RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 METTL25Q8N6Q8 603 aa19.53■□□□□ 0.72
CCDC88B-207ENST00000479965 SLC35B2Q8TB61 432 aa19.53■□□□□ 0.72
CCDC88B-207ENST00000479965 UGT1A7Q9HAW7 530 aa19.53■□□□□ 0.72
CCDC88B-207ENST00000479965 UGT1A10Q9HAW8 530 aa19.53■□□□□ 0.72
CCDC88B-207ENST00000479965 UGT1A8Q9HAW9 530 aa19.53■□□□□ 0.72
CCDC88B-207ENST00000479965 IFT122Q9HBG6 1241 aa19.53■□□□□ 0.72
CCDC88B-207ENST00000479965 SUPT3HO75486 399 aa19.52■□□□□ 0.72
CCDC88B-207ENST00000479965 CCDC166P0CW27 439 aa19.52■□□□□ 0.72
CCDC88B-207ENST00000479965 ITGA9Q13797 1035 aa19.52■□□□□ 0.72
CCDC88B-207ENST00000479965 GK3PQ14409 553 aa19.52■□□□□ 0.72
CCDC88B-207ENST00000479965 CYP4A22Q5TCH4 519 aa19.52■□□□□ 0.72
CCDC88B-207ENST00000479965 MROH9Q5TGP6 573 aa19.52■□□□□ 0.72
CCDC88B-207ENST00000479965 TTC39BQ5VTQ0 682 aaPredicted RBP19.52■□□□□ 0.72
CCDC88B-207ENST00000479965 NDUFAF2Q8N183 169 aa19.52■□□□□ 0.72
CCDC88B-207ENST00000479965 ZNF516Q92618 1163 aa19.52■□□□□ 0.72
CCDC88B-207ENST00000479965 MRPL1Q9BYD6 325 aaKnown RBP19.52■□□□□ 0.72
CCDC88B-207ENST00000479965 KMT5AQ9NQR1 393 aa19.52■□□□□ 0.72
CCDC88B-207ENST00000479965 POMPQ9Y244 141 aa19.52■□□□□ 0.72
CCDC88B-207ENST00000479965 ZNFX1Q9P2E3 1918 aaKnown RBP19.52■□□□□ 0.72
CCDC88B-207ENST00000479965 CXorf49A8MYA2 514 aaPredicted RBP19.52■□□□□ 0.72
CCDC88B-207ENST00000479965 NDC80O14777 642 aa19.52■□□□□ 0.72
CCDC88B-207ENST00000479965 CDK4P11802 303 aa19.52■□□□□ 0.72
CCDC88B-207ENST00000479965 PCSK6P29122 969 aa19.52■□□□□ 0.72
CCDC88B-207ENST00000479965 FDFT1P37268 417 aa19.52■□□□□ 0.72
CCDC88B-207ENST00000479965 ACAP1Q15027 740 aa19.52■□□□□ 0.72
CCDC88B-207ENST00000479965 C15orf52Q6ZUT6 534 aaKnown RBP19.52■□□□□ 0.72
CCDC88B-207ENST00000479965 SLC26A11Q86WA9 606 aa19.52■□□□□ 0.72
CCDC88B-207ENST00000479965 WDR75Q8IWA0 830 aaKnown RBP19.52■□□□□ 0.72
CCDC88B-207ENST00000479965 CDH22Q9UJ99 828 aa19.52■□□□□ 0.72
CCDC88B-207ENST00000479965 APOBEC2Q9Y235 224 aaKnown RBP19.52■□□□□ 0.72
CCDC88B-207ENST00000479965 STRCP1A6NGW2 1772 aa19.52■□□□□ 0.71
CCDC88B-207ENST00000479965 TMEM191CA6NGB0 347 aa19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 G3V3G9 751 aa19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 KLF11O14901 512 aa19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 SNRPAP09012 282 aaKnown RBP19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 TMEM191BP0C7N4 346 aa19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 NPTX2P47972 431 aa19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 ATXN3P54252 364 aaPredicted RBP19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 MRPS5P82675 430 aaKnown RBP19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 MYLK3Q32MK0 819 aa19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 DCAF8Q5TAQ9 597 aa19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 FAXCQ5TGI0 409 aa19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 TRIM67Q6ZTA4 783 aa19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 SH2D5Q6ZV89 423 aa19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 ANO5Q75V66 913 aa19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 ADGRG6Q86SQ4 1221 aa19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 XAB2Q9HCS7 855 aaKnown RBP19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 DNAJC16Q9Y2G8 782 aa19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 GMEB1Q9Y692 573 aa19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 RPS6KA4O75676 772 aa19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 FAM163BP0C2L3 166 aa19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 ALDH1A3P47895 512 aa19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 QARSP47897 775 aaKnown RBP19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 STAT2P52630 851 aa19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 DMP1Q13316 513 aaPredicted RBP19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 DUS1LQ6P1R4 473 aaKnown RBP19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 POLNQ7Z5Q5 900 aa19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 HSPBAP1Q96EW2 488 aa19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 C1orf21Q9H246 121 aa19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 KCNH7Q9NS40 1196 aa19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 PCSK1NQ9UHG2 260 aa19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 NFASCO94856 1347 aa19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 CD48P09326 243 aa19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 MAPTP10636 758 aaKnown RBP19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 ITGB5P18084 799 aa19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 RFX6Q8HWS3 928 aa19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 TMEM161BQ8NDZ6 487 aa19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 TEKT1Q969V4 418 aa19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 UBAP1Q9NZ09 502 aa19.51■□□□□ 0.71
CCDC88B-207ENST00000479965 ACOT2P49753 483 aa19.5■□□□□ 0.71
CCDC88B-207ENST00000479965 EIF3EP60228 445 aaKnown RBP19.5■□□□□ 0.71
CCDC88B-207ENST00000479965 HSP90AA5PQ58FG0 334 aa19.5■□□□□ 0.71
CCDC88B-207ENST00000479965 TMC2Q8TDI7 906 aa19.5■□□□□ 0.71
CCDC88B-207ENST00000479965 DCUN1D1Q96GG9 259 aa19.5■□□□□ 0.71
CCDC88B-207ENST00000479965 BTBD7Q9P203 1132 aa19.5■□□□□ 0.71
CCDC88B-207ENST00000479965 E7ESA3 106 aa19.5■□□□□ 0.71
CCDC88B-207ENST00000479965 RBP3P10745 1247 aa19.5■□□□□ 0.71
CCDC88B-207ENST00000479965 GTF2H1P32780 548 aa19.5■□□□□ 0.71
CCDC88B-207ENST00000479965 SMAD1Q15797 465 aaKnown RBP19.5■□□□□ 0.71
CCDC88B-207ENST00000479965 TBCCQ15814 346 aa19.5■□□□□ 0.71
CCDC88B-207ENST00000479965 UGCGQ16739 394 aa19.5■□□□□ 0.71
CCDC88B-207ENST00000479965 APOBEC3HQ6NTF7 200 aaKnown RBP19.5■□□□□ 0.71
CCDC88B-207ENST00000479965 C16orf46Q6P387 395 aa19.5■□□□□ 0.71
CCDC88B-207ENST00000479965 SLC39A4Q6P5W5 647 aa19.5■□□□□ 0.71
CCDC88B-207ENST00000479965 TSHZ1Q6ZSZ6 1077 aa19.5■□□□□ 0.71
CCDC88B-207ENST00000479965 GPD1LQ8N335 351 aa19.5■□□□□ 0.71
CCDC88B-207ENST00000479965 GALNT4Q8N4A0 578 aa19.5■□□□□ 0.71
CCDC88B-207ENST00000479965 TTC13Q8NBP0 860 aa19.5■□□□□ 0.71
CCDC88B-207ENST00000479965 TRIM56Q9BRZ2 755 aaKnown RBP19.5■□□□□ 0.71
CCDC88B-207ENST00000479965 CALN1Q9BXU9 219 aa19.5■□□□□ 0.71
CCDC88B-207ENST00000479965 EHMT1Q9H9B1 1298 aa19.5■□□□□ 0.71
CCDC88B-207ENST00000479965 PCDHGA4Q9Y5G9 962 aa19.5■□□□□ 0.71
CCDC88B-207ENST00000479965 HEMK1Q9Y5R4 338 aaPredicted RBP19.5■□□□□ 0.71
CCDC88B-207ENST00000479965 SDR42E2A6NKP2 422 aa19.49■□□□□ 0.71
CCDC88B-207ENST00000479965 SRGAP2CP0DJJ0 459 aa19.49■□□□□ 0.71
CCDC88B-207ENST00000479965 SRGAP2BP0DMP2 458 aa19.49■□□□□ 0.71
CCDC88B-207ENST00000479965 TBL3Q12788 808 aaKnown RBP19.49■□□□□ 0.71
CCDC88B-207ENST00000479965 TMEM179Q6ZVK1 233 aa19.49■□□□□ 0.71
CCDC88B-207ENST00000479965 PHF13Q86YI8 300 aaPredicted RBP19.49■□□□□ 0.71
CCDC88B-207ENST00000479965 FAF2Q96CS3 445 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms