RNA–Protein interactions for RNA: ENST00000470942.1

HDAC6-218, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 668 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-218ENST00000470942 CPA6Q8N4T0 437 aa16.59■□□□□ 0.25
HDAC6-218ENST00000470942 NT5C1BQ96P26 610 aa16.59■□□□□ 0.25
HDAC6-218ENST00000470942 DUSP16Q9BY84 665 aa16.59■□□□□ 0.25
HDAC6-218ENST00000470942 NUP62CLQ9H1M0 184 aa16.59■□□□□ 0.25
HDAC6-218ENST00000470942 FAM124BQ9H5Z6 455 aaPredicted RBP16.59■□□□□ 0.25
HDAC6-218ENST00000470942 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.59■□□□□ 0.25
HDAC6-218ENST00000470942 PIEZO1Q92508 2521 aa16.58■□□□□ 0.25
HDAC6-218ENST00000470942 OTOL1A6NHN0 477 aaPredicted RBP16.58■□□□□ 0.24
HDAC6-218ENST00000470942 PMM2O15305 246 aa16.58■□□□□ 0.24
HDAC6-218ENST00000470942 P4HA2O15460 535 aa16.58■□□□□ 0.24
HDAC6-218ENST00000470942 OLFM2O95897 454 aa16.58■□□□□ 0.24
HDAC6-218ENST00000470942 AFPP02771 609 aaKnown RBP16.58■□□□□ 0.24
HDAC6-218ENST00000470942 SP9P0CG40 484 aa16.58■□□□□ 0.24
HDAC6-218ENST00000470942 CHRNB1P11230 501 aa16.58■□□□□ 0.24
HDAC6-218ENST00000470942 TCF3P15923 654 aa16.58■□□□□ 0.24
HDAC6-218ENST00000470942 NBL1P41271 181 aa16.58■□□□□ 0.24
HDAC6-218ENST00000470942 ZXDBP98169 803 aa16.58■□□□□ 0.24
HDAC6-218ENST00000470942 AMPD2Q01433 879 aa16.58■□□□□ 0.24
HDAC6-218ENST00000470942 CSTF1Q05048 431 aaKnown RBP16.58■□□□□ 0.24
HDAC6-218ENST00000470942 MTAPQ13126 283 aa16.58■□□□□ 0.24
HDAC6-218ENST00000470942 CLEC17AQ6ZS10 378 aa16.58■□□□□ 0.24
HDAC6-218ENST00000470942 GPRIN1Q7Z2K8 1008 aa16.58■□□□□ 0.24
HDAC6-218ENST00000470942 MLKLQ8NB16 471 aa16.58■□□□□ 0.24
HDAC6-218ENST00000470942 ATP2A3Q93084 1043 aa16.58■□□□□ 0.24
HDAC6-218ENST00000470942 GBP4Q96PP9 640 aa16.58■□□□□ 0.24
HDAC6-218ENST00000470942 NACA2Q9H009 215 aa16.58■□□□□ 0.24
HDAC6-218ENST00000470942 LINC00597Q9H2U6 94 aa16.58■□□□□ 0.24
HDAC6-218ENST00000470942 CHRDQ9H2X0 955 aa16.58■□□□□ 0.24
HDAC6-218ENST00000470942 CCSER2Q9H7U1 834 aa16.58■□□□□ 0.24
HDAC6-218ENST00000470942 ECT2Q9H8V3 914 aa16.58■□□□□ 0.24
HDAC6-218ENST00000470942 TLR8Q9NR97 1041 aaKnown RBP16.58■□□□□ 0.24
HDAC6-218ENST00000470942 RBM12Q9NTZ6 932 aaKnown RBP16.58■□□□□ 0.24
HDAC6-218ENST00000470942 LMBRD1Q9NUN5 540 aa16.58■□□□□ 0.24
HDAC6-218ENST00000470942 ZFHX2Q9C0A1 2572 aaPredicted RBP16.57■□□□□ 0.24
HDAC6-218ENST00000470942 FAM92AA1XBS5 289 aa16.57■□□□□ 0.24
HDAC6-218ENST00000470942 HHLA1C9JL84 531 aa16.57■□□□□ 0.24
HDAC6-218ENST00000470942 COCHO43405 550 aa16.57■□□□□ 0.24
HDAC6-218ENST00000470942 ZDHHC11BP0C7U3 371 aa16.57■□□□□ 0.24
HDAC6-218ENST00000470942 CD19P15391 556 aa16.57■□□□□ 0.24
HDAC6-218ENST00000470942 MARSP56192 900 aaKnown RBP16.57■□□□□ 0.24
HDAC6-218ENST00000470942 NR1H3Q13133 447 aa16.57■□□□□ 0.24
HDAC6-218ENST00000470942 TPD52L1Q16890 204 aaPredicted RBP16.57■□□□□ 0.24
HDAC6-218ENST00000470942 EML3Q32P44 896 aa16.57■□□□□ 0.24
HDAC6-218ENST00000470942 DGKKQ5KSL6 1271 aa16.57■□□□□ 0.24
HDAC6-218ENST00000470942 SNX30Q5VWJ9 437 aa16.57■□□□□ 0.24
HDAC6-218ENST00000470942 DDX42Q86XP3 938 aaKnown RBP eCLIP16.57■□□□□ 0.24
HDAC6-218ENST00000470942 PPM1KQ8N3J5 372 aa16.57■□□□□ 0.24
HDAC6-218ENST00000470942 EHBP1Q8NDI1 1231 aa16.57■□□□□ 0.24
HDAC6-218ENST00000470942 PNPLA8Q9NP80 782 aa16.57■□□□□ 0.24
HDAC6-218ENST00000470942 CFAP97Q9P2B7 532 aa16.57■□□□□ 0.24
HDAC6-218ENST00000470942 PCDHB4Q9Y5E5 795 aa16.57■□□□□ 0.24
HDAC6-218ENST00000470942 ATG2BQ96BY7 2078 aa16.57■□□□□ 0.24
HDAC6-218ENST00000470942 SCAMP3O14828 347 aaKnown RBP16.56■□□□□ 0.24
HDAC6-218ENST00000470942 CYP26A1O43174 497 aa16.56■□□□□ 0.24
HDAC6-218ENST00000470942 GJA4P35212 333 aa16.56■□□□□ 0.24
HDAC6-218ENST00000470942 SLC8A3P57103 927 aa16.56■□□□□ 0.24
HDAC6-218ENST00000470942 SGO2Q562F6 1265 aa16.56■□□□□ 0.24
HDAC6-218ENST00000470942 ARHGAP17Q68EM7 881 aa16.56■□□□□ 0.24
HDAC6-218ENST00000470942 TMEM270Q6UE05 265 aa16.56■□□□□ 0.24
HDAC6-218ENST00000470942 RRAGAQ7L523 313 aa16.56■□□□□ 0.24
HDAC6-218ENST00000470942 MAML2Q8IZL2 1156 aaPredicted RBP16.56■□□□□ 0.24
HDAC6-218ENST00000470942 CNOT6LQ96LI5 555 aaKnown RBP16.56■□□□□ 0.24
HDAC6-218ENST00000470942 IPO9Q96P70 1041 aaKnown RBP16.56■□□□□ 0.24
HDAC6-218ENST00000470942 FBXO4Q9UKT5 387 aa16.56■□□□□ 0.24
HDAC6-218ENST00000470942 SCML2Q9UQR0 700 aa16.56■□□□□ 0.24
HDAC6-218ENST00000470942 R4GN57 208 aa16.56■□□□□ 0.24
HDAC6-218ENST00000470942 MYOFQ9NZM1 2061 aa16.55■□□□□ 0.24
HDAC6-218ENST00000470942 SLC9A3R1O14745 358 aaPredicted RBP16.55■□□□□ 0.24
HDAC6-218ENST00000470942 TLR5O60602 858 aa16.55■□□□□ 0.24
HDAC6-218ENST00000470942 NFATC1O95644 943 aa16.55■□□□□ 0.24
HDAC6-218ENST00000470942 PGFP49763 221 aa16.55■□□□□ 0.24
HDAC6-218ENST00000470942 TUBP50607 506 aa16.55■□□□□ 0.24
HDAC6-218ENST00000470942 KIF11P52732 1056 aa16.55■□□□□ 0.24
HDAC6-218ENST00000470942 GRSF1Q12849 480 aaKnown RBP eCLIP16.55■□□□□ 0.24
HDAC6-218ENST00000470942 GOLGA7BQ2TAP0 167 aa16.55■□□□□ 0.24
HDAC6-218ENST00000470942 TSSK4Q6SA08 328 aa16.55■□□□□ 0.24
HDAC6-218ENST00000470942 UBR7Q8N806 425 aa16.55■□□□□ 0.24
HDAC6-218ENST00000470942 ANKRD52Q8NB46 1076 aa16.55■□□□□ 0.24
HDAC6-218ENST00000470942 LMO3Q8TAP4 145 aa16.55■□□□□ 0.24
HDAC6-218ENST00000470942 KAT5Q92993 513 aa16.55■□□□□ 0.24
HDAC6-218ENST00000470942 NKD2Q969F2 451 aaPredicted RBP16.55■□□□□ 0.24
HDAC6-218ENST00000470942 EXOC4Q96A65 974 aa16.55■□□□□ 0.24
HDAC6-218ENST00000470942 IER2Q9BTL4 223 aa16.55■□□□□ 0.24
HDAC6-218ENST00000470942 HESX1Q9UBX0 185 aa16.55■□□□□ 0.24
HDAC6-218ENST00000470942 SH3BP1Q9Y3L3 701 aa16.55■□□□□ 0.24
HDAC6-218ENST00000470942 FANCMQ8IYD8 2048 aa16.55■□□□□ 0.24
HDAC6-218ENST00000470942 A0A1W2PQH9 124 aa16.54■□□□□ 0.24
HDAC6-218ENST00000470942 PROB1E7EW31 1015 aa16.54■□□□□ 0.24
HDAC6-218ENST00000470942 GOLGA6L22H0YM25 854 aa16.54■□□□□ 0.24
HDAC6-218ENST00000470942 TRDMT1O14717 391 aaKnown RBP16.54■□□□□ 0.24
HDAC6-218ENST00000470942 GFRA3O60609 400 aa16.54■□□□□ 0.24
HDAC6-218ENST00000470942 IRF1P10914 325 aa16.54■□□□□ 0.24
HDAC6-218ENST00000470942 VDRP11473 427 aa16.54■□□□□ 0.24
HDAC6-218ENST00000470942 MTIF2P46199 727 aaKnown RBP16.54■□□□□ 0.24
HDAC6-218ENST00000470942 GALK1P51570 392 aa16.54■□□□□ 0.24
HDAC6-218ENST00000470942 ZNF528Q3MIS6 628 aa16.54■□□□□ 0.24
HDAC6-218ENST00000470942 ZC3H14Q6PJT7 736 aaKnown RBP16.54■□□□□ 0.24
HDAC6-218ENST00000470942 ARHGEF19Q8IW93 802 aa16.54■□□□□ 0.24
HDAC6-218ENST00000470942 CHFRQ96EP1 664 aa16.54■□□□□ 0.24
HDAC6-218ENST00000470942 MED15Q96RN5 788 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms