RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-223ENST00000474643 DDX42Q86XP3 938 aaKnown RBP eCLIP16.04■□□□□ 0.16
VARS-223ENST00000474643 NUP93Q8N1F7 819 aa16.04■□□□□ 0.16
VARS-223ENST00000474643 CHFRQ96EP1 664 aa16.04■□□□□ 0.16
VARS-223ENST00000474643 SMARCD1Q96GM5 515 aa16.04■□□□□ 0.16
VARS-223ENST00000474643 TTLL2Q9BWV7 592 aa16.04■□□□□ 0.16
VARS-223ENST00000474643 GZF1Q9H116 711 aaPredicted RBP16.04■□□□□ 0.16
VARS-223ENST00000474643 DMAP1Q9NPF5 467 aaPredicted RBP16.04■□□□□ 0.16
VARS-223ENST00000474643 CPQQ9Y646 472 aa16.04■□□□□ 0.16
VARS-223ENST00000474643 OTOGLQ3ZCN5 2332 aa16.03■□□□□ 0.16
VARS-223ENST00000474643 OTOL1A6NHN0 477 aaPredicted RBP16.03■□□□□ 0.16
VARS-223ENST00000474643 K7ESF4 209 aa16.03■□□□□ 0.16
VARS-223ENST00000474643 RPP40O75818 363 aaKnown RBP16.03■□□□□ 0.16
VARS-223ENST00000474643 PXNP49023 591 aaPredicted RBP16.03■□□□□ 0.16
VARS-223ENST00000474643 GALK1P51570 392 aa16.03■□□□□ 0.16
VARS-223ENST00000474643 CLDN10P78369 228 aa16.03■□□□□ 0.16
VARS-223ENST00000474643 TPD52L1Q16890 204 aaPredicted RBP16.03■□□□□ 0.16
VARS-223ENST00000474643 EML3Q32P44 896 aa16.03■□□□□ 0.16
VARS-223ENST00000474643 ZACNQ401N2 412 aa16.03■□□□□ 0.16
VARS-223ENST00000474643 SV2AQ7L0J3 742 aa16.03■□□□□ 0.16
VARS-223ENST00000474643 FAM35AQ86V20 835 aa16.03■□□□□ 0.16
VARS-223ENST00000474643 WDR5BQ86VZ2 330 aa16.03■□□□□ 0.16
VARS-223ENST00000474643 RPLP0P6Q8NHW5 317 aa16.03■□□□□ 0.16
VARS-223ENST00000474643 RIN3Q8TB24 985 aa16.03■□□□□ 0.16
VARS-223ENST00000474643 GPT2Q8TD30 523 aa16.03■□□□□ 0.16
VARS-223ENST00000474643 CEP63Q96MT8 703 aa16.03■□□□□ 0.16
VARS-223ENST00000474643 B3GNT5Q9BYG0 378 aa16.03■□□□□ 0.16
VARS-223ENST00000474643 XYLT2Q9H1B5 865 aa16.03■□□□□ 0.16
VARS-223ENST00000474643 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.03■□□□□ 0.164e-6■■■■■ 48.2
VARS-223ENST00000474643 KRT82Q9NSB4 513 aa16.03■□□□□ 0.16
VARS-223ENST00000474643 GCNT4Q9P109 453 aa16.03■□□□□ 0.16
VARS-223ENST00000474643 ARMCX3Q9UH62 379 aaPredicted RBP16.03■□□□□ 0.16
VARS-223ENST00000474643 DMXL1Q9Y485 3027 aa16.03■□□□□ 0.16
VARS-223ENST00000474643 DENND4CQ5VZ89 1909 aa16.02■□□□□ 0.16
VARS-223ENST00000474643 ZNF840PA6NDX5 716 aa16.02■□□□□ 0.16
VARS-223ENST00000474643 LRP3O75074 770 aa16.02■□□□□ 0.16
VARS-223ENST00000474643 AP1G2O75843 785 aa16.02■□□□□ 0.16
VARS-223ENST00000474643 FGFR1OPO95684 399 aaKnown RBP16.02■□□□□ 0.16
VARS-223ENST00000474643 HLA-DRAP01903 254 aa16.02■□□□□ 0.16
VARS-223ENST00000474643 ENPEPQ07075 957 aa16.02■□□□□ 0.16
VARS-223ENST00000474643 NFKBIBQ15653 356 aa16.02■□□□□ 0.16
VARS-223ENST00000474643 WDR44Q5JSH3 913 aa16.02■□□□□ 0.16
VARS-223ENST00000474643 FILIP1Q7Z7B0 1213 aa16.02■□□□□ 0.16
VARS-223ENST00000474643 ACOT1Q86TX2 421 aa16.02■□□□□ 0.16
VARS-223ENST00000474643 CREBRFQ8IUR6 639 aa16.02■□□□□ 0.16
VARS-223ENST00000474643 MLKLQ8NB16 471 aa16.02■□□□□ 0.16
VARS-223ENST00000474643 TAF4BQ92750 862 aa16.02■□□□□ 0.16
VARS-223ENST00000474643 HHIPQ96QV1 700 aa16.02■□□□□ 0.16
VARS-223ENST00000474643 VRTNQ9H8Y1 702 aa16.02■□□□□ 0.16
VARS-223ENST00000474643 METTL14Q9HCE5 456 aaKnown RBP16.02■□□□□ 0.16
VARS-223ENST00000474643 TMEM8AQ9HCN3 771 aa16.02■□□□□ 0.16
VARS-223ENST00000474643 CFAP97Q9P2B7 532 aa16.02■□□□□ 0.16
VARS-223ENST00000474643 DACH1Q9UI36 760 aa16.02■□□□□ 0.16
VARS-223ENST00000474643 SH3BP1Q9Y3L3 701 aa16.02■□□□□ 0.16
VARS-223ENST00000474643 SCAMP3O14828 347 aaKnown RBP16.01■□□□□ 0.15
VARS-223ENST00000474643 HRO43593 1189 aa16.01■□□□□ 0.15
VARS-223ENST00000474643 FOXD2O60548 495 aaPredicted RBP16.01■□□□□ 0.15
VARS-223ENST00000474643 VNN1O95497 513 aa16.01■□□□□ 0.15
VARS-223ENST00000474643 ADH1CP00326 375 aa16.01■□□□□ 0.15
VARS-223ENST00000474643 KCNA4P22459 653 aa16.01■□□□□ 0.15
VARS-223ENST00000474643 GTF2H1P32780 548 aa16.01■□□□□ 0.15
VARS-223ENST00000474643 MXI1P50539 228 aa16.01■□□□□ 0.15
VARS-223ENST00000474643 CACNA2D1P54289 1103 aa16.01■□□□□ 0.15
VARS-223ENST00000474643 SEC13P55735 322 aa16.01■□□□□ 0.15
VARS-223ENST00000474643 PPP3CAQ08209 521 aa16.01■□□□□ 0.15
VARS-223ENST00000474643 C1orf220Q5T0J3 134 aa16.01■□□□□ 0.15
VARS-223ENST00000474643 HECTD3Q5T447 861 aa16.01■□□□□ 0.15
VARS-223ENST00000474643 KRT39Q6A163 491 aa16.01■□□□□ 0.15
VARS-223ENST00000474643 TTI2Q6NXR4 508 aa16.01■□□□□ 0.15
VARS-223ENST00000474643 CACNA2D4Q7Z3S7 1137 aa16.01■□□□□ 0.15
VARS-223ENST00000474643 TTC30AQ86WT1 665 aa16.01■□□□□ 0.15
VARS-223ENST00000474643 CAMKK1Q8N5S9 505 aa16.01■□□□□ 0.15
VARS-223ENST00000474643 C12orf50Q8NA57 414 aaPredicted RBP16.01■□□□□ 0.15
VARS-223ENST00000474643 OVCA2Q8WZ82 227 aa16.01■□□□□ 0.15
VARS-223ENST00000474643 ELMO3Q96BJ8 720 aa16.01■□□□□ 0.15
VARS-223ENST00000474643 DUSP9Q99956 384 aaKnown RBP16.01■□□□□ 0.15
VARS-223ENST00000474643 C2orf42Q9NWW7 574 aa16.01■□□□□ 0.15
VARS-223ENST00000474643 GPR179Q6PRD1 2367 aa16.01■□□□□ 0.15
VARS-223ENST00000474643 APBB3O95704 486 aa16■□□□□ 0.15
VARS-223ENST00000474643 CCDC130P13994 396 aa16■□□□□ 0.15
VARS-223ENST00000474643 TCF3P15923 654 aa16■□□□□ 0.15
VARS-223ENST00000474643 HOXA6P31267 233 aa16■□□□□ 0.15
VARS-223ENST00000474643 NDST1P52848 882 aa16■□□□□ 0.15
VARS-223ENST00000474643 SLC5A3P53794 718 aa16■□□□□ 0.15
VARS-223ENST00000474643 SLC7A9P82251 487 aa16■□□□□ 0.15
VARS-223ENST00000474643 GOLGA8FQ08AF8 430 aa16■□□□□ 0.15
VARS-223ENST00000474643 GOLGA8DPQ0D2H9 430 aa16■□□□□ 0.15
VARS-223ENST00000474643 ORC1Q13415 861 aa16■□□□□ 0.15
VARS-223ENST00000474643 ELF2Q15723 593 aa16■□□□□ 0.15
VARS-223ENST00000474643 BTBD8Q5XKL5 378 aa16■□□□□ 0.15
VARS-223ENST00000474643 NAIF1Q69YI7 327 aaPredicted RBP16■□□□□ 0.15
VARS-223ENST00000474643 PKN3Q6P5Z2 889 aa16■□□□□ 0.15
VARS-223ENST00000474643 ZC3H3Q8IXZ2 948 aaKnown RBP16■□□□□ 0.15
VARS-223ENST00000474643 FAM160A2Q8N612 972 aaPredicted RBP16■□□□□ 0.15
VARS-223ENST00000474643 TSTD1Q8NFU3 115 aa16■□□□□ 0.15
VARS-223ENST00000474643 SLC2A14Q8TDB8 520 aa16■□□□□ 0.15
VARS-223ENST00000474643 GAB3Q8WWW8 586 aa16■□□□□ 0.15
VARS-223ENST00000474643 JAKMIP2Q96AA8 810 aa16■□□□□ 0.15
VARS-223ENST00000474643 KCNK16Q96T55 309 aa16■□□□□ 0.15
VARS-223ENST00000474643 SRRTQ9BXP5 876 aaKnown RBP16■□□□□ 0.15
VARS-223ENST00000474643 LINC00597Q9H2U6 94 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms