□□□□ -0.38
COL3A1-206ENST00000487010 CCNFP41002 786 aa12.7□□□□□ -0.38
COL3A1-206ENST00000487010 ASPAP45381 313 aa12.7□□□□□ -0.38
COL3A1-206ENST00000487010 ACTR3P61158 418 aa12.7□□□□□ -0.38
COL3A1-206ENST00000487010 YWHAZP63104 245 aaKnown RBP12.7□□□□□ -0.38
COL3A1-206ENST00000487010 MRPS5P82675 430 aaKnown RBP12.7□□□□□ -0.38
COL3A1-206ENST00000487010 TRPC3Q13507 836 aa12.7□□□□□ -0.38
COL3A1-206ENST00000487010 NOMO1Q15155 1222 aa12.7□□□□□ -0.38
COL3A1-206ENST00000487010 DUOXA2Q1HG44 320 aa12.7□□□□□ -0.38
COL3A1-206ENST00000487010 NBPF20Q3BBV1 942 aa12.7□□□□□ -0.38
COL3A1-206ENST00000487010 DNAL1Q4LDG9 190 aa12.7□□□□□ -0.38
COL3A1-206ENST00000487010 TEX44Q53QW1 395 aa12.7□□□□□ -0.38
COL3A1-206ENST00000487010 MDH1BQ5I0G3 518 aa12.7□□□□□ -0.38
COL3A1-206ENST00000487010 C6orf163Q5TEZ5 329 aa12.7□□□□□ -0.38
COL3A1-206ENST00000487010 NPNTQ6UXI9 565 aa12.7□□□□□ -0.38
COL3A1-206ENST00000487010 ZPBP2Q6X784 338 aa12.7□□□□□ -0.38
COL3A1-206ENST00000487010 ZBTB33Q86T24 672 aa12.7□□□□□ -0.38
COL3A1-206ENST00000487010 XYLT1Q86Y38 959 aa12.7□□□□□ -0.38
COL3A1-206ENST00000487010 CTAGE3PQ8IX95 158 aa12.7□□□□□ -0.38
COL3A1-206ENST00000487010 ULK2Q8IYT8 1036 aa12.7□□□□□ -0.38
COL3A1-206ENST00000487010 SLC7A3Q8WY07 619 aa12.7□□□□□ -0.38
COL3A1-206ENST00000487010 FGD4Q96M96 766 aa12.7□□□□□ -0.38
COL3A1-206ENST00000487010 CPXM1Q96SM3 734 aa12.7□□□□□ -0.38
COL3A1-206ENST00000487010 CCDC106Q9BWC9 280 aa12.7□□□□□ -0.38
COL3A1-206ENST00000487010 ZNF302Q9NR11 478 aa12.7□□□□□ -0.38
COL3A1-206ENST00000487010 SIRPGQ9P1W8 387 aa12.7□□□□□ -0.38
COL3A1-206ENST00000487010 DNAJB4Q9UDY4 337 aa12.7□□□□□ -0.38
COL3A1-206ENST00000487010 PARP14Q460N5 1801 aa12.7□□□□□ -0.38
COL3A1-206ENST00000487010 TRDMT1O14717 391 aaKnown RBP12.69□□□□□ -0.38
COL3A1-206ENST00000487010 MED7O43513 233 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms