RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 SALL4Q9UJQ4 1053 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 CPSF3Q9UKF6 684 aaKnown RBP8.05□□□□□ -1.12
USP4-211ENST00000485450 TBX20Q9UMR3 447 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 A0A087WZ62 844 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 LOC105371267A0A1B0GV96 52 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 KANSL1LA0AUZ9 987 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 ARHGEF35A5YM69 484 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 HOXA2O43364 376 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 RAG1P15918 1043 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 ADSSP30520 456 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 LRPAP1P30533 357 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 SERPINB4P48594 390 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 ZNF658Q5TYW1 1059 aaPredicted RBP8.04□□□□□ -1.12
USP4-211ENST00000485450 SV2BQ7L1I2 683 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 KIAA0895Q8NCT3 520 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 WDR60Q8WVS4 1066 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 PRMT1Q99873 361 aaKnown RBP8.04□□□□□ -1.12
USP4-211ENST00000485450 FDXACB1Q9BRP7 624 aaPredicted RBP8.04□□□□□ -1.12
USP4-211ENST00000485450 B3GNT4Q9C0J1 378 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 MRPL46Q9H2W6 279 aaKnown RBP8.04□□□□□ -1.12
USP4-211ENST00000485450 TPK1Q9H3S4 243 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 VRTNQ9H8Y1 702 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 LRRC4CQ9HCJ2 640 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 INTS9Q9NV88 658 aaKnown RBP8.04□□□□□ -1.12
USP4-211ENST00000485450 RMND1Q9NWS8 449 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 PKD2L1Q9P0L9 805 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 TRIM33Q9UPN9 1127 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 NOX1Q9Y5S8 564 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 C2orf16Q68DN1 1984 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 CES2O00748 559 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 TBC1D4O60343 1298 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 TJP3O95049 919 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 UNC5CO95185 931 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 VTNP04004 478 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 ARF4P18085 180 aaPredicted RBP8.04□□□□□ -1.12
USP4-211ENST00000485450 UBA7P41226 1012 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 PPP1R2P41236 205 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 NEK2P51955 445 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 KIF11P52732 1056 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 COASYQ13057 564 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 MUM1Q2TAK8 710 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 HABP4Q5JVS0 413 aaKnown RBP8.04□□□□□ -1.12
USP4-211ENST00000485450 CEP128Q6ZU80 1094 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 RTL10Q7L3V2 364 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 MYO1HQ8N1T3 1032 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 FITM2Q8N6M3 262 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 ZNF653Q96CK0 615 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 RAD9AQ99638 391 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 CCDC68Q9H2F9 335 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 EXOC1Q9NV70 894 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 GGT7Q9UJ14 662 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 MAFFQ9ULX9 164 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 PLAGL2Q9UPG8 496 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 COLQQ9Y215 455 aaPredicted RBP8.04□□□□□ -1.12
USP4-211ENST00000485450 NVLO15381 856 aaKnown RBP8.04□□□□□ -1.12
USP4-211ENST00000485450 TGFB1I1O43294 461 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 AMHP03971 560 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 PLEKP08567 350 aaPredicted RBP8.04□□□□□ -1.12
USP4-211ENST00000485450 ETS2P15036 469 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 ATN1P54259 1190 aaPredicted RBP8.04□□□□□ -1.12
USP4-211ENST00000485450 NLRP11P59045 1033 aaKnown RBP8.04□□□□□ -1.12
USP4-211ENST00000485450 WASHC2DQ5SRD0 308 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 NOTUMQ6P988 496 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 AGMOQ6ZNB7 445 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 ESX1Q8N693 406 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 DBF4BQ8NFT6 615 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 NUDCD1Q96RS6 583 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 HNRNPABQ99729 332 aaKnown RBP8.04□□□□□ -1.12
USP4-211ENST00000485450 TMEM117Q9H0C3 514 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 CXXC1Q9P0U4 656 aaPredicted RBP8.04□□□□□ -1.12
USP4-211ENST00000485450 ARHGAP20Q9P2F6 1191 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 PRKAG3Q9UGI9 489 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 RPL26L1Q9UNX3 145 aaKnown RBP8.04□□□□□ -1.12
USP4-211ENST00000485450 YBX2Q9Y2T7 364 aaKnown RBP8.04□□□□□ -1.12
USP4-211ENST00000485450 ARL2BPQ9Y2Y0 163 aa8.04□□□□□ -1.12
USP4-211ENST00000485450 TTLL13PA6NNM8 815 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 FGFR1OPO95684 399 aaKnown RBP8.03□□□□□ -1.12
USP4-211ENST00000485450 CD52P31358 61 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 MTTPP55157 894 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 AMPD3Q01432 767 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 OCRLQ01968 901 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 SF3A3Q12874 501 aaKnown RBP eCLIP8.03□□□□□ -1.126e-7■■■■■ 26.8
USP4-211ENST00000485450 CENPPQ6IPU0 288 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 PDE12Q6L8Q7 609 aaKnown RBP8.03□□□□□ -1.12
USP4-211ENST00000485450 MPZL3Q6UWV2 235 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 AGGF1Q8N302 714 aaeCLIP8.03□□□□□ -1.12
USP4-211ENST00000485450 LRRC71Q8N4P6 559 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 TMCO5AQ8N6Q1 288 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 SCLYQ96I15 445 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 MFSD14AQ96MC6 490 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 UROC1Q96N76 676 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 TMEM237Q96Q45 408 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 TXLNGYQ9BZA5 131 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 LRMDAQ9H2I8 198 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 ATAD3AQ9NVI7 634 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 NMRK1Q9NWW6 199 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 DAAM1Q9Y4D1 1078 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 SOX1O00570 391 aaPredicted RBP8.03□□□□□ -1.12
USP4-211ENST00000485450 TOM1L1O75674 476 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 LMNAP02545 664 aaKnown RBP8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms