RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 PDE4CQ08493 712 aa15.57■□□□□ 0.08
USP4-212ENST00000486549 BST2Q10589 180 aaKnown RBP15.57■□□□□ 0.08
USP4-212ENST00000486549 KCNMA1Q12791 1236 aa15.57■□□□□ 0.08
USP4-212ENST00000486549 SKOR2Q2VWA4 1001 aaPredicted RBP15.57■□□□□ 0.08
USP4-212ENST00000486549 FKBP15Q5T1M5 1219 aa15.57■□□□□ 0.08
USP4-212ENST00000486549 PIGZQ86VD9 579 aa15.57■□□□□ 0.08
USP4-212ENST00000486549 FLCNQ8NFG4 579 aa15.57■□□□□ 0.08
USP4-212ENST00000486549 BPIFB1Q8TDL5 484 aa15.57■□□□□ 0.08
USP4-212ENST00000486549 OVCA2Q8WZ82 227 aa15.57■□□□□ 0.08
USP4-212ENST00000486549 IRF7Q92985 503 aa15.57■□□□□ 0.08
USP4-212ENST00000486549 SHDQ96IW2 340 aa15.57■□□□□ 0.08
USP4-212ENST00000486549 FAM81BQ96LP2 452 aa15.57■□□□□ 0.08
USP4-212ENST00000486549 ZSWIM1Q9BR11 485 aa15.57■□□□□ 0.08
USP4-212ENST00000486549 FUCA2Q9BTY2 467 aa15.57■□□□□ 0.08
USP4-212ENST00000486549 KIF9Q9HAQ2 790 aa15.57■□□□□ 0.08
USP4-212ENST00000486549 PNPLA8Q9NP80 782 aa15.57■□□□□ 0.08
USP4-212ENST00000486549 OBP2AQ9NY56 170 aa15.57■□□□□ 0.08
USP4-212ENST00000486549 IL37Q9NZH6 218 aa15.57■□□□□ 0.08
USP4-212ENST00000486549 DNAJC12Q9UKB3 198 aa15.57■□□□□ 0.08
USP4-212ENST00000486549 KIAA1257Q9ULG3 409 aa15.57■□□□□ 0.08
USP4-212ENST00000486549 COL4A2P08572 1712 aa15.57■□□□□ 0.08
USP4-212ENST00000486549 ZDBF2Q9HCK1 2354 aa15.56■□□□□ 0.08
USP4-212ENST00000486549 FAM92AA1XBS5 289 aa15.56■□□□□ 0.08
USP4-212ENST00000486549 STK25O00506 426 aa15.56■□□□□ 0.08
USP4-212ENST00000486549 PGFP49763 221 aa15.56■□□□□ 0.08
USP4-212ENST00000486549 ZNF165P49910 485 aa15.56■□□□□ 0.08
USP4-212ENST00000486549 KIF11P52732 1056 aa15.56■□□□□ 0.08
USP4-212ENST00000486549 FCHO2Q0JRZ9 810 aa15.56■□□□□ 0.08
USP4-212ENST00000486549 RAPGEF1Q13905 1077 aa15.56■□□□□ 0.08
USP4-212ENST00000486549 ZSCAN23Q3MJ62 389 aa15.56■□□□□ 0.08
USP4-212ENST00000486549 DHX40Q8IX18 779 aaKnown RBP15.56■□□□□ 0.08
USP4-212ENST00000486549 BPIFA3Q9BQP9 254 aa15.56■□□□□ 0.08
USP4-212ENST00000486549 HSD3B7Q9H2F3 369 aa15.56■□□□□ 0.08
USP4-212ENST00000486549 CCSER2Q9H7U1 834 aa15.56■□□□□ 0.08
USP4-212ENST00000486549 ACP6Q9NPH0 428 aa15.56■□□□□ 0.08
USP4-212ENST00000486549 TLR8Q9NR97 1041 aaKnown RBP15.56■□□□□ 0.08
USP4-212ENST00000486549 HEBP1Q9NRV9 189 aa15.56■□□□□ 0.08
USP4-212ENST00000486549 SMPD4Q9NXE4 827 aa15.56■□□□□ 0.08
USP4-212ENST00000486549 LIMA1Q9UHB6 759 aaKnown RBP15.56■□□□□ 0.08
USP4-212ENST00000486549 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.56■□□□□ 0.08
USP4-212ENST00000486549 CNTN6Q9UQ52 1028 aa15.56■□□□□ 0.08
USP4-212ENST00000486549 FHOD1Q9Y613 1164 aa15.56■□□□□ 0.08
USP4-212ENST00000486549 KMT2EQ8IZD2 1858 aa15.55■□□□□ 0.08
USP4-212ENST00000486549 A0A1W2PQH9 124 aa15.55■□□□□ 0.08
USP4-212ENST00000486549 SMTNL1A8MU46 457 aa15.55■□□□□ 0.08
USP4-212ENST00000486549 BECN2A8MW95 431 aa15.55■□□□□ 0.08
USP4-212ENST00000486549 XPO1O14980 1071 aaKnown RBP15.55■□□□□ 0.08
USP4-212ENST00000486549 THAP12O43422 761 aa15.55■□□□□ 0.08
USP4-212ENST00000486549 OAS1P00973 400 aaKnown RBP15.55■□□□□ 0.08
USP4-212ENST00000486549 PNMA6AP0CW24 399 aaPredicted RBP15.55■□□□□ 0.08
USP4-212ENST00000486549 SETSIPP0DME0 302 aa15.55■□□□□ 0.08
USP4-212ENST00000486549 MBL2P11226 248 aaPredicted RBP15.55■□□□□ 0.08
USP4-212ENST00000486549 ATP1A3P13637 1013 aa15.55■□□□□ 0.08
USP4-212ENST00000486549 ZNF18P17022 549 aa15.55■□□□□ 0.08
USP4-212ENST00000486549 AOC1P19801 751 aa15.55■□□□□ 0.08
USP4-212ENST00000486549 GNA15P30679 374 aa15.55■□□□□ 0.08
USP4-212ENST00000486549 KLK7P49862 253 aa15.55■□□□□ 0.08
USP4-212ENST00000486549 TKTL1P51854 596 aa15.55■□□□□ 0.08
USP4-212ENST00000486549 ZNF268Q14587 947 aaPredicted RBP15.55■□□□□ 0.08
USP4-212ENST00000486549 STILQ15468 1287 aa15.55■□□□□ 0.08
USP4-212ENST00000486549 MLF2Q15773 248 aaPredicted RBP15.55■□□□□ 0.08
USP4-212ENST00000486549 ARHGAP29Q52LW3 1261 aa15.55■□□□□ 0.08
USP4-212ENST00000486549 SLC44A4Q53GD3 710 aa15.55■□□□□ 0.08
USP4-212ENST00000486549 HECTD3Q5T447 861 aa15.55■□□□□ 0.08
USP4-212ENST00000486549 LCLAT1Q6UWP7 414 aa15.55■□□□□ 0.08
USP4-212ENST00000486549 PRSS33Q8NF86 280 aa15.55■□□□□ 0.08
USP4-212ENST00000486549 TTC8Q8TAM2 541 aa15.55■□□□□ 0.08
USP4-212ENST00000486549 RIN3Q8TB24 985 aa15.55■□□□□ 0.08
USP4-212ENST00000486549 CSGALNACT1Q8TDX6 532 aa15.55■□□□□ 0.08
USP4-212ENST00000486549 SH3RF2Q8TEC5 729 aa15.55■□□□□ 0.08
USP4-212ENST00000486549 SHC3Q92529 594 aa15.55■□□□□ 0.08
USP4-212ENST00000486549 DNASE1L2Q92874 299 aa15.55■□□□□ 0.08
USP4-212ENST00000486549 SECISBP2LQ93073 1101 aaKnown RBP15.55■□□□□ 0.08
USP4-212ENST00000486549 NACA2Q9H009 215 aa15.55■□□□□ 0.08
USP4-212ENST00000486549 RNF38Q9H0F5 515 aa15.55■□□□□ 0.08
USP4-212ENST00000486549 TBC1D17Q9HA65 648 aa15.55■□□□□ 0.08
USP4-212ENST00000486549 LRRC4Q9HBW1 653 aa15.55■□□□□ 0.08
USP4-212ENST00000486549 THG1LQ9NWX6 298 aaKnown RBP15.55■□□□□ 0.08
USP4-212ENST00000486549 SCML2Q9UQR0 700 aa15.55■□□□□ 0.08
USP4-212ENST00000486549 CPQQ9Y646 472 aa15.55■□□□□ 0.08
USP4-212ENST00000486549 PIK3R2O00459 728 aa15.54■□□□□ 0.08
USP4-212ENST00000486549 CHADO15335 359 aa15.54■□□□□ 0.08
USP4-212ENST00000486549 COCHO43405 550 aa15.54■□□□□ 0.08
USP4-212ENST00000486549 ZDHHC11BP0C7U3 371 aa15.54■□□□□ 0.08
USP4-212ENST00000486549 PFKLP17858 780 aa15.54■□□□□ 0.08
USP4-212ENST00000486549 RGS7P49802 495 aa15.54■□□□□ 0.08
USP4-212ENST00000486549 ADIGQ0VDE8 80 aa15.54■□□□□ 0.08
USP4-212ENST00000486549 USP4Q13107 963 aa15.54■□□□□ 0.08
USP4-212ENST00000486549 MTF1Q14872 753 aa15.54■□□□□ 0.08
USP4-212ENST00000486549 ZNF77Q15935 545 aa15.54■□□□□ 0.08
USP4-212ENST00000486549 CNGA2Q16280 664 aa15.54■□□□□ 0.08
USP4-212ENST00000486549 KLHDC7AQ5VTJ3 777 aa15.54■□□□□ 0.08
USP4-212ENST00000486549 CWF19L1Q69YN2 538 aaKnown RBP15.54■□□□□ 0.08
USP4-212ENST00000486549 TRIM68Q6AZZ1 485 aa15.54■□□□□ 0.08
USP4-212ENST00000486549 DPY19L2P1Q6NXN4 242 aa15.54■□□□□ 0.08
USP4-212ENST00000486549 CC2D1AQ6P1N0 951 aaPredicted RBP15.54■□□□□ 0.08
USP4-212ENST00000486549 TPRG1Q6ZUI0 275 aa15.54■□□□□ 0.08
USP4-212ENST00000486549 ATOH1Q92858 354 aaPredicted RBP15.54■□□□□ 0.08
USP4-212ENST00000486549 PCMTD1Q96MG8 357 aaPredicted RBP15.54■□□□□ 0.08
USP4-212ENST00000486549 UBXN6Q9BZV1 441 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms