RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 PPFIA2O75334 1257 aa7.13□□□□□ -1.27
USP40-213ENST00000483216 HNRNPCP07910 306 aaKnown RBP eCLIP7.13□□□□□ -1.27
USP40-213ENST00000483216 MYL3P08590 195 aa7.13□□□□□ -1.27
USP40-213ENST00000483216 NPSP0C0P6 89 aa7.13□□□□□ -1.27
USP40-213ENST00000483216 ENGP17813 658 aa7.13□□□□□ -1.27
USP40-213ENST00000483216 FGFR2P21802 821 aa7.13□□□□□ -1.27
USP40-213ENST00000483216 CTGFP29279 349 aa7.13□□□□□ -1.27
USP40-213ENST00000483216 TIRAPP58753 221 aa7.13□□□□□ -1.27
USP40-213ENST00000483216 NHLH1Q02575 133 aa7.13□□□□□ -1.27
USP40-213ENST00000483216 CYP1B1Q16678 543 aa7.13□□□□□ -1.27
USP40-213ENST00000483216 MAP9Q49MG5 647 aa7.13□□□□□ -1.27
USP40-213ENST00000483216 IL31Q6EBC2 164 aa7.13□□□□□ -1.27
USP40-213ENST00000483216 CEP85Q6P2H3 762 aa7.13□□□□□ -1.27
USP40-213ENST00000483216 CATSPERGQ6ZRH7 1159 aa7.13□□□□□ -1.27
USP40-213ENST00000483216 CCDC33Q8N5R6 958 aa7.13□□□□□ -1.27
USP40-213ENST00000483216 TRIM36Q9NQ86 728 aa7.13□□□□□ -1.27
USP40-213ENST00000483216 PHTF1Q9UMS5 762 aa7.13□□□□□ -1.27
USP40-213ENST00000483216 ADAMTS5Q9UNA0 930 aa7.13□□□□□ -1.27
USP40-213ENST00000483216 LRRC3CA6NJW4 275 aa7.12□□□□□ -1.27
USP40-213ENST00000483216 M0R3H8 397 aa7.12□□□□□ -1.27
USP40-213ENST00000483216 ZNF213O14771 459 aa7.12□□□□□ -1.27
USP40-213ENST00000483216 HGFP14210 728 aa7.12□□□□□ -1.27
USP40-213ENST00000483216 GATMP50440 423 aa7.12□□□□□ -1.27
USP40-213ENST00000483216 ALDH5A1P51649 535 aaPredicted RBP7.12□□□□□ -1.27
USP40-213ENST00000483216 PGDP52209 483 aa7.12□□□□□ -1.27
USP40-213ENST00000483216 AK2P54819 239 aa7.12□□□□□ -1.27
USP40-213ENST00000483216 STK3Q13188 491 aa7.12□□□□□ -1.27
USP40-213ENST00000483216 PCID2Q5JVF3 399 aa7.12□□□□□ -1.27
USP40-213ENST00000483216 MANEALQ5VSG8 457 aa7.12□□□□□ -1.27
USP40-213ENST00000483216 KLHDC7AQ5VTJ3 777 aa7.12□□□□□ -1.27
USP40-213ENST00000483216 BEND5Q7L4P6 421 aa7.12□□□□□ -1.27
USP40-213ENST00000483216 SLC29A4Q7RTT9 530 aa7.12□□□□□ -1.27
USP40-213ENST00000483216 ABHD11Q8NFV4 315 aa7.12□□□□□ -1.27
USP40-213ENST00000483216 ZDHHC12Q96GR4 267 aa7.12□□□□□ -1.27
USP40-213ENST00000483216 ZBTB45Q96K62 511 aaPredicted RBP7.12□□□□□ -1.27
USP40-213ENST00000483216 FAM227BQ96M60 508 aa7.12□□□□□ -1.27
USP40-213ENST00000483216 THAP7Q9BT49 309 aaPredicted RBP7.12□□□□□ -1.27
USP40-213ENST00000483216 ZCWPW1Q9H0M4 648 aa7.12□□□□□ -1.27
USP40-213ENST00000483216 HEYLQ9NQ87 328 aaPredicted RBP7.12□□□□□ -1.27
USP40-213ENST00000483216 RASA4BC9J798 803 aa7.11□□□□□ -1.27
USP40-213ENST00000483216 APOL1O14791 398 aa7.11□□□□□ -1.27
USP40-213ENST00000483216 RASA4O43374 803 aa7.11□□□□□ -1.27
USP40-213ENST00000483216 JTBO76095 146 aa7.11□□□□□ -1.27
USP40-213ENST00000483216 GKP32189 559 aa7.11□□□□□ -1.27
USP40-213ENST00000483216 MTHFSP49914 203 aa7.11□□□□□ -1.27
USP40-213ENST00000483216 NEK3P51956 506 aa7.11□□□□□ -1.27
USP40-213ENST00000483216 KCNAB1Q14722 419 aa7.11□□□□□ -1.27
USP40-213ENST00000483216 LONRF1Q17RB8 773 aa7.11□□□□□ -1.27
USP40-213ENST00000483216 AMIGO2Q86SJ2 522 aa7.11□□□□□ -1.27
USP40-213ENST00000483216 FANCBQ8NB91 859 aa7.11□□□□□ -1.27
USP40-213ENST00000483216 BRI3BPQ8WY22 251 aa7.11□□□□□ -1.27
USP40-213ENST00000483216 PRR25Q96S07 402 aa7.11□□□□□ -1.27
USP40-213ENST00000483216 SELENOOQ9BVL4 669 aa7.11□□□□□ -1.27
USP40-213ENST00000483216 DNAJB11Q9UBS4 358 aa7.11□□□□□ -1.27
USP40-213ENST00000483216 A0A087WZ62 844 aa7.1□□□□□ -1.27
USP40-213ENST00000483216 KCNQ3O43525 872 aa7.1□□□□□ -1.27
USP40-213ENST00000483216 PMPCBO75439 489 aa7.1□□□□□ -1.27
USP40-213ENST00000483216 C1RP00736 705 aa7.1□□□□□ -1.27
USP40-213ENST00000483216 MYL4P12829 197 aa7.1□□□□□ -1.27
USP40-213ENST00000483216 E2F1Q01094 437 aa7.1□□□□□ -1.27
USP40-213ENST00000483216 FAM209BQ5JX69 171 aa7.1□□□□□ -1.27
USP40-213ENST00000483216 RRAGBQ5VZM2 374 aa7.1□□□□□ -1.27
USP40-213ENST00000483216 SIRT6Q8N6T7 355 aa7.1□□□□□ -1.27
USP40-213ENST00000483216 PARD3BQ8TEW8 1205 aa7.1□□□□□ -1.27
USP40-213ENST00000483216 ZNF384Q8TF68 577 aa7.1□□□□□ -1.27
USP40-213ENST00000483216 CTHRC1Q96CG8 243 aa7.1□□□□□ -1.27
USP40-213ENST00000483216 REPS1Q96D71 796 aa7.1□□□□□ -1.27
USP40-213ENST00000483216 RIPOR3Q96MK2 946 aa7.1□□□□□ -1.27
USP40-213ENST00000483216 LENG8Q96PV6 779 aaPredicted RBP7.1□□□□□ -1.27
USP40-213ENST00000483216 VPS51Q9UID3 782 aa7.1□□□□□ -1.27
USP40-213ENST00000483216 HPSEQ9Y251 543 aa7.1□□□□□ -1.27
USP40-213ENST00000483216 TARM1B6A8C7 271 aa7.09□□□□□ -1.27
USP40-213ENST00000483216 AGPSO00116 658 aa7.09□□□□□ -1.27
USP40-213ENST00000483216 AP4M1O00189 453 aa7.09□□□□□ -1.27
USP40-213ENST00000483216 PLIN1O60240 522 aa7.09□□□□□ -1.27
USP40-213ENST00000483216 FGF18O76093 207 aa7.09□□□□□ -1.27
USP40-213ENST00000483216 MYCLP12524 364 aaPredicted RBP7.09□□□□□ -1.27
USP40-213ENST00000483216 TNFSF4P23510 183 aa7.09□□□□□ -1.27
USP40-213ENST00000483216 COPAP53621 1224 aa7.09□□□□□ -1.27
USP40-213ENST00000483216 SUMO2P61956 95 aaKnown RBP7.09□□□□□ -1.27
USP40-213ENST00000483216 ARL13BQ3SXY8 428 aa7.09□□□□□ -1.27
USP40-213ENST00000483216 HIBCHQ6NVY1 386 aaPredicted RBP7.09□□□□□ -1.27
USP40-213ENST00000483216 USP17L6PQ6QN14 398 aa7.09□□□□□ -1.27
USP40-213ENST00000483216 DPY19L3Q6ZPD9 716 aa7.09□□□□□ -1.27
USP40-213ENST00000483216 CCDC146Q8IYE0 955 aa7.09□□□□□ -1.27
USP40-213ENST00000483216 OR2C3Q8N628 320 aa7.09□□□□□ -1.27
USP40-213ENST00000483216 SVIPQ8NHG7 77 aa7.09□□□□□ -1.27
USP40-213ENST00000483216 LRRC46Q96FV0 321 aa7.09□□□□□ -1.27
USP40-213ENST00000483216 ZNF764Q96H86 408 aaPredicted RBP7.09□□□□□ -1.27
USP40-213ENST00000483216 CCDC138Q96M89 665 aa7.09□□□□□ -1.27
USP40-213ENST00000483216 HIST1H2AAQ96QV6 131 aa7.09□□□□□ -1.27
USP40-213ENST00000483216 MYD88Q99836 296 aa7.09□□□□□ -1.27
USP40-213ENST00000483216 EIF2AQ9BY44 585 aaKnown RBP7.09□□□□□ -1.27
USP40-213ENST00000483216 MAGEB5Q9BZ81 275 aa7.09□□□□□ -1.27
USP40-213ENST00000483216 RIMKLBQ9ULI2 386 aa7.09□□□□□ -1.27
USP40-213ENST00000483216 KAT6AQ92794 2004 aa7.08□□□□□ -1.28
USP40-213ENST00000483216 AOX1Q06278 1338 aa7.08□□□□□ -1.28
USP40-213ENST00000483216 EXOC5O00471 708 aa7.08□□□□□ -1.28
USP40-213ENST00000483216 CENPBP07199 599 aaPredicted RBP7.08□□□□□ -1.28
USP40-213ENST00000483216 CD19P15391 556 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms