RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, human

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD3-208	ENST00000470531	NDRG1	Q92597	394 aa	Known RBP	11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	COPS5	Q92905	334 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	GRAMD1A	Q96CP6	724 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	APOBEC3G	Q9HC16	384 aa	Known RBP	11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	PAPOLB	Q9NRJ5	636 aa	Known RBP	11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	DNAJC16	Q9Y2G8	782 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	BHMG1	C9JSJ3	638 aa	Predicted RBP	11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	LIAS	O43766	372 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	KRT38	O76015	456 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	OSBP	P22059	807 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	MIP	P30301	263 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	SFN	P31947	248 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	BAG6	P46379	1132 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	CACNA2D1	P54289	1103 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	VCP	P55072	806 aa	Known RBP	11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	WNT7B	P56706	349 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	GALNTL6	Q49A17	601 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	XKR3	Q5GH77	459 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	C1QTNF12	Q5T7M4	302 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	VWA5B1	Q5TIE3	1220 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	HEATR6	Q6AI08	1181 aa	Known RBP	11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	RSBN1L	Q6PCB5	846 aa	Predicted RBP	11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	DNAJC14	Q6Y2X3	702 aa	Predicted RBP	11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	KCTD17	Q8N5Z5	321 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	MORC4	Q8TE76	937 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	ZNF516	Q92618	1163 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	SPATA33	Q96N06	139 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	SRPK1	Q96SB4	655 aa	Known RBP	11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	PXMP2	Q9NR77	195 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	AAAS	Q9NRG9	546 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	DDX18	Q9NVP1	670 aa	Known RBP	11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	APPL1	Q9UKG1	709 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	CORO1C	Q9ULV4	474 aa	Predicted RBP	11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	PLA2G4C	Q9UP65	541 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	TOGARAM1	Q9Y4F4	1720 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	SUPT3H	O75486	399 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	CYP1A2	P05177	515 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	FDX1	P10109	184 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	TCF7	P36402	384 aa	Predicted RBP	11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	MLH1	P40692	756 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	PLIN5	Q00G26	463 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	PTK6	Q13882	451 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	NFIL3	Q16649	462 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	SLFN12L	Q6IEE8	588 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	ANKRD23	Q86SG2	305 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	IFNE	Q86WN2	208 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	MICALL2	Q8IY33	904 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	RXFP2	Q8WXD0	754 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	LPIN3	Q9BQK8	851 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	GTSE1	Q9NYZ3	720 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	USP18	Q9UMW8	372 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	C2CD2	Q9Y426	696 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	MYO18A	Q92614	2054 aa	Known RBP	11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	ADAMTSL3	P82987	1691 aa		11.13	□□□□□ -0.63
CHD3-208	ENST00000470531	IGKV6D-41	A0A0C4DH26	115 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	XPO1	O14980	1071 aa	Known RBP	11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	GSTA2	P09210	222 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	SRGAP2B	P0DMP2	458 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	PAPOLA	P51003	745 aa	Known RBP	11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	TNFAIP1	Q13829	316 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	HIC1	Q14526	733 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	MSS51	Q4VC12	460 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	PAN2	Q504Q3	1202 aa	Known RBP	11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	ANGEL2	Q5VTE6	544 aa	Known RBP	11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	SNX31	Q8N9S9	440 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	ICA1L	Q8NDH6	482 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	CDKL2	Q92772	493 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	B3GNT5	Q9BYG0	378 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	MYH11	P35749	1972 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	TTLL13P	A6NNM8	815 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531		A8MXQ7	604 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	WNT10B	O00744	389 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	ENTPD3	O75355	529 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	PROC	P04070	461 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	TBXAS1	P24557	533 aa	Predicted RBP	11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	SLC12A2	P55011	1212 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	BMT2	Q1RMZ1	405 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	ATG16L1	Q676U5	607 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	GMCL1P1	Q8NEA9	526 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	EXD1	Q8NHP7	514 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	SREK1	Q8WXA9	508 aa	Known RBP	11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	SLITRK1	Q96PX8	696 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	MRPL4	Q9BYD3	311 aa	Known RBP	11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	DCX	O43602	365 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	MOCS2	O96007	188 aa	Predicted RBP	11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	OAS1	P00973	400 aa	Known RBP	11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	HMGCR	P04035	888 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	ALAD	P13716	330 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	PTPN4	P29074	926 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	ARL4A	P40617	200 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	NOMO3	P69849	1222 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	ART3	Q13508	389 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	ANKS1B	Q7Z6G8	1248 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	TMEM110	Q86TL2	294 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	GSTCD	Q8NEC7	633 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	TMC2	Q8TDI7	906 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	EMID1	Q96A84	441 aa	Predicted RBP	11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	CNBD2	Q96M20	576 aa		11.12	□□□□□ -0.63
CHD3-208	ENST00000470531	NIF3L1	Q9GZT8	377 aa		11.12	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms